IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2120	 69.62	0	2126136..2127218	-	360	126451758	-	BURPS1106A_2140	-	hypothetical protein
2121	 71.13	0	2127273..2127854	-	193	126454566	-	BURPS1106A_2141	-	AsnC family transcriptional regulator
2122	 68.12	0	2127993..2128472	-	159	126453429	-	BURPS1106A_2142	-	LtxA
2123	 66.29	0	2128469..2128735	-	88	126453384	-	BURPS1106A_2143	-	amino acid adenylation:thioester reductase
2124	 69.96	0	2129663..2130178	+	171	126455117	-	BURPS1106A_2145	-	hypothetical protein
2125	 70.27	0	2130733..2131758	-	341	126451931	-	BURPS1106A_2146	-	polyhydroxybutyrate depolymerase
2126	 70.67	0	2131934..2132383	+	149	126454846	-	BURPS1106A_2147	-	hypothetical protein
2127	 69.14	0	2132750..2133154	-	134	126455014	-	BURPS1106A_2148	-	hypothetical protein
2128	 70.09	0	2133127..2133915	-	262	126452083	-	BURPS1106A_2149	-	hypothetical protein
2129	 69.54	0	2133973..2135016	-	347	126454220	-	BURPS1106A_2150	-	LacI family transcription regulator
2130	 77.48	+1	2135221..2135664	+	147	126451959	-	BURPS1106A_2152	-	hypothetical protein
2131	 72.90	0	2135624..2136601	-	325	126455132	tkrA	BURPS1106A_2151	-	gluconate 2-dehydrogenase
2132	 68.00	0	2136606..2137883	-	425	126453873	-	BURPS1106A_2153	-	major facilitator transporter
2133	 71.41	0	2137968..2138957	-	329	126454815	-	BURPS1106A_2154	-	putative 2-keto-gluconokinase
2134	 77.25	+1	2139041..2139805	-	254	126453940	-	BURPS1106A_2155	-	hypothetical protein
2135	 71.33	0	2139921..2140070	-	49	126455420	-	BURPS1106A_2156	-	hypothetical protein
2136	 72.53	0	2140101..2140475	+	124	126452429	-	BURPS1106A_2157	-	hypothetical protein
2137	 73.53	+1	2140537..2141439	-	300	126451598	-	BURPS1106A_2158	-	LysR family transcriptional regulator
2138	 71.90	0	2141550..2142620	+	356	126452478	-	BURPS1106A_2159	-	hypothetical protein
2139	 70.23	0	2142730..2144469	+	579	126451786	-	BURPS1106A_2160	-	putative voltage-gated ClC-type chloride channel ClcB
2140	 66.02	0	2144759..2145379	-	206	126454830	-	BURPS1106A_2161	-	TetR family transcriptional regulator
2141	 73.48	+1	2145588..2146703	+	371	126453824	-	BURPS1106A_2162	-	RND family efflux transporter MFP subunit
2142	 68.62	0	2146700..2149870	+	1056	126452944	-	BURPS1106A_2163	-	AcrB/AcrD/AcrF family protein
2143	 74.33	+1	2149873..2151777	+	634	126452102	-	BURPS1106A_2164	-	NodT family efflux transporter outer membrane lipoprotein
2144	 68.12	0	2152250..2153281	+	343	126455386	-	BURPS1106A_2165	-	MerR family transcriptional regulator
2145	 75.00	+1	2153513..2153632	+	39	126452665	-	BURPS1106A_2166	-	hypothetical protein
2146	 72.53	0	2153798..2154394	-	198	126452176	-	BURPS1106A_2167	-	hypothetical protein
2147	 75.52	+1	2154159..2154497	+	112	126453059	-	BURPS1106A_2168	-	hypothetical protein
2148	 65.33	0	2154644..2154868	-	74	126454323	-	BURPS1106A_2169	-	hypothetical protein
2149	 67.55	0	2154879..2155442	-	187	126455257	-	BURPS1106A_2170	-	hypothetical protein
2150	 71.06	0	2155755..2157164	-	469	126452610	-	BURPS1106A_2171	-	putative sensory box sigma-54 dependent transcriptional regulator
2151	 69.55	0	2157352..2158254	+	300	126454369	-	BURPS1106A_2172	-	metallo-beta-lactamase family protein
2152	 71.27	0	2158305..2159975	+	556	126454829	-	BURPS1106A_2173	-	pyridine nucleotide-disulfide family oxidoreductase
2153	 73.61	+1	2160015..2160821	+	268	126451693	-	BURPS1106A_2174	-	hypothetical protein
2154	 77.50	+1	2160990..2161109	+	39	126455357	-	BURPS1106A_2176	-	hypothetical protein
2155	 64.35	0	2161076..2161894	-	272	126455120	potI	BURPS1106A_2175	-	putrescine ABC transporter, permease protein PotI
2156	 62.69	0	2161891..2162820	-	309	126452007	potH	BURPS1106A_2177	-	putrescine ABC transporter, permease protein PotH
2157	 66.84	0	2162817..2163977	-	386	126453071	potG	BURPS1106A_2178	-	putrescine ABC transporter, ATP-binding protein
2158	 63.29	0	2164068..2165162	-	364	126451951	potF	BURPS1106A_2179	-	putrescine ABC transporter, periplasmic putrescine-binding protein
2159	 73.32	+1	2165549..2166856	+	435	126453069	-	BURPS1106A_2180	-	manganese/iron transporter
2160	 61.76	-1	2167267..2167470	+	67	126453703	-	BURPS1106A_2181	-	hypothetical protein
2161	 62.48	0	2167595..2168239	-	214	126454872	-	BURPS1106A_2182	-	OmpW family outer membrane protein
2162	 68.77	0	2168312..2169502	-	396	126455445	-	BURPS1106A_2183	-	2-nitropropane dioxygenase family oxidoreductase
2163	 69.31	0	2169701..2171137	-	478	126452549	-	BURPS1106A_2184	-	aldehyde dehydrogenase (NAD) family protein
2164	 60.53	-1	2171453..2172088	+	211	126453106	-	BURPS1106A_2185	-	hypothetical protein
2165	 62.71	0	2172236..2173903	-	555	126455434	-	BURPS1106A_2186	-	ABC transporter, ATP-binding protein
2166	 73.23	+1	2173872..2174252	-	126	126455427	-	BURPS1106A_2187	-	hypothetical protein
2167	 69.94	0	2174286..2176760	-	824	126454124	-	BURPS1106A_2188	-	AsmA family protein
2168	 74.43	+1	2176894..2177589	+	231	126452987	-	BURPS1106A_2189	-	ABC transporter, ATP-binding protein
2169	 69.60	0	2177586..2178404	+	272	126454892	-	BURPS1106A_2190	-	hypothetical protein
2170	 68.03	0	2178904..2179050	+	48	126454877	-	BURPS1106A_2191	-	hypothetical protein
2171	 66.85	0	2179127..2179672	-	181	126453786	-	BURPS1106A_2192	-	hypothetical protein
2172	 66.49	0	2179955..2180515	-	186	126452591	-	BURPS1106A_2193	-	hypothetical protein
2173	 67.73	0	2180558..2181403	+	281	126452316	serB	BURPS1106A_2194	-	phosphoserine phosphatase
2174	 66.92	0	2181667..2182851	-	394	126454483	metC	BURPS1106A_2195	-	cystathionine beta-lyase
2175	 74.91	+1	2183152..2183733	-	193	126452275	-	BURPS1106A_2196	-	hypothetical protein
2176	 69.63	0	2183750..2185033	-	427	126452677	bktB	BURPS1106A_2197	-	beta-ketothiolase
2177	 72.71	0	2185030..2185956	-	308	126454092	-	BURPS1106A_2198	-	PfkB family kinase
2178	 66.16	0	2185959..2187350	-	463	126454903	-	BURPS1106A_2199	-	putative tRNA modifying protein
2179	 54.97	-2	2187930..2188502	-	190	126451521	phaR	BURPS1106A_2200	-	polyhydroxyalkanoate synthesis repressor PhaR
2180	 63.56	0	2188639..2189379	-	246	126454082	phbB	BURPS1106A_2201	-	acetyacetyl-CoA reductase
2181	 69.29	0	2189505..2190686	-	393	126453858	phbA	BURPS1106A_2202	-	acetyl-CoA acetyltransferase
2182	 67.71	0	2190783..2192597	-	604	126451661	phbC	BURPS1106A_2203	-	Poly-beta-hydroxybutyrate polymerase
2183	 74.79	+1	2193114..2193950	-	278	126452453	-	BURPS1106A_2204	-	hypothetical protein
2184	 70.54	0	2193957..2195144	-	395	126454439	-	BURPS1106A_2205	-	RluA family pseudouridine synthase
2185	 64.61	0	2195198..2196022	+	274	126454430	-	BURPS1106A_2206	-	putative competence lipoprotein ComL
2186	 69.38	0	2196198..2198447	-	749	126451573	-	BURPS1106A_2207	-	putative ATP-dependent helicase
2187	 57.87	-1	2198510..2198725	-	71	126452675	-	BURPS1106A_2208	-	hypothetical protein
2188	 68.00	0	2198834..2199583	-	249	126452673	-	BURPS1106A_2209	-	putative lipoprotein
2189	 65.04	0	2199594..2199716	-	40	126453813	-	BURPS1106A_2210	-	hypothetical protein
2190	 68.47	0	2199723..2202047	+	774	126452035	-	BURPS1106A_2212	-	putative tex protein
2191	 67.69	0	2202034..2202228	-	64	126454925	-	BURPS1106A_2211	-	hypothetical protein
2192	 63.92	0	2202283..2204175	-	630	126452175	kup	BURPS1106A_2213	-	potassium uptake protein
2193	 58.97	-1	2204140..2204334	+	64	126452951	-	BURPS1106A_2214	-	hypothetical protein
2194	 63.47	0	2204468..2205061	-	197	126454348	-	BURPS1106A_2215	-	phosphoribosyl transferase domain-containing protein
2195	 67.04	0	2205068..2206414	-	448	126452740	purA	BURPS1106A_2216	-	adenylosuccinate synthetase
2196	 70.76	0	2206539..2207687	-	382	126453631	hisZ	BURPS1106A_2217	-	ATP phosphoribosyltransferase regulatory subunit
2197	 61.46	-1	2207799..2207990	-	63	126454513	-	BURPS1106A_2218	-	hypothetical protein
2198	 69.56	0	2208015..2208914	-	299	126455310	hflC	BURPS1106A_2219	-	HflC protein
2199	 70.33	0	2208931..2210295	-	454	126451985	hflK	BURPS1106A_2220	-	HflK protein
2200	 66.24	0	2210341..2211504	-	387	126451860	hflX	BURPS1106A_2221	-	GTP-binding proten HflX
2201	 54.17	-2	2211576..2211815	-	79	126452708	hfq	BURPS1106A_2222	-	RNA-binding protein Hfq
2202	 66.14	0	2211950..2213287	-	445	126454834	engA	BURPS1106A_2223	-	GTP-binding protein EngA
2203	 65.04	0	2213305..2213427	+	40	126454937	-	BURPS1106A_2224	-	hypothetical protein
2204	 69.02	0	2213563..2214708	-	381	126452965	-	BURPS1106A_2225	-	PQQ repeat-containing protein
2205	 67.46	0	2214753..2215382	-	209	126454178	-	BURPS1106A_2226	-	hypothetical protein
2206	 65.62	0	2215435..2216775	-	446	126453409	hisS	BURPS1106A_2227	-	histidyl-tRNA synthetase
2207	 69.46	0	2216794..2218044	-	416	126452211	ispG	BURPS1106A_2228	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
2208	 74.78	+1	2218188..2219198	-	336	126454923	-	BURPS1106A_2229	-	hypothetical protein
2209	 65.35	0	2219418..2220554	-	378	126453816	-	BURPS1106A_2230	-	radical SAM protein
2210	 62.68	0	2220596..2221021	-	141	126452672	ndk	BURPS1106A_2231	-	nucleoside diphosphate kinase
2211	 63.95	0	2221270..2221968	+	232	126452257	-	BURPS1106A_2232	-	hypothetical protein
2212	 67.31	0	2222042..2223439	-	465	126455291	rumA	BURPS1106A_2233	-	23S rRNA 5-methyluridine methyltransferase
2213	 72.01	0	2223517..2224377	+	286	126454152	-	BURPS1106A_2234	-	endonuclease/exonuclease/phosphatase family protein
2214	 64.74	0	2224566..2225342	-	258	126453166	-	BURPS1106A_2235	-	hypothetical protein
2215	 64.54	0	2225350..2226429	-	359	126452489	rpoS	BURPS1106A_2236	-	RNA polymerase sigma factor RpoS
2216	 68.01	0	2226441..2227331	-	296	126454413	-	BURPS1106A_2237	-	M23 family peptidase
2217	 73.27	+1	2227343..2228311	-	322	126454697	pcm	BURPS1106A_2238	-	protein-L-isoaspartate O-methyltransferase
2218	 66.93	0	2228308..2229069	-	253	126451735	surE	BURPS1106A_2239	-	stationary phase survival protein SurE
2219	 77.52	+1	2229094..2229222	+	42	126455452	-	BURPS1106A_2241	-	hypothetical protein
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.