IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
137	 74.64	+1	132736..132873	+	45	126454673	-	BURPS1106A_0137	-	hypothetical protein
138	 66.49	0	133053..133622	-	189	126451523	-	BURPS1106A_0138	-	hypothetical protein
139	 71.31	0	133725..134693	-	322	126454337	-	BURPS1106A_0139	-	LysR family transcriptional regulator
140	 65.02	0	134836..135930	+	364	126455252	-	BURPS1106A_0140	-	extracellular solute-binding protein
141	 70.17	0	135959..137071	+	370	126452138	-	BURPS1106A_0141	-	histone deacetylase family protein
142	 67.47	0	137082..137957	+	291	126453061	-	BURPS1106A_0142	-	carbon-nitrogen family hydrolase
143	 69.89	0	138094..138558	-	154	126453853	-	BURPS1106A_0143	-	hypothetical protein
144	 64.95	0	138530..139111	-	193	126454811	-	BURPS1106A_0144	-	hypothetical protein
145	 65.29	0	139035..140048	+	337	126451629	-	BURPS1106A_0145	-	PBSX family phage portal protein
146	 64.99	0	140092..140448	-	118	126452496	-	BURPS1106A_0146	-	addiction module antidote protein
147	 57.70	-1	141073..141897	-	274	126453891	-	BURPS1106A_0147	-	hypothetical protein
148	 62.47	0	142499..142903	+	134	126454726	-	BURPS1106A_0149	-	thioesterase family protein
149	 69.66	0	142941..143810	+	289	126451606	-	BURPS1106A_0150	-	patatin family phospholipase
150	 82.11	+2	143834..143956	+	40	126454609	-	BURPS1106A_0152	-	hypothetical protein
151	 66.86	0	143931..144947	-	338	126452528	gyaR	BURPS1106A_0151	-	glyoxylate reductase
152	 67.23	0	145386..146441	+	351	126451470	-	BURPS1106A_0153	-	LysR family transcriptional regulator
153	 78.63	+2	146553..146669	-	38	126452814	-	BURPS1106A_0154	-	hypothetical protein
154	 64.46	0	146666..149386	-	906	126453699	topB	BURPS1106A_0155	-	DNA topoisomerase III
155	 65.32	0	149486..149857	-	123	126454243	-	BURPS1106A_0156	-	hypothetical protein
156	 72.95	0	149917..151221	-	434	126455418	dprA	BURPS1106A_0157	-	DNA protecting protein DprA
157	 67.50	0	151218..151337	-	39	126452019	-	BURPS1106A_0158	-	hypothetical protein
158	 61.48	-1	151300..151839	+	179	126453149	def	BURPS1106A_0159	-	polypeptide deformylase
159	 72.76	0	151871..152854	+	327	126454119	fmt	BURPS1106A_0160	-	methionyl-tRNA formyltransferase
160	 67.48	0	152870..152992	-	40	126455012	-	BURPS1106A_0161	-	hypothetical protein
161	 66.82	0	152975..153610	+	211	126451862	-	BURPS1106A_0162	-	LysE family translocator protein
162	 65.15	0	153720..154577	+	285	126452704	-	BURPS1106A_0163	-	heat shock protein HtpX
163	 71.70	0	154758..155174	+	138	126454661	-	BURPS1106A_0164	-	acetate permease
164	 72.48	0	155171..156580	+	469	126451630	sun	BURPS1106A_0165	-	ribosomal RNA small subunit methyltransferase B
165	 64.30	0	156577..157167	+	196	126452437	-	BURPS1106A_0166	-	hypothetical protein
166	 66.75	0	157169..159577	+	802	126453271	-	BURPS1106A_0167	-	sensor histidine kinase
167	 69.01	0	159578..160261	+	227	126453538	-	BURPS1106A_0168	-	Fis family DNA-binding response regulator
168	 68.47	0	160528..160749	+	73	126454381	-	BURPS1106A_0170	-	hypothetical protein
169	 66.39	0	160730..161464	+	244	126455276	-	BURPS1106A_0171	-	exsB protein
170	 66.35	0	161558..162190	+	210	126452181	-	BURPS1106A_0172	-	hypothetical protein
171	 62.69	0	162210..162662	+	150	126452633	-	BURPS1106A_0173	-	putative 6-pyruvoyl tetrahydropterin synthase
172	 63.83	0	162709..162849	+	46	126451563	-	BURPS1106A_0174	-	hypothetical protein
173	 73.16	+1	163087..163872	+	261	126454865	-	BURPS1106A_0175	-	HpcH/HpaI aldolase/citrate lyase family protein
174	 74.13	+1	163869..164645	+	258	126453702	-	BURPS1106A_0176	-	hypothetical protein
175	 65.36	0	165022..166170	-	382	126453176	rodA	BURPS1106A_0177	-	rod shape-determining protein RodA
176	 68.93	0	166182..168611	-	809	126454848	-	BURPS1106A_0178	-	putative penicillin-binding protein
177	 68.23	0	168795..169307	-	170	126455244	mreD	BURPS1106A_0179	-	rod shape-determining protein MreD
178	 71.23	0	169304..170377	-	357	126454150	mreC	BURPS1106A_0180	-	rod shape-determining protein MreC
179	 64.94	0	170497..171540	-	347	126452347	mreB	BURPS1106A_0181	-	rod shape-determining protein MreB
180	 67.33	0	171906..172205	+	99	126455226	gatC	BURPS1106A_0182	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
181	 70.22	0	172318..173808	+	496	126455152	gatA	BURPS1106A_0183	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
182	 65.65	0	173811..175283	+	490	126453954	gatB	BURPS1106A_0184	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
183	 65.95	0	175410..176249	+	279	126453377	-	BURPS1106A_0185	-	polyphosphate kinase
184	 62.39	0	176281..177051	+	256	126452249	xth	BURPS1106A_0186	-	exodeoxyribonuclease III
185	 65.92	0	177346..178410	-	354	126453715	-	BURPS1106A_0187	-	zinc-binding dehydrogenase family oxidoreductase
186	 70.26	0	178620..179564	+	314	126452647	-	BURPS1106A_0188	-	AraC family transcriptional regulator
187	 73.31	+1	179938..180990	-	350	126452125	-	BURPS1106A_0189	-	hypothetical protein
188	 66.97	0	180980..182293	-	437	126454886	-	BURPS1106A_0190	-	major facilitator transporter
189	 63.58	0	182305..182919	-	204	126454422	metW	BURPS1106A_0191	-	methionine biosynthesis protein MetW
190	 66.58	0	182916..184061	-	381	126453127	metX	BURPS1106A_0192	-	homoserine O-acetyltransferase
191	 68.41	0	184414..185103	-	229	126454066	slmA	BURPS1106A_0193	-	nucleoid occlusion protein
192	 70.15	0	185070..185873	-	267	126453385	-	BURPS1106A_0194	-	HAD-superfamily hydrolase
193	 64.22	0	185870..186769	-	299	126452255	argB	BURPS1106A_0195	-	acetylglutamate kinase
194	 65.85	0	186946..187068	-	40	126451498	-	BURPS1106A_0196	-	hypothetical protein
195	 78.17	+1	187094..187345	+	83	126454885	-	BURPS1106A_0197	-	hypothetical protein
196	 69.01	0	187363..188643	+	426	126453480	-	BURPS1106A_0198	-	sensor histidine kinase
197	 66.30	0	188663..189205	+	180	126452974	-	BURPS1106A_0199	-	Fis family DNA-binding response regulator
198	 64.29	0	189632..190975	-	447	126452107	hslU	BURPS1106A_0200	-	ATP-dependent protease ATP-binding subunit
199	 68.87	0	190985..191620	-	211	126451912	hslV	BURPS1106A_0201	-	ATP-dependent protease peptidase subunit
200	 73.50	+1	191626..191742	-	38	126452750	-	BURPS1106A_0202	-	hypothetical protein
201	 60.67	-1	191783..192199	-	138	126455040	dksA	BURPS1106A_0203	-	RNA polymerase-binding protein DksA
202	 66.38	0	192254..192598	-	114	126452341	-	BURPS1106A_0204	-	hypothetical protein
203	 62.12	-1	192760..193836	-	358	126453239	-	BURPS1106A_0205	-	CobW/P47K family protein
204	 70.50	0	194014..195291	-	425	126454780	-	BURPS1106A_0206	-	hypothetical protein
205	 69.67	0	195380..196312	-	310	126451479	xerC	BURPS1106A_0207	-	site-specific tyrosine recombinase XerC
206	 71.14	0	196357..197094	-	245	126452571	-	BURPS1106A_0208	-	hypothetical protein
207	 70.57	0	197118..197987	-	289	126453808	dapF	BURPS1106A_0209	-	diaminopimelate epimerase
208	 66.33	0	198028..198912	-	294	126454911	htrB	BURPS1106A_0210	-	lipid A biosynthesis lauroyl acyltransferase
209	 67.09	0	199179..200366	+	395	126451461	metK	BURPS1106A_0211	-	S-adenosylmethionine synthetase
210	 73.45	+1	200534..200887	-	117	126452679	-	BURPS1106A_0212	-	hypothetical protein
211	 66.22	0	201131..202024	+	297	126454571	-	BURPS1106A_0213	-	phytanoyl-CoA dioxygenase (PhyH) family protein
212	 69.40	0	202108..202290	-	60	126451701	-	BURPS1106A_0214	-	hypothetical protein
213	 64.73	0	202307..202513	-	68	126452493	-	BURPS1106A_0215	-	hypothetical protein
214	 65.61	0	202592..203731	+	379	126454356	-	BURPS1106A_0216	-	aldo/keto reductase family oxidoreductase
215	 68.28	0	203818..204003	-	61	126454634	-	BURPS1106A_0217	-	hypothetical protein
216	 71.14	0	204271..205209	-	312	126451814	-	BURPS1106A_0218	-	hypothetical protein
217	 73.00	+1	205256..205492	-	78	126453971	-	BURPS1106A_0219	-	hypothetical protein
218	 71.86	0	205489..206778	-	429	126455134	-	BURPS1106A_0220	-	major facilitator family transporter
219	 65.59	0	206841..207026	-	61	126453988	-	BURPS1106A_0221	-	hypothetical protein
220	 56.82	-2	207002..207133	-	43	126455185	-	BURPS1106A_0222	-	hypothetical protein
221	 65.26	0	207132..207344	+	70	126453733	-	BURPS1106A_0223	-	hypothetical protein
222	 69.09	0	207385..208416	+	343	126454046	-	BURPS1106A_0224	-	serine/threonine protein kinase
223	 74.40	+1	208693..209028	-	111	126452557	-	BURPS1106A_0225	-	hypothetical protein
224	 68.50	0	209085..210503	-	472	126452218	-	BURPS1106A_0226	-	putative coniferyl aldehyde dehydrogenase
225	 69.82	0	210538..212217	-	559	126454819	-	BURPS1106A_0227	-	acyl-CoA dehydrogenase domain-containing protein
226	 69.16	0	212451..214094	+	547	126453931	-	BURPS1106A_0228	-	GMC family oxidoreductase
227	 76.62	+1	214134..215510	-	458	126454663	fliK	BURPS1106A_0229	-	flagellar hook-length control protein FliK
228	 71.52	0	215567..216019	-	150	126453479	fliJ	BURPS1106A_0230	-	flagellar export protein FliJ
229	 72.52	0	216025..217596	-	523	126453967	fliI	BURPS1106A_0231	-	flagellar protein export ATPase FliI
230	 73.86	+1	217590..218270	-	226	126453050	fliH	BURPS1106A_0232	-	flagellar assembly protein H
231	 64.66	0	218263..219258	-	331	126452132	fliG	BURPS1106A_0233	-	flagellar motor switch protein G
232	 69.78	0	219248..221044	-	598	126453288	fliF	BURPS1106A_0234	-	flagellar MS-ring protein
233	 65.50	0	221293..221634	+	113	126453483	fliE	BURPS1106A_0235	-	flagellar hook-basal body complex protein FliE
234	 66.67	0	221756..222190	+	144	126454587	fliS	BURPS1106A_0236	-	flagellar protein FliS
235	 69.11	0	222187..222513	+	108	126454593	-	BURPS1106A_0237	-	hypothetical protein
236	 78.51	+2	222623..224125	+	500	126451708	-	BURPS1106A_0238	-	hypothetical protein
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.