IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1850	 70.16	0	1823350..1824381	+	343	126454096	rbsR	BURPS1106A_1870	-	ribose operon repressor RbsR
1851	 77.64	+1	1824378..1825352	+	324	126453421	rbsK	BURPS1106A_1871	-	ribokinase
1852	 71.35	0	1825565..1827445	+	626	126451531	-	BURPS1106A_1872	-	methyl-accepting chemotaxis protein
1853	 61.05	-1	1828296..1830218	+	640	126454647	prkA	BURPS1106A_1873	-	serine protein kinase
1854	 63.51	0	1830342..1831607	+	421	126452511	-	BURPS1106A_1874	-	hypothetical protein
1855	 63.46	0	1831607..1833289	+	560	126451642	-	BURPS1106A_1875	-	hypothetical protein
1856	 75.26	+1	1833256..1833546	+	96	126451842	-	BURPS1106A_1876	-	hypothetical protein
1857	 66.97	0	1833716..1835020	+	434	126451917	-	BURPS1106A_1877	-	alpha-ketoglutarate permease
1858	 69.53	0	1835273..1836319	+	348	126452998	-	BURPS1106A_1878	-	ABC transporter substrate binding protein
1859	 66.03	0	1836371..1836685	+	104	126452114	-	BURPS1106A_1879	-	hypothetical protein
1860	 71.12	0	1836780..1837610	+	276	126455247	-	BURPS1106A_1880	-	ABC transporter, ATP-binding protein
1861	 72.74	0	1837607..1838578	+	323	126454363	-	BURPS1106A_1881	-	ABC transporter, permease protein
1862	 61.98	-1	1839135..1839326	+	63	126454658	-	BURPS1106A_1882	-	Flp/Fap pilin
1863	 76.88	+1	1839352..1839870	+	172	126455283	-	BURPS1106A_1883	-	peptidase A24A, prepilin type IV
1864	 76.92	+1	1839883..1840935	+	350	126452162	-	BURPS1106A_1884	-	putative pilus assembly protein CpaB
1865	 70.95	0	1840970..1842418	+	482	126453026	-	BURPS1106A_1885	-	type II/III secretion system protein
1866	 77.05	+1	1842452..1842865	+	137	126452011	-	BURPS1106A_1886	-	putative lipoprotein
1867	 74.35	+1	1842876..1844111	+	411	126453450	-	BURPS1106A_1887	-	putative CpaE protein
1868	 71.18	0	1844111..1845682	+	523	126452852	-	BURPS1106A_1888	-	type IV pilus assembly protein
1869	 73.29	+1	1845679..1846674	+	331	126452248	-	BURPS1106A_1889	-	type II secretion system protein
1870	 72.38	0	1846671..1847615	+	314	126454623	-	BURPS1106A_1890	-	type II secretion system protein
1871	 75.15	+1	1847759..1848760	+	333	126454065	-	BURPS1106A_1891	-	TPR repeat-containing protein
1872	 67.83	0	1848757..1849185	+	142	126452631	-	BURPS1106A_1892	-	TadE family protein
1873	 73.35	+1	1849178..1850209	+	343	126453566	-	BURPS1106A_1894	-	TadE family protein
1874	 76.39	+1	1850173..1850316	-	47	126454855	-	BURPS1106A_1893	-	hypothetical protein
1875	 65.20	0	1850489..1851304	+	271	126454167	-	BURPS1106A_1895	-	putative amino acid ABC transporter, periplasmic amino acid-binding protein
1876	 75.00	+1	1851349..1851468	+	39	126455214	-	BURPS1106A_1896	-	hypothetical protein
1877	 71.73	0	1851465..1851701	+	78	126453791	-	BURPS1106A_1897	-	hypothetical protein
1878	 71.07	0	1851703..1852428	+	241	126452880	-	BURPS1106A_1898	-	His/Glu/Gln/Arg/opine amino acid ABC transporter permease
1879	 71.10	0	1852431..1853174	+	247	126451643	-	BURPS1106A_1899	-	His/Glu/Gln/Arg/opine amino acid ABC transporter permease
1880	 74.36	+1	1853216..1854631	-	471	126451678	-	BURPS1106A_1900	-	M24/M37 family peptidase
1881	 56.30	-2	1854773..1854907	+	44	126454315	-	BURPS1106A_1901	-	hypothetical protein
1882	 70.39	0	1854973..1855644	-	223	126453336	amrR	BURPS1106A_1902	-	multidrug efflux operon transciptional regulator AmrR
1883	 73.83	+1	1855788..1856987	+	399	126451999	amrA	BURPS1106A_1903	-	periplasmic multidrug efflux lipoprotein precursor
1884	 68.87	0	1857004..1860135	+	1043	126454286	amrB	BURPS1106A_1904	-	multidrug efflux protein
1885	 74.40	+1	1860132..1861682	+	516	126455205	oprA	BURPS1106A_1905	-	outer membrane efflux protein OprA
1886	 74.21	+1	1862046..1862204	-	52	126452400	-	BURPS1106A_1906	-	hypothetical protein
1887	 52.63	-2	1862847..1863188	+	113	126455062	-	BURPS1106A_1907	-	hypothetical protein
1888	 45.19	-2	1863385..1863519	+	44	126453759	-	BURPS1106A_1908	-	hypothetical protein
1889	 67.25	0	1863636..1864148	+	170	126453258	-	BURPS1106A_1909	-	fimbrial protein
1890	 69.90	0	1864298..1866739	+	813	126452598	-	BURPS1106A_1910	-	fimbrial usher protein
1891	 70.53	0	1866918..1867667	+	249	126451496	yfcS	BURPS1106A_1911	-	fimbrial chaperone yfcS precursor
1892	 66.95	0	1867631..1868689	+	352	126452062	-	BURPS1106A_1912	-	hypothetical protein
1893	 71.21	0	1868740..1870500	-	586	126455442	-	BURPS1106A_1913	-	ABC transporter, ATP-binding protein
1894	 74.42	+1	1870497..1870625	-	42	126453125	-	BURPS1106A_1914	-	hypothetical protein
1895	 70.79	0	1870634..1872235	-	533	126452006	-	BURPS1106A_1915	-	asparagine synthase
1896	 66.53	0	1872312..1873022	-	236	126451596	-	BURPS1106A_1916	-	hypothetical protein
1897	 59.03	-1	1873075..1873218	-	47	126454805	-	BURPS1106A_1917	-	hypothetical protein
1898	 67.96	0	1873458..1873766	-	102	126454345	-	BURPS1106A_1918	-	hypothetical protein
1899	 68.18	0	1873815..1874804	+	329	126452445	-	BURPS1106A_1919	-	AraC family transcriptional regulator
1900	 68.35	0	1874906..1875853	+	315	126453551	-	BURPS1106A_1920	-	carbohydrate ABC transporter periplasmic sugar-binding protein
1901	 70.15	0	1875847..1877454	+	535	126453379	-	BURPS1106A_1921	-	carbohydrate ABC transporter ATP-binding protein
1902	 72.16	0	1877447..1878466	+	339	126451811	-	BURPS1106A_1922	-	carbohydrate ABC transporter permease
1903	 76.19	+1	1878463..1878672	+	69	126454701	-	BURPS1106A_1923	-	hypothetical protein
1904	 69.05	0	1878669..1879760	+	363	126452815	-	BURPS1106A_1924	-	zinc-binding dehydrogenase family oxidoreductase
1905	 72.63	0	1879791..1881332	+	513	126452954	-	BURPS1106A_1925	-	carbohydrate kinase
1906	 73.23	+1	1881329..1882075	+	248	126454530	-	BURPS1106A_1926	-	short chain dehydrogenase
1907	 83.33	+2	1882156..1882287	+	43	126451883	-	BURPS1106A_1927	-	hypothetical protein
1908	 74.60	+1	1882284..1882409	+	41	126453981	-	BURPS1106A_1929	-	hypothetical protein
1909	 77.78	+1	1882370..1882612	-	80	126453115	-	BURPS1106A_1928	-	hypothetical protein
1910	 70.00	0	1882681..1883100	+	139	126455334	-	BURPS1106A_1930	-	hypothetical protein
1911	 72.13	0	1883135..1883848	+	237	126452200	-	BURPS1106A_1931	-	extracytoplasmic-function sigma-70 factor PvdS
1912	 73.25	+1	1883904..1884146	+	80	126453623	-	BURPS1106A_1932	-	mbtH domain-containing protein
1913	 71.16	0	1884220..1885221	+	333	126454451	-	BURPS1106A_1933	-	putative syringomycin biosynthesis enzyme
1914	 73.96	+1	1885259..1886149	+	296	126453693	-	BURPS1106A_1934	-	iron chelate ABC transporter ATP-binding protein
1915	 78.12	+1	1886146..1888266	+	706	126454568	-	BURPS1106A_1935	-	iron-hydroxamate transporter permease subunit
1916	 72.24	0	1888263..1889069	+	268	126455113	-	BURPS1106A_1936	-	ferric iron reductase protein
1917	 75.27	+1	1889066..1890262	+	398	126453996	-	BURPS1106A_1937	-	iron compound ABC transporter, periplasmic iron-compound-binding protein
1918	 69.97	0	1890440..1891015	-	191	126453284	-	BURPS1106A_1938	-	hypothetical protein
1919	 78.89	+2	1891224..1891403	+	59	126452245	-	BURPS1106A_1939	-	hypothetical protein
1920	 70.34	0	1891503..1893191	-	562	126453656	-	BURPS1106A_1940	-	cyclic peptide ABC transporter, ATP-binding protein MbaE
1921	 69.44	0	1893574..1893753	-	59	126452537	-	BURPS1106A_1941	-	hypothetical protein
1922	 75.80	+1	1893832..1903704	+	3290	126452413	-	BURPS1106A_1942	-	putative siderophore non-ribosomal peptide synthetase MbaJ
1923	 75.76	+1	1903753..1908951	+	1732	126455324	-	BURPS1106A_1943	-	putative siderophore non-ribosomal peptide synthetase MbaI
1924	 70.78	0	1908993..1910501	+	502	126453761	-	BURPS1106A_1944	-	putative L-ornithine 5-monooxygenase MbaA
1925	 67.99	0	1910501..1912762	+	753	126452615	fmtA	BURPS1106A_1945	-	ferric malleobactin transporter
1926	 68.57	0	1912827..1913666	+	279	126454608	-	BURPS1106A_1946	-	hypothetical protein
1927	 78.91	+2	1913663..1913956	+	97	126452199	-	BURPS1106A_1947	-	hypothetical protein
1928	 74.42	+1	1913973..1915571	-	532	126452925	cobB	BURPS1106A_1948	-	cobyrinic acid a,c-diamide synthase
1929	 67.16	0	1915576..1916178	-	200	126453726	-	BURPS1106A_1949	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
1930	 77.78	+1	1916237..1916677	-	146	126453668	-	BURPS1106A_1950	-	cobalamin biosynthesis protein CbiG
1931	 73.54	+1	1917555..1917743	-	62	126454723	-	BURPS1106A_1951	-	hypothetical protein
1932	 66.10	0	1917780..1918841	+	353	126451877	hoxN	BURPS1106A_1952	-	high-affinity nickel transport protein
1933	 70.48	0	1918963..1920036	+	357	126451969	cobW	BURPS1106A_1953	-	cobalamin biosynthesis protein CobW
1934	 72.59	0	1920103..1923948	+	1281	126453959	cobN	BURPS1106A_1954	-	cobaltochelatase
1935	 76.71	+1	1923945..1924442	+	165	126455143	-	BURPS1106A_1955	-	hypothetical protein
1936	 74.96	+1	1924471..1925808	+	445	126454970	-	BURPS1106A_1956	-	magnesium chelatase, subunit ChII
1937	 77.89	+1	1925889..1926503	+	204	126454843	-	BURPS1106A_1957	-	protoporphyrin IX magnesium chelatase
1938	 69.29	0	1926843..1927529	+	228	126451815	-	BURPS1106A_1958	-	phospholipase/carboxylesterase
1939	 74.44	+1	1927607..1927876	-	89	126452886	-	BURPS1106A_1959	-	hypothetical protein
1940	 68.20	0	1927873..1928199	-	108	126453025	-	BURPS1106A_1960	-	hypothetical protein
1941	 76.34	+1	1928196..1928381	-	61	126454899	-	BURPS1106A_1961	-	hypothetical protein
1942	 69.48	0	1928562..1929911	-	449	126455294	-	BURPS1106A_1962	-	glycosy hydrolase family protein
1943	 58.16	-1	1929910..1930050	+	46	126452122	-	BURPS1106A_1963	-	hypothetical protein
1944	 76.50	+1	1930268..1932097	-	609	126453452	cbiG/cobJ	BURPS1106A_1964	-	cobalamin biosynthesis protein CbiG/precorrin-3B C17-methyltransferase
1945	 69.52	0	1932094..1932828	-	244	126454586	cobI	BURPS1106A_1965	-	precorrin-2 C(20)-methyltransferase
1946	 74.00	+1	1932825..1933451	-	208	126454699	cobH	BURPS1106A_1966	-	precorrin-8X methylmutase
1947	 77.23	+1	1933444..1934892	-	482	126451806	cobG	BURPS1106A_1967	-	precorrin-3B synthase
1948	 70.44	0	1935116..1935274	-	52	126452233	-	BURPS1106A_1968	-	hypothetical protein
1949	 77.10	+1	1935290..1936516	+	408	126453534	cobL	BURPS1106A_1969	-	precorrin-6Y C5,15-methyltransferase (decarboxylating)
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.