IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
184	 62.39	0	176281..177051	+	256	126452249	xth	BURPS1106A_0186	-	exodeoxyribonuclease III
185	 65.92	0	177346..178410	-	354	126453715	-	BURPS1106A_0187	-	zinc-binding dehydrogenase family oxidoreductase
186	 70.26	0	178620..179564	+	314	126452647	-	BURPS1106A_0188	-	AraC family transcriptional regulator
187	 73.31	+1	179938..180990	-	350	126452125	-	BURPS1106A_0189	-	hypothetical protein
188	 66.97	0	180980..182293	-	437	126454886	-	BURPS1106A_0190	-	major facilitator transporter
189	 63.58	0	182305..182919	-	204	126454422	metW	BURPS1106A_0191	-	methionine biosynthesis protein MetW
190	 66.58	0	182916..184061	-	381	126453127	metX	BURPS1106A_0192	-	homoserine O-acetyltransferase
191	 68.41	0	184414..185103	-	229	126454066	slmA	BURPS1106A_0193	-	nucleoid occlusion protein
192	 70.15	0	185070..185873	-	267	126453385	-	BURPS1106A_0194	-	HAD-superfamily hydrolase
193	 64.22	0	185870..186769	-	299	126452255	argB	BURPS1106A_0195	-	acetylglutamate kinase
194	 65.85	0	186946..187068	-	40	126451498	-	BURPS1106A_0196	-	hypothetical protein
195	 78.17	+1	187094..187345	+	83	126454885	-	BURPS1106A_0197	-	hypothetical protein
196	 69.01	0	187363..188643	+	426	126453480	-	BURPS1106A_0198	-	sensor histidine kinase
197	 66.30	0	188663..189205	+	180	126452974	-	BURPS1106A_0199	-	Fis family DNA-binding response regulator
198	 64.29	0	189632..190975	-	447	126452107	hslU	BURPS1106A_0200	-	ATP-dependent protease ATP-binding subunit
199	 68.87	0	190985..191620	-	211	126451912	hslV	BURPS1106A_0201	-	ATP-dependent protease peptidase subunit
200	 73.50	+1	191626..191742	-	38	126452750	-	BURPS1106A_0202	-	hypothetical protein
201	 60.67	-1	191783..192199	-	138	126455040	dksA	BURPS1106A_0203	-	RNA polymerase-binding protein DksA
202	 66.38	0	192254..192598	-	114	126452341	-	BURPS1106A_0204	-	hypothetical protein
203	 62.12	-1	192760..193836	-	358	126453239	-	BURPS1106A_0205	-	CobW/P47K family protein
204	 70.50	0	194014..195291	-	425	126454780	-	BURPS1106A_0206	-	hypothetical protein
205	 69.67	0	195380..196312	-	310	126451479	xerC	BURPS1106A_0207	-	site-specific tyrosine recombinase XerC
206	 71.14	0	196357..197094	-	245	126452571	-	BURPS1106A_0208	-	hypothetical protein
207	 70.57	0	197118..197987	-	289	126453808	dapF	BURPS1106A_0209	-	diaminopimelate epimerase
208	 66.33	0	198028..198912	-	294	126454911	htrB	BURPS1106A_0210	-	lipid A biosynthesis lauroyl acyltransferase
209	 67.09	0	199179..200366	+	395	126451461	metK	BURPS1106A_0211	-	S-adenosylmethionine synthetase
210	 73.45	+1	200534..200887	-	117	126452679	-	BURPS1106A_0212	-	hypothetical protein
211	 66.22	0	201131..202024	+	297	126454571	-	BURPS1106A_0213	-	phytanoyl-CoA dioxygenase (PhyH) family protein
212	 69.40	0	202108..202290	-	60	126451701	-	BURPS1106A_0214	-	hypothetical protein
213	 64.73	0	202307..202513	-	68	126452493	-	BURPS1106A_0215	-	hypothetical protein
214	 65.61	0	202592..203731	+	379	126454356	-	BURPS1106A_0216	-	aldo/keto reductase family oxidoreductase
215	 68.28	0	203818..204003	-	61	126454634	-	BURPS1106A_0217	-	hypothetical protein
216	 71.14	0	204271..205209	-	312	126451814	-	BURPS1106A_0218	-	hypothetical protein
217	 73.00	+1	205256..205492	-	78	126453971	-	BURPS1106A_0219	-	hypothetical protein
218	 71.86	0	205489..206778	-	429	126455134	-	BURPS1106A_0220	-	major facilitator family transporter
219	 65.59	0	206841..207026	-	61	126453988	-	BURPS1106A_0221	-	hypothetical protein
220	 56.82	-2	207002..207133	-	43	126455185	-	BURPS1106A_0222	-	hypothetical protein
221	 65.26	0	207132..207344	+	70	126453733	-	BURPS1106A_0223	-	hypothetical protein
222	 69.09	0	207385..208416	+	343	126454046	-	BURPS1106A_0224	-	serine/threonine protein kinase
223	 74.40	+1	208693..209028	-	111	126452557	-	BURPS1106A_0225	-	hypothetical protein
224	 68.50	0	209085..210503	-	472	126452218	-	BURPS1106A_0226	-	putative coniferyl aldehyde dehydrogenase
225	 69.82	0	210538..212217	-	559	126454819	-	BURPS1106A_0227	-	acyl-CoA dehydrogenase domain-containing protein
226	 69.16	0	212451..214094	+	547	126453931	-	BURPS1106A_0228	-	GMC family oxidoreductase
227	 76.62	+1	214134..215510	-	458	126454663	fliK	BURPS1106A_0229	-	flagellar hook-length control protein FliK
228	 71.52	0	215567..216019	-	150	126453479	fliJ	BURPS1106A_0230	-	flagellar export protein FliJ
229	 72.52	0	216025..217596	-	523	126453967	fliI	BURPS1106A_0231	-	flagellar protein export ATPase FliI
230	 73.86	+1	217590..218270	-	226	126453050	fliH	BURPS1106A_0232	-	flagellar assembly protein H
231	 64.66	0	218263..219258	-	331	126452132	fliG	BURPS1106A_0233	-	flagellar motor switch protein G
232	 69.78	0	219248..221044	-	598	126453288	fliF	BURPS1106A_0234	-	flagellar MS-ring protein
233	 65.50	0	221293..221634	+	113	126453483	fliE	BURPS1106A_0235	-	flagellar hook-basal body complex protein FliE
234	 66.67	0	221756..222190	+	144	126454587	fliS	BURPS1106A_0236	-	flagellar protein FliS
235	 69.11	0	222187..222513	+	108	126454593	-	BURPS1106A_0237	-	hypothetical protein
236	 78.51	+2	222623..224125	+	500	126451708	-	BURPS1106A_0238	-	hypothetical protein
237	 72.33	0	224122..224439	+	105	126452833	-	BURPS1106A_0239	-	putative flagellar biosynthesis protein
238	 70.69	0	224659..225378	+	239	126455053	-	BURPS1106A_0240	-	hypothetical protein
239	 71.35	0	225466..226491	-	341	126452863	-	BURPS1106A_0241	-	putative xanthine dehydrogenase accessory factor
240	 67.81	0	226690..228093	-	467	126452851	-	BURPS1106A_0242	-	amino acid permease
241	 64.99	0	228335..228991	-	218	126453572	-	BURPS1106A_0243	-	LuxR family DNA-binding response regulator
242	 77.00	+1	228988..229848	-	286	126454303	-	BURPS1106A_0244	-	putative sensor histidine kinase
243	 63.55	0	230262..231032	-	256	126452194	-	BURPS1106A_0245	-	putative ferredoxin--NADP reductase
244	 72.78	0	231245..231898	-	217	126453008	-	BURPS1106A_0246	-	LysE family translocator protein
245	 72.32	0	231964..232776	-	270	126454198	-	BURPS1106A_0247	-	endonuclease/exonuclease/phosphatase family protein
246	 72.16	0	232783..233346	-	187	126454807	-	BURPS1106A_0248	-	hypothetical protein
247	 71.35	0	233370..233561	+	63	126452164	-	BURPS1106A_0249	-	hypothetical protein
248	 67.28	0	233707..234687	+	326	126453536	-	BURPS1106A_0250	-	ATP-dependent protease domain-containing protein
249	 71.03	0	234759..235880	+	373	126454680	-	BURPS1106A_0251	-	FAD-dependent oxidoreductase
250	 66.35	0	236015..236329	+	104	126452268	hip	BURPS1106A_0252	-	high-potential iron-sulfur protein
251	 67.67	0	236562..237854	+	430	126454714	-	BURPS1106A_0253	-	major facilitator family transporter
252	 64.52	0	237900..238085	+	61	126452735	-	BURPS1106A_0255	-	hypothetical protein
253	 53.59	-2	238076..238228	-	50	126451527	-	BURPS1106A_0254	-	hypothetical protein
254	 62.80	0	238285..239913	+	542	126454101	dppA	BURPS1106A_0256	-	dipeptide ABC transporter, periplasmic dipeptide-binding protein DppA
255	 66.77	0	240025..241035	+	336	126455063	dppB	BURPS1106A_0257	-	dipeptide ABC transporter, permease protein DppB
256	 70.38	0	241110..242051	+	313	126452395	dppC	BURPS1106A_0258	-	dipeptide ABC transporter, permease protein DppC
257	 67.07	0	242053..243045	+	330	126453266	dppD	BURPS1106A_0259	-	dipeptide ABC transporter, ATP-binding protein DppD
258	 68.93	0	243042..244058	+	338	126455308	dppF	BURPS1106A_0260	-	dipeptide transporter ATP-binding subunit
259	 73.09	+1	244063..245199	+	378	126454311	-	BURPS1106A_0261	-	GumN family protein
260	 68.23	0	245677..246633	-	318	126453132	-	BURPS1106A_0262	-	hypothetical protein
261	 71.45	0	246630..247382	-	250	126454307	-	BURPS1106A_0263	-	hypothetical protein
262	 70.33	0	247992..248756	-	254	126455197	-	BURPS1106A_0264	-	hypothetical protein
263	 73.33	+1	248815..249894	-	359	126451983	-	BURPS1106A_0265	-	allophanate hydrolase, subunit 2
264	 69.39	0	249891..250661	-	256	126453827	-	BURPS1106A_0266	-	putative allophanate hydrolase, subunit 1
265	 62.77	0	250697..251209	+	170	126454754	-	BURPS1106A_0267	-	hypothetical protein
266	 73.87	+1	251481..252077	-	198	126452206	-	BURPS1106A_0268	-	5-formyltetrahydrofolate cyclo-ligase family protein
267	 68.51	0	252099..254054	+	651	126453322	-	BURPS1106A_0269	-	Slt family transglycosylase
268	 73.54	+1	254176..255135	+	319	126453488	-	BURPS1106A_0270	-	NAD-dependent epimerase/dehydratase family protein
269	 70.68	0	255199..255846	+	215	126454638	-	BURPS1106A_0271	-	glutathione S-transferase domain-containing protein
270	 72.62	0	255843..257084	+	413	126451805	cca	BURPS1106A_0272	-	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
271	 71.88	0	257225..257416	-	63	126452765	-	BURPS1106A_0273	-	hypothetical protein
272	 62.61	0	257733..257954	-	73	126455267	-	BURPS1106A_0274	-	putative RebB protein
273	 69.09	0	258449..258943	-	164	126454021	-	BURPS1106A_0275	-	FlgN family flagellar protein
274	 71.59	0	258969..259313	-	114	126453570	flgM	BURPS1106A_0276	-	flagellar biosynthesis regulator protein FlgM
275	 76.84	+1	259417..260940	-	507	126453246	flgA	BURPS1106A_0277	-	flagellar basal body P-ring biosynthesis protein FlgA
276	 68.70	0	261200..261691	+	163	126451866	flgB	BURPS1106A_0278	-	flagellar basal body rod protein FlgB
277	 65.02	0	261775..262200	+	141	126454889	flgC	BURPS1106A_0279	-	flagellar basal body rod protein FlgC
278	 66.67	0	262254..263096	+	280	126454100	flgD	BURPS1106A_0280	-	flagellar basal body rod modification protein
279	 64.57	0	263124..264365	+	413	126453793	flgE	BURPS1106A_0281	-	flagellar hook protein FlgE
280	 68.77	0	264392..265153	+	253	126452329	flgF	BURPS1106A_0282	-	flagellar basal body rod protein FlgF
281	 65.78	0	265187..265975	+	262	126454438	flgG	BURPS1106A_0283	-	flagellar basal body rod protein FlgG
282	 68.46	0	265996..266718	+	240	126452858	flgH	BURPS1106A_0284	-	flagellar basal body L-ring protein
283	 70.73	0	266712..267917	+	401	126451759	flgI	BURPS1106A_0285	-	flagellar basal body P-ring protein
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.