IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1925	 67.99	0	1910501..1912762	+	753	126452615	fmtA	BURPS1106A_1945	-	ferric malleobactin transporter
1926	 68.57	0	1912827..1913666	+	279	126454608	-	BURPS1106A_1946	-	hypothetical protein
1927	 78.91	+2	1913663..1913956	+	97	126452199	-	BURPS1106A_1947	-	hypothetical protein
1928	 74.42	+1	1913973..1915571	-	532	126452925	cobB	BURPS1106A_1948	-	cobyrinic acid a,c-diamide synthase
1929	 67.16	0	1915576..1916178	-	200	126453726	-	BURPS1106A_1949	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
1930	 77.78	+1	1916237..1916677	-	146	126453668	-	BURPS1106A_1950	-	cobalamin biosynthesis protein CbiG
1931	 73.54	+1	1917555..1917743	-	62	126454723	-	BURPS1106A_1951	-	hypothetical protein
1932	 66.10	0	1917780..1918841	+	353	126451877	hoxN	BURPS1106A_1952	-	high-affinity nickel transport protein
1933	 70.48	0	1918963..1920036	+	357	126451969	cobW	BURPS1106A_1953	-	cobalamin biosynthesis protein CobW
1934	 72.59	0	1920103..1923948	+	1281	126453959	cobN	BURPS1106A_1954	-	cobaltochelatase
1935	 76.71	+1	1923945..1924442	+	165	126455143	-	BURPS1106A_1955	-	hypothetical protein
1936	 74.96	+1	1924471..1925808	+	445	126454970	-	BURPS1106A_1956	-	magnesium chelatase, subunit ChII
1937	 77.89	+1	1925889..1926503	+	204	126454843	-	BURPS1106A_1957	-	protoporphyrin IX magnesium chelatase
1938	 69.29	0	1926843..1927529	+	228	126451815	-	BURPS1106A_1958	-	phospholipase/carboxylesterase
1939	 74.44	+1	1927607..1927876	-	89	126452886	-	BURPS1106A_1959	-	hypothetical protein
1940	 68.20	0	1927873..1928199	-	108	126453025	-	BURPS1106A_1960	-	hypothetical protein
1941	 76.34	+1	1928196..1928381	-	61	126454899	-	BURPS1106A_1961	-	hypothetical protein
1942	 69.48	0	1928562..1929911	-	449	126455294	-	BURPS1106A_1962	-	glycosy hydrolase family protein
1943	 58.16	-1	1929910..1930050	+	46	126452122	-	BURPS1106A_1963	-	hypothetical protein
1944	 76.50	+1	1930268..1932097	-	609	126453452	cbiG/cobJ	BURPS1106A_1964	-	cobalamin biosynthesis protein CbiG/precorrin-3B C17-methyltransferase
1945	 69.52	0	1932094..1932828	-	244	126454586	cobI	BURPS1106A_1965	-	precorrin-2 C(20)-methyltransferase
1946	 74.00	+1	1932825..1933451	-	208	126454699	cobH	BURPS1106A_1966	-	precorrin-8X methylmutase
1947	 77.23	+1	1933444..1934892	-	482	126451806	cobG	BURPS1106A_1967	-	precorrin-3B synthase
1948	 70.44	0	1935116..1935274	-	52	126452233	-	BURPS1106A_1968	-	hypothetical protein
1949	 77.10	+1	1935290..1936516	+	408	126453534	cobL	BURPS1106A_1969	-	precorrin-6Y C5,15-methyltransferase (decarboxylating)
1950	 73.33	+1	1936513..1937607	+	364	126455155	cbiD	BURPS1106A_1970	-	cobalt-precorrin-6A synthase
1951	 78.37	+2	1937604..1938338	+	244	126452294	cobK	BURPS1106A_1971	-	cobalt-precorrin-6x reductase
1952	 71.21	0	1938677..1939402	+	241	126452848	cobM	BURPS1106A_1972	-	precorrin-4 C11-methyltransferase
1953	 70.37	0	1939481..1941046	-	521	126453950	-	BURPS1106A_1973	-	putative lipoprotein
1954	 75.70	+1	1941176..1942360	-	394	126451808	-	BURPS1106A_1974	-	major facilitator family transporter
1955	 72.12	0	1942484..1942978	+	164	126452741	-	BURPS1106A_1975	-	MarR family transcriptional regulator
1956	 76.87	+1	1943133..1943279	-	48	126453202	-	BURPS1106A_1976	-	hypothetical protein
1957	 69.21	0	1943286..1944584	-	432	126452565	-	BURPS1106A_1977	-	putative transporter, periplasmic substrate-binding protein
1958	 72.73	0	1944622..1944753	-	43	126453473	-	BURPS1106A_1978	-	MarR family transcriptional regulator
1959	 71.72	0	1944726..1945160	-	144	126454615	-	BURPS1106A_1979	-	transcriptional regulator
1960	 65.53	0	1945703..1946407	-	234	126452802	-	BURPS1106A_1980	-	putative glutathione S-transferase
1961	 70.58	0	1946692..1947612	-	306	126454207	-	BURPS1106A_1981	-	LysR family transcriptional regulator
1962	 74.22	+1	1947710..1948159	+	149	126455000	-	BURPS1106A_1982	-	hypothetical protein
1963	 72.08	0	1948156..1948950	+	264	126452344	-	BURPS1106A_1983	-	short chain dehydrogenase
1964	 78.97	+2	1949042..1949236	+	64	126452566	-	BURPS1106A_1985	-	hypothetical protein
1965	 69.64	0	1949193..1950134	-	313	126452232	arcC	BURPS1106A_1984	-	carbamate kinase
1966	 64.99	0	1950220..1951230	-	336	126454759	arcB	BURPS1106A_1986	-	ornithine carbamoyltransferase
1967	 67.21	0	1951295..1952572	-	425	126453511	arcA	BURPS1106A_1987	-	arginine deiminase
1968	 66.67	0	1952569..1954029	-	486	126453054	arcD	BURPS1106A_1988	-	arginine/ornithine antiporter
1969	 66.44	0	1954012..1954461	+	149	126451754	-	BURPS1106A_1989	-	hypothetical protein
1970	 50.30	-2	1954508..1954672	+	54	126454950	-	BURPS1106A_1990	-	hypothetical protein
1971	 75.79	+1	1954791..1955327	-	178	126453764	-	BURPS1106A_1991	-	hypothetical protein
1972	 73.75	+1	1955363..1956181	-	272	126453122	-	BURPS1106A_1992	-	amine ABC transporter, permease protein
1973	 73.70	+1	1956178..1957116	-	312	126452251	-	BURPS1106A_1993	-	amine ABC transporter, ATP-binding protein
1974	 75.76	+1	1957113..1958333	-	406	126455455	-	BURPS1106A_1994	-	amine ABC transporter, permease protein
1975	 67.94	0	1958330..1959268	-	312	126452444	-	BURPS1106A_1995	-	amine ABC transporter, periplasmic amine-binding protein
1976	 62.50	0	1959514..1959633	+	39	126455175	-	BURPS1106A_1996	-	hypothetical protein
1977	 69.91	0	1959630..1960400	+	256	126452860	-	BURPS1106A_1997	-	putative methyltransferase UbiE
1978	 74.79	+1	1960757..1962160	-	467	126454631	-	BURPS1106A_1998	-	major facilitator family transporter
1979	 72.94	0	1962231..1964207	-	658	126453478	-	BURPS1106A_1999	-	acyl-CoA synthetase
1980	 61.38	-1	1964607..1964795	+	62	126453374	-	BURPS1106A_2000	-	hypothetical protein
1981	 67.71	0	1964832..1965119	-	95	126452247	-	BURPS1106A_2001	-	hypothetical protein
1982	 69.88	0	1965509..1967251	+	580	126452078	-	BURPS1106A_2002	-	methyl-accepting chemotaxis protein
1983	 67.25	0	1967289..1967801	+	170	126454971	cheW	BURPS1106A_2003	-	chemotaxis protein CheW
1984	 76.19	+1	1967844..1967969	+	41	126452648	-	BURPS1106A_2004	-	hypothetical protein
1985	 75.52	+1	1967992..1968183	-	63	126451774	-	BURPS1106A_2005	-	hypothetical protein
1986	 73.70	+1	1968220..1968930	-	236	126453870	-	BURPS1106A_2006	-	mtultidrug ABC transporter permease
1987	 72.16	0	1969095..1969895	-	266	126453949	-	BURPS1106A_2007	-	AraC family transcriptional regulator
1988	 71.79	0	1969878..1970072	+	64	126451847	-	BURPS1106A_2008	-	oxidoreductase
1989	 68.71	0	1970243..1971466	+	407	126454684	-	BURPS1106A_2009	-	outer membrane porin
1990	 72.96	0	1971697..1971966	+	89	126453464	-	BURPS1106A_2011	-	hypothetical protein
1991	 70.55	0	1971924..1973801	-	625	126454659	-	BURPS1106A_2010	-	putative non-ribosomal peptide synthase
1992	 59.66	-1	1974960..1975844	+	294	126453337	-	BURPS1106A_2012	-	JmjC domain-containing protein
1993	 64.59	0	1975906..1976916	+	336	126452208	-	BURPS1106A_2013	-	putative histidinol-phosphate aminotransferase HisC
1994	 60.39	-1	1976944..1978026	+	360	126454002	-	BURPS1106A_2014	-	hypothetical protein
1995	 61.90	-1	1978082..1978900	+	272	126451800	-	BURPS1106A_2015	-	putative formyltransferase
1996	 66.17	0	1978941..1980155	+	404	126451449	argG	BURPS1106A_2016	-	argininosuccinate synthase
1997	 68.38	0	1980152..1981552	+	466	126452580	argH	BURPS1106A_2017	-	argininosuccinate lyase
1998	 67.00	0	1981570..1982466	+	298	126453654	-	BURPS1106A_2018	-	GHMP kinase ATP-binding subunit
1999	 64.07	0	1982520..1983752	+	410	126454562	-	BURPS1106A_2019	-	major facilitator family transporter
2000	 71.03	0	1983749..1984390	+	213	126452989	-	BURPS1106A_2020	-	hypothetical protein
2001	 70.39	0	1984387..1985514	+	375	126452738	-	BURPS1106A_2021	-	cysteine synthase
2002	 73.03	+1	1985549..1988251	+	900	126454180	-	BURPS1106A_2022	-	argininosuccinate lyase
2003	 71.49	0	1988294..1989454	+	386	126454958	-	BURPS1106A_2023	-	L-allo-threonine aldolase
2004	 67.14	0	1989451..1990083	+	210	126452385	-	BURPS1106A_2024	-	acetyltransferase
2005	 72.72	0	1990080..2008898	+	6272	126453313	-	BURPS1106A_2025	-	putative syringomycin synthetase
2006	 58.33	-1	2008904..2009023	+	39	126452350	-	BURPS1106A_2026	-	hypothetical protein
2007	 65.68	0	2008989..2010710	+	573	126454991	-	BURPS1106A_2027	-	carbamoyltransferase family protein
2008	 73.70	+1	2010835..2013207	+	790	126454080	-	BURPS1106A_2028	-	putative penicillin amidase
2009	 66.67	0	2014661..2014972	+	103	126452733	-	BURPS1106A_2029	-	hypothetical protein
2010	 63.04	0	2015036..2015917	+	293	126451597	-	BURPS1106A_2030	-	hypothetical protein
2011	 66.67	0	2015907..2016686	+	259	126454541	-	BURPS1106A_2031	-	hypothetical protein
2012	 66.87	0	2016692..2017195	+	167	126453399	-	BURPS1106A_2032	-	hypothetical protein
2013	 66.67	0	2017261..2017902	+	213	126452190	-	BURPS1106A_2033	-	putative transmembrane protein DUF1109
2014	 70.09	0	2017921..2018562	-	213	126453352	-	BURPS1106A_2034	-	putative transmembrane protein DUF1109
2015	 63.13	0	2018559..2019095	-	178	126452202	-	BURPS1106A_2035	-	RNA polymerase sigma factor
2016	 64.94	0	2019254..2019427	-	57	126454953	-	BURPS1106A_2036	-	hypothetical protein
2017	 61.29	-1	2020016..2020294	+	92	126452340	-	BURPS1106A_2037	-	transposase subunit; putative
2018	 64.53	0	2020431..2020805	+	124	126454649	-	BURPS1106A_2038	-	rhodanese domain-containing protein
2019	 69.16	0	2020858..2022138	-	426	126451874	amaB	BURPS1106A_2039	-	allantoate amidohydrolase
2020	 69.26	0	2022135..2023520	-	461	126453113	-	BURPS1106A_2040	-	putative D-hydantoinase
2021	 65.99	0	2023620..2024510	+	296	126453947	-	BURPS1106A_2041	-	LysR family transcriptional regulator
2022	 68.22	0	2024691..2025782	+	363	126451937	-	BURPS1106A_2042	-	hypothetical protein
2023	 67.76	0	2025801..2027441	+	546	126452716	-	BURPS1106A_2043	-	urocanate hydratase
2024	 69.46	0	2027478..2028800	+	440	126453686	-	BURPS1106A_2044	-	MFS transporter, metabolite:H+ symporter (MHS) family protein
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.