IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2330	 70.42	0	2329828..2330040	-	70	126451448	-	BURPS1106A_2352	-	hypothetical protein
2331	 65.89	0	2330005..2330133	+	42	126454068	-	BURPS1106A_2353	-	hypothetical protein
2332	 74.13	+1	2330504..2330704	-	66	126453934	-	BURPS1106A_2354	-	hypothetical protein
2333	 68.75	0	2330677..2330916	-	79	126452241	-	BURPS1106A_2355	-	hypothetical protein
2334	 66.67	0	2330920..2331051	-	43	126455172	-	BURPS1106A_2356	-	hypothetical protein
2335	 66.67	0	2331181..2331675	-	164	126455183	-	BURPS1106A_2357	-	hypothetical protein
2336	 62.73	0	2332073..2332402	+	109	126454283	yfiA	BURPS1106A_2358	-	ribosomal subunit interface protein
2337	 64.75	0	2332558..2332818	+	86	126452910	-	BURPS1106A_2360	-	hypothetical protein
2338	 60.49	-1	2332914..2333075	-	53	126451854	-	BURPS1106A_2361	-	hypothetical protein
2339	 68.71	0	2333207..2333353	-	48	126455046	-	BURPS1106A_2362	-	hypothetical protein
2340	 64.10	0	2333434..2335851	-	805	126453756	lon	BURPS1106A_2363	-	ATP-dependent protease La
2341	 61.64	-1	2336047..2337318	-	423	126452859	clpX	BURPS1106A_2364	-	ATP-dependent protease ATP-binding subunit
2342	 63.91	0	2337479..2338132	-	217	126451473	clpP	BURPS1106A_2365	-	ATP-dependent Clp protease proteolytic subunit
2343	 64.22	0	2338267..2339616	-	449	126454578	tig	BURPS1106A_2366	-	trigger factor
2344	 74.56	+1	2339636..2339749	-	37	126453235	-	BURPS1106A_2367	-	hypothetical protein
2345	 76.46	+1	2340058..2341221	+	387	126453749	-	BURPS1106A_2368	-	glycerate kinase
2346	 67.11	0	2341324..2341773	+	149	126452807	-	BURPS1106A_2369	-	MarR family transcriptional regulator
2347	 74.07	+1	2341789..2342166	-	125	126451467	-	BURPS1106A_2370	-	hypothetical protein
2348	 74.05	+1	2342163..2343164	-	333	126455328	panE	BURPS1106A_2371	-	2-dehydropantoate 2-reductase
2349	 68.85	0	2343248..2344393	-	381	126451894	-	BURPS1106A_2372	-	LuxR family transcriptional regulator
2350	 70.32	0	2344727..2345794	+	355	126454572	-	BURPS1106A_2373	-	outer membrane porin
2351	 73.45	+1	2345818..2347011	+	397	126453682	-	BURPS1106A_2374	-	major facilitator family transporter
2352	 68.38	0	2347068..2348177	+	369	126454301	-	BURPS1106A_2375	-	histone deacetylase family protein putative
2353	 66.19	0	2348372..2348995	+	207	126453373	-	BURPS1106A_2376	-	endonuclease Nuc
2354	 63.93	0	2349122..2349304	-	60	126452137	-	BURPS1106A_2377	-	hypothetical protein
2355	 54.33	-2	2350242..2350703	+	153	126453628	-	BURPS1106A_2378	-	putative exported avidin family protein
2356	 61.11	-1	2350779..2351012	+	77	126454933	-	BURPS1106A_2379	-	hypothetical protein
2357	 58.82	-1	2351048..2351353	-	101	126452057	-	BURPS1106A_2380	-	DNA adenine methylase
2358	 71.60	0	2352205..2352630	+	141	126453179	-	BURPS1106A_2381	-	PAAR motif-containing protein
2359	 69.63	0	2352627..2353133	+	168	126452073	-	BURPS1106A_2382	-	hypothetical protein
2360	 65.82	0	2353126..2353599	+	157	126453014	-	BURPS1106A_2383	-	hypothetical protein
2361	 54.94	-2	2353643..2354077	+	144	126454232	-	BURPS1106A_2384	-	hypothetical protein
2362	 59.33	-1	2354333..2354809	+	158	126455303	-	BURPS1106A_2385	-	hypothetical protein
2363	 60.47	-1	2354999..2355127	-	42	126451880	-	BURPS1106A_2387	-	hypothetical protein
2364	 70.34	0	2355825..2356667	+	280	126451477	-	BURPS1106A_2389	-	putative phytoene synthase
2365	 70.88	0	2356708..2357964	-	418	126453350	-	BURPS1106A_2390	-	twin-arginine translocation pathway signal sequence domain-containing protein
2366	 69.42	0	2358047..2359462	-	471	126453894	-	BURPS1106A_2391	-	hypothetical protein
2367	 58.70	-1	2359553..2359690	+	45	126454835	-	BURPS1106A_2392	-	hypothetical protein
2368	 73.54	+1	2359695..2359985	-	96	126453720	-	BURPS1106A_2393	-	hypothetical protein
2369	 53.01	-2	2359985..2360167	-	60	126454850	-	BURPS1106A_2394	-	hypothetical protein
2370	 66.67	0	2360246..2360980	+	244	126455359	ompR	BURPS1106A_2395	-	osmolarity response regulator
2371	 68.24	0	2361068..2362405	+	445	126451976	risS	BURPS1106A_2396	-	sensor histidine kinase RisS
2372	 60.66	-1	2362604..2363152	+	182	126452575	-	BURPS1106A_2397	-	anti-oxidant AhpCTSA family protein
2373	 64.58	0	2363230..2363757	+	175	126454212	pcaC	BURPS1106A_2398	-	4-carboxymuconolactone decarboxylase
2374	 78.43	+2	2363977..2364129	-	50	126453200	-	BURPS1106A_2399	-	hypothetical protein
2375	 68.51	0	2364126..2364614	-	162	126452393	ispF	BURPS1106A_2400	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
2376	 71.59	0	2364655..2365365	-	236	126454537	ispD	BURPS1106A_2401	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2377	 69.16	0	2365386..2368955	+	1189	126453184	mfd	BURPS1106A_2402	-	transcription-repair coupling factor
2378	 69.80	0	2368973..2369482	+	169	126451846	-	BURPS1106A_2403	-	hypothetical protein
2379	 68.06	0	2369510..2369797	-	95	126453992	-	BURPS1106A_2404	-	hypothetical protein
2380	 68.23	0	2370099..2371316	+	405	126453134	argE	BURPS1106A_2405	-	acetylornithine deacetylase
2381	 70.16	0	2371378..2372409	+	343	126451591	-	BURPS1106A_2406	-	serine/threonine dehydratase family protein
2382	 66.27	0	2372602..2372853	-	83	126454455	-	BURPS1106A_2407	-	hypothetical protein
2383	 71.71	0	2372869..2373324	+	151	126454287	-	BURPS1106A_2408	-	hypothetical protein
2384	 70.94	0	2373344..2373460	-	38	126451571	-	BURPS1106A_2409	-	hypothetical protein
2385	 77.22	+1	2373615..2373851	-	78	126455348	-	BURPS1106A_2410	-	hypothetical protein
2386	 67.90	0	2373876..2376398	-	840	126453856	-	BURPS1106A_2411	-	1A family penicillin-binding protein
2387	 60.88	-1	2376351..2376644	+	97	126452721	-	BURPS1106A_2412	-	hypothetical protein
2388	 67.11	0	2376914..2377594	+	226	126453120	-	BURPS1106A_2413	-	PspA/IM30 family protein
2389	 72.18	0	2377709..2378923	+	404	126452003	-	BURPS1106A_2414	-	TPR repeat-containing protein
2390	 58.56	-1	2379107..2379538	+	143	126453168	mscL	BURPS1106A_2415	-	large conductance mechanosensitive channel protein
2391	 69.59	0	2379904..2380347	+	147	126452058	-	BURPS1106A_2416	-	hypothetical protein
2392	 73.87	+1	2380528..2381415	-	295	126454478	-	BURPS1106A_2417	-	hypothetical protein
2393	 58.10	-1	2381559..2381768	+	69	126453133	-	BURPS1106A_2419	-	hypothetical protein
2394	 70.67	0	2381734..2381958	-	74	126454288	-	BURPS1106A_2418	-	hypothetical protein
2395	 69.92	0	2382062..2382184	-	40	126452336	-	BURPS1106A_2420	-	hypothetical protein
2396	 64.73	0	2382508..2383437	+	309	126454997	-	BURPS1106A_2421	-	LysR family transcriptional regulator
2397	 70.19	0	2383689..2385191	-	500	126454025	-	BURPS1106A_2422	-	hydroxydechloroatrazine ethylaminohydrolase
2398	 79.10	+2	2385313..2385489	-	58	126453517	-	BURPS1106A_2423	-	hypothetical protein
2399	 57.89	-1	2385488..2385601	+	37	126452732	-	BURPS1106A_2424	-	hypothetical protein
2400	 68.36	0	2385685..2386038	+	117	126453321	uraH	BURPS1106A_2425	-	hydroxyisourate hydrolase
2401	 65.84	0	2386088..2387290	+	400	126452422	-	BURPS1106A_2426	-	hypothetical protein
2402	 62.18	-1	2387702..2387857	-	51	126454125	-	BURPS1106A_2427	-	hypothetical protein
2403	 74.42	+1	2387899..2388027	-	42	126453305	-	BURPS1106A_2428	-	hypothetical protein
2404	 65.50	0	2388155..2388667	-	170	126453721	allA	BURPS1106A_2429	-	ureidoglycolate hydrolase
2405	 67.06	0	2388664..2389677	-	337	161986644	-	BURPS1106A_2430	-	allantoicase
2406	 68.19	0	2389906..2390430	-	174	126454520	-	BURPS1106A_2431	-	hypothetical protein
2407	 67.61	0	2390427..2391380	-	317	126454389	-	BURPS1106A_2432	-	polysaccharide deacetylase
2408	 72.73	0	2391526..2392482	-	318	126453356	hyuE	BURPS1106A_2433	-	hydantoin racemase
2409	 65.10	0	2392493..2394025	-	510	126452220	-	BURPS1106A_2434	-	NCS1 nucleoside transporter family protein
2410	 68.10	0	2394138..2394833	-	231	126452872	-	BURPS1106A_2435	-	GntR family transcriptional regulator
2411	 67.52	0	2395157..2396098	-	313	126451817	ldcA	BURPS1106A_2436	-	L,D-carboxypeptidase A
2412	 74.87	+1	2396154..2396750	-	198	126454685	-	BURPS1106A_2437	-	cytidine/deoxycytidylate deaminase family protein
2413	 68.91	0	2396747..2397148	-	133	126453557	-	BURPS1106A_2438	-	hypothetical protein
2414	 71.15	0	2397473..2397628	-	51	126454888	-	BURPS1106A_2439	-	hypothetical protein
2415	 72.69	0	2397630..2397878	-	82	126451968	-	BURPS1106A_2440	-	hypothetical protein
2416	 66.07	0	2397950..2398456	-	168	126453079	-	BURPS1106A_2441	-	hypothetical protein
2417	 71.25	0	2398824..2400044	+	406	126454280	-	BURPS1106A_2442	-	major facilitator family transporter
2418	 63.02	0	2400041..2400232	+	63	126454289	-	BURPS1106A_2443	-	hypothetical protein
2419	 70.51	0	2400407..2400562	-	51	126451480	-	BURPS1106A_2444	-	hypothetical protein
2420	 62.46	0	2401716..2402951	-	411	126452592	-	BURPS1106A_2445	-	hypothetical protein
2421	 58.79	-1	2402954..2405290	-	778	126453762	-	BURPS1106A_2446	-	hypothetical protein
2422	 59.45	-1	2405764..2406165	-	133	126453792	-	BURPS1106A_2447	-	hypothetical protein
2423	 60.32	-1	2406277..2406402	+	41	126454927	-	BURPS1106A_2448	-	hypothetical protein
2424	 61.11	-1	2407165..2407290	-	41	126454693	-	BURPS1106A_2449	-	hypothetical protein
2425	 54.32	-2	2407877..2408038	-	53	126453568	-	BURPS1106A_2450	-	hypothetical protein
2426	 56.92	-1	2408883..2409323	+	146	126453737	-	BURPS1106A_2451	-	S-adenosylhomocysteine hydrolase
2427	 56.63	-2	2409301..2410227	+	308	126452581	-	BURPS1106A_2452	-	hypothetical protein
2428	 60.00	-1	2410243..2410422	+	59	126452145	-	BURPS1106A_2453	-	hypothetical protein
2429	 66.36	0	2411134..2412753	-	539	126455031	guaA	BURPS1106A_2454	-	bifunctional GMP synthase/glutamine amidotransferase protein
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.