IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2256	 71.20	0	2262823..2263770	+	315	126452558	-	BURPS1106A_2277	-	hypothetical protein
2257	 62.28	0	2263797..2264822	+	341	126452402	-	BURPS1106A_2278	-	hypothetical protein
2258	 69.12	0	2264837..2265733	+	298	126453270	-	BURPS1106A_2279	-	polysaccharide deacetylase family protein
2259	 61.26	-1	2265823..2266284	+	153	126452401	-	BURPS1106A_2280	-	anti-oxidant AhpCTSA family protein
2260	 64.07	0	2266478..2266708	-	76	126455051	-	BURPS1106A_2281	-	hypothetical protein
2261	 67.89	0	2266775..2268409	+	544	126454067	-	BURPS1106A_2282	-	PhoH family protein
2262	 74.24	+1	2268649..2269863	+	404	126454270	-	BURPS1106A_2283	-	NlpC/P60 family lipoprotein
2263	 65.58	0	2270099..2271109	-	336	126452760	-	BURPS1106A_2284	-	phosphate transporter family protein
2264	 60.93	-1	2271120..2271746	-	208	126452337	-	BURPS1106A_2285	-	hypothetical protein
2265	 65.51	0	2271885..2273267	-	460	126452188	dnaB	BURPS1106A_2286	-	replicative DNA helicase
2266	 65.12	0	2273277..2273405	-	42	126453687	-	BURPS1106A_2287	-	hypothetical protein
2267	 63.36	0	2273411..2273863	-	150	126452488	rplI	BURPS1106A_2288	-	50S ribosomal protein L9
2268	 60.14	-1	2273891..2274166	-	91	126454887	rpsR	BURPS1106A_2289	-	30S ribosomal protein S18
2269	 64.00	0	2274169..2274468	-	99	126454159	priB	BURPS1106A_2290	-	primosomal replication protein n
2270	 59.47	-1	2274505..2274879	-	124	126453081	rpsF	BURPS1106A_2291	-	30S ribosomal protein S6
2271	 73.68	+1	2275114..2276253	-	379	126452423	-	BURPS1106A_2292	-	hypothetical protein
2272	 72.32	0	2276243..2276950	-	235	126452308	-	BURPS1106A_2293	-	RNA polymerase sigma factor
2273	 66.67	0	2276965..2277093	+	42	126453681	-	BURPS1106A_2294	-	hypothetical protein
2274	 70.36	0	2277156..2278076	+	306	126452835	-	BURPS1106A_2295	-	Ser/Thr protein phosphatase family protein
2275	 72.54	0	2278087..2278512	+	141	126451612	-	BURPS1106A_2296	-	putative cytochrome c oxidase subunit
2276	 63.77	0	2278540..2278815	-	91	126454831	-	BURPS1106A_2297	-	hypothetical protein
2277	 68.64	0	2278812..2279723	-	303	126453911	-	BURPS1106A_2298	-	LysR family transcriptional regulator
2278	 68.24	0	2279886..2281661	+	591	126452983	gcl	BURPS1106A_2299	-	glyoxylate carboligase
2279	 68.31	0	2281778..2282566	+	262	126452139	-	BURPS1106A_2300	-	hydroxypyruvate isomerase
2280	 69.76	0	2282664..2283569	+	301	126455103	-	BURPS1106A_2301	-	2-hydroxy-3-oxopropionate reductase
2281	 66.81	0	2283651..2284328	+	225	126454543	-	BURPS1106A_2302	-	hypothetical protein
2282	 64.76	0	2284341..2284811	+	156	126452890	-	BURPS1106A_2304	-	hypothetical protein
2283	 70.32	0	2284772..2284990	-	72	126453403	-	BURPS1106A_2303	-	hypothetical protein
2284	 72.03	0	2284987..2286030	-	347	126451697	-	BURPS1106A_2305	-	L-asparaginase, type II
2285	 68.38	0	2286007..2286531	+	174	126452381	-	BURPS1106A_2306	-	hypothetical protein
2286	 64.95	0	2286528..2286818	+	96	126451535	psiF	BURPS1106A_2307	-	phosphate starvation-inducible protein PsiF
2287	 70.62	0	2287025..2287504	+	159	126453236	-	BURPS1106A_2309	-	hypothetical protein
2288	 67.36	0	2287498..2287641	-	47	126454130	-	BURPS1106A_2308	-	hypothetical protein
2289	 67.86	0	2287742..2288329	+	195	126451712	-	BURPS1106A_2310	-	putative lipoprotein
2290	 74.32	+1	2288341..2288562	+	73	126454208	-	BURPS1106A_2312	-	hypothetical protein
2291	 66.01	0	2288537..2289601	-	354	126455093	-	BURPS1106A_2311	-	glycosyl transferase, group 1 family protein
2292	 71.50	0	2289977..2291155	-	392	126452783	-	BURPS1106A_2313	-	hypothetical protein
2293	 70.20	0	2291435..2292622	-	395	126455055	-	BURPS1106A_2314	-	mechanosensitive ion channel family protein
2294	 68.08	0	2292689..2293042	-	117	126454163	-	BURPS1106A_2315	-	hypothetical protein
2295	 66.94	0	2293116..2293844	-	242	126453929	-	BURPS1106A_2316	-	ankyrin repeat-containing protein
2296	 67.28	0	2293855..2294664	-	269	126452010	-	BURPS1106A_2317	-	TatD family hydrolase
2297	 71.40	0	2294740..2295246	-	168	126451664	-	BURPS1106A_2318	-	acetyltransferase
2298	 73.53	+1	2295289..2296323	-	344	126452739	holB	BURPS1106A_2319	-	DNA polymerase III subunit delta'
2299	 70.05	0	2296343..2296963	-	206	126454444	tdk	BURPS1106A_2320	-	thymidylate kinase
2300	 69.12	0	2296964..2297983	-	339	126452309	-	BURPS1106A_2321	-	putative lipoprotein
2301	 72.78	0	2298062..2299108	+	348	126452702	-	BURPS1106A_2322	-	glycine cleavage T-protein (aminomethyl transferase) family protein
2302	 73.12	+1	2299179..2300030	+	283	126453769	-	BURPS1106A_2323	-	hypothetical protein
2303	 72.11	0	2300066..2300506	-	146	126452096	-	BURPS1106A_2324	-	acetyltransferase
2304	 69.98	0	2300878..2301843	-	321	126452981	-	BURPS1106A_2325	-	carboxylesterase Est2
2305	 71.67	0	2301943..2302941	-	332	126454508	-	BURPS1106A_2326	-	zinc-binding dehydrogenase family oxidoreductase
2306	 70.19	0	2303033..2303515	-	160	126453624	-	BURPS1106A_2327	-	hypothetical protein
2307	 64.44	0	2303512..2303826	-	104	126453299	-	BURPS1106A_2328	-	hypothetical protein
2308	 72.64	0	2304233..2304550	-	105	126452407	-	BURPS1106A_2329	-	hypothetical protein
2309	 62.80	0	2304578..2305042	+	154	126452089	-	BURPS1106A_2330	-	hypothetical protein
2310	 70.91	0	2305416..2306594	-	392	126451726	-	BURPS1106A_2331	-	acetyl-CoA acetyltransferase
2311	 72.30	0	2306653..2307291	-	212	126454510	pncA	BURPS1106A_2332	-	pyrazinamidase/nicotinamidase
2312	 69.40	0	2307333..2309417	-	694	126453618	-	BURPS1106A_2333	-	enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase domain-containing protein
2313	 57.50	-1	2309473..2309592	-	39	126452653	-	BURPS1106A_2334	-	hypothetical protein
2314	 67.89	0	2309661..2311301	-	546	126451552	-	BURPS1106A_2335	-	acyl-CoA synthetase
2315	 70.69	0	2311429..2312994	+	521	126454265	-	BURPS1106A_2336	-	hypothetical protein
2316	 63.38	0	2313021..2313476	+	151	126455298	msrB	BURPS1106A_2337	-	methionine-R-sulfoxide reductase
2317	 61.21	-1	2313569..2314099	+	176	126452564	ispZ	BURPS1106A_2338	-	intracellular septation protein A
2318	 69.16	0	2314096..2314416	+	106	126453541	-	BURPS1106A_2339	-	BolA/YrbA family protein
2319	 64.10	0	2314441..2315220	+	259	126452457	-	BURPS1106A_2340	-	peptidyl-prolyl cis-trans isomerase family protein
2320	 76.78	+1	2315318..2315851	-	177	126453828	-	BURPS1106A_2341	-	acetyltransferase
2321	 70.39	0	2315856..2319935	-	1359	126454235	purL	BURPS1106A_2342	-	phosphoribosylformylglycinamidine synthase
2322	 64.04	0	2320106..2320219	-	37	126455319	-	BURPS1106A_2343	-	hypothetical protein
2323	 73.41	+1	2320191..2321495	+	434	126453131	-	BURPS1106A_2344	-	putative D-amino acid dehydrogenase, small subunit
2324	 76.50	+1	2321543..2323138	+	531	126452602	-	BURPS1106A_2346	-	carbohydrate kinase family protein
2325	 71.15	0	2323130..2323285	-	51	126454291	-	BURPS1106A_2345	-	hypothetical protein
2326	 68.33	0	2323241..2324863	+	540	126451892	pgi	BURPS1106A_2347	-	glucose-6-phosphate isomerase
2327	 69.74	0	2325259..2325975	-	238	126454880	-	BURPS1106A_2348	-	ABC transporter, ATP-binding protein
2328	 70.78	0	2325968..2326648	+	226	126453719	-	BURPS1106A_2349	-	acyl-CoA thioesterase I
2329	 66.93	0	2327068..2329002	-	644	126452826	-	BURPS1106A_2350	-	PpiC-type peptidyl-prolyl cis-trans isomerase
2330	 70.42	0	2329828..2330040	-	70	126451448	-	BURPS1106A_2352	-	hypothetical protein
2331	 65.89	0	2330005..2330133	+	42	126454068	-	BURPS1106A_2353	-	hypothetical protein
2332	 74.13	+1	2330504..2330704	-	66	126453934	-	BURPS1106A_2354	-	hypothetical protein
2333	 68.75	0	2330677..2330916	-	79	126452241	-	BURPS1106A_2355	-	hypothetical protein
2334	 66.67	0	2330920..2331051	-	43	126455172	-	BURPS1106A_2356	-	hypothetical protein
2335	 66.67	0	2331181..2331675	-	164	126455183	-	BURPS1106A_2357	-	hypothetical protein
2336	 62.73	0	2332073..2332402	+	109	126454283	yfiA	BURPS1106A_2358	-	ribosomal subunit interface protein
2337	 64.75	0	2332558..2332818	+	86	126452910	-	BURPS1106A_2360	-	hypothetical protein
2338	 60.49	-1	2332914..2333075	-	53	126451854	-	BURPS1106A_2361	-	hypothetical protein
2339	 68.71	0	2333207..2333353	-	48	126455046	-	BURPS1106A_2362	-	hypothetical protein
2340	 64.10	0	2333434..2335851	-	805	126453756	lon	BURPS1106A_2363	-	ATP-dependent protease La
2341	 61.64	-1	2336047..2337318	-	423	126452859	clpX	BURPS1106A_2364	-	ATP-dependent protease ATP-binding subunit
2342	 63.91	0	2337479..2338132	-	217	126451473	clpP	BURPS1106A_2365	-	ATP-dependent Clp protease proteolytic subunit
2343	 64.22	0	2338267..2339616	-	449	126454578	tig	BURPS1106A_2366	-	trigger factor
2344	 74.56	+1	2339636..2339749	-	37	126453235	-	BURPS1106A_2367	-	hypothetical protein
2345	 76.46	+1	2340058..2341221	+	387	126453749	-	BURPS1106A_2368	-	glycerate kinase
2346	 67.11	0	2341324..2341773	+	149	126452807	-	BURPS1106A_2369	-	MarR family transcriptional regulator
2347	 74.07	+1	2341789..2342166	-	125	126451467	-	BURPS1106A_2370	-	hypothetical protein
2348	 74.05	+1	2342163..2343164	-	333	126455328	panE	BURPS1106A_2371	-	2-dehydropantoate 2-reductase
2349	 68.85	0	2343248..2344393	-	381	126451894	-	BURPS1106A_2372	-	LuxR family transcriptional regulator
2350	 70.32	0	2344727..2345794	+	355	126454572	-	BURPS1106A_2373	-	outer membrane porin
2351	 73.45	+1	2345818..2347011	+	397	126453682	-	BURPS1106A_2374	-	major facilitator family transporter
2352	 68.38	0	2347068..2348177	+	369	126454301	-	BURPS1106A_2375	-	histone deacetylase family protein putative
2353	 66.19	0	2348372..2348995	+	207	126453373	-	BURPS1106A_2376	-	endonuclease Nuc
2354	 63.93	0	2349122..2349304	-	60	126452137	-	BURPS1106A_2377	-	hypothetical protein
2355	 54.33	-2	2350242..2350703	+	153	126453628	-	BURPS1106A_2378	-	putative exported avidin family protein
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.