IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1786	 66.37	0	1762635..1763633	-	332	126451524	-	BURPS1106A_1801	-	hypothetical protein
1787	 65.99	0	1763654..1765426	-	590	126454267	fadD	BURPS1106A_1803	-	long-chain-fatty-acid--CoA ligase
1788	 70.18	0	1765423..1765536	-	37	126455258	-	BURPS1106A_1804	-	hypothetical protein
1789	 70.56	0	1765611..1766561	-	316	126452031	-	BURPS1106A_1805	-	TetR family transcriptional regulator
1790	 66.83	0	1766778..1768004	-	408	126453926	-	BURPS1106A_1806	-	major facilitator superfamily transporter sialate:H(+) symporter
1791	 73.02	+1	1768207..1768395	-	62	126454782	-	BURPS1106A_1807	-	hypothetical protein
1792	 70.09	0	1768414..1768968	+	184	126451652	-	BURPS1106A_1808	-	acetyltransferase
1793	 65.87	0	1769112..1769738	+	208	126452499	-	BURPS1106A_1809	-	hypothetical protein
1794	 70.99	0	1769785..1771497	+	570	126451659	-	BURPS1106A_1810	-	sulfate permease family inorganic anion transporter
1795	 71.83	0	1771965..1773551	-	528	126452487	-	BURPS1106A_1811	-	hypothetical protein
1796	 68.01	0	1773787..1775274	-	495	126454875	-	BURPS1106A_1812	-	phosphoesterase family protein
1797	 66.07	0	1775335..1777521	+	728	126451578	-	BURPS1106A_1813	-	methyl-accepting chemotaxis protein
1798	 67.94	0	1778035..1780695	+	886	126452178	rnr	BURPS1106A_1816	-	ribonuclease R
1799	 70.30	0	1780827..1781570	+	247	126453075	-	BURPS1106A_1817	-	RNA methyltransferase
1800	 74.33	+1	1781582..1781881	+	99	126453961	-	BURPS1106A_1818	-	hypothetical protein
1801	 70.67	0	1781944..1782843	+	299	126455255	-	BURPS1106A_1819	-	N-acetylmuramoyl-L-alanine amidase
1802	 68.39	0	1783112..1783807	+	231	126454328	rpiA	BURPS1106A_1820	-	ribose-5-phosphate isomerase A
1803	 64.57	0	1784145..1784858	+	237	126455218	-	BURPS1106A_1821	-	GntR family transcriptional regulator
1804	 70.12	0	1784958..1785941	+	327	126451587	-	BURPS1106A_1822	-	oxidoreductase, NAD-binding
1805	 67.88	0	1786343..1787002	-	219	126452898	-	BURPS1106A_1823	-	His/Glu/Gln/Arg/opine amino acid ABC transporter permease
1806	 65.03	0	1787132..1787926	-	264	126455413	-	BURPS1106A_1824	-	amino acid ABC transporter, periplasmic amino acid-binding protein
1807	 70.17	0	1788046..1789074	-	342	126453525	pyrD	BURPS1106A_1825	-	dihydroorotate dehydrogenase 2
1808	 65.94	0	1789179..1790009	-	276	126452638	-	BURPS1106A_1826	-	arginyl-tRNA-protein transferase
1809	 69.66	0	1790043..1790810	-	255	126451822	aat	BURPS1106A_1827	-	leucyl/phenylalanyl-tRNA--protein transferase
1810	 65.75	0	1790819..1791364	-	181	126451825	-	BURPS1106A_1828	-	nudix hydrolase
1811	 69.03	0	1791413..1791751	+	112	126454583	-	BURPS1106A_1830	-	hypothetical protein
1812	 69.30	0	1792012..1792581	+	189	126453558	-	BURPS1106A_1831	-	hypothetical protein
1813	 66.37	0	1792586..1792924	+	112	126453393	qacE	BURPS1106A_1832	-	quaternary ammonium compound-resistance protein QacE
1814	 71.65	0	1792954..1794096	+	380	126454380	-	BURPS1106A_1833	-	enoyl-CoA hydratase
1815	 66.23	0	1794208..1794435	-	75	126452439	-	BURPS1106A_1834	-	hypothetical protein
1816	 68.23	0	1794553..1794999	-	148	126453846	-	BURPS1106A_1835	-	hypothetical protein
1817	 69.78	0	1795353..1796510	+	385	126454735	msuD	BURPS1106A_1836	-	alkanesulfonate monooxygenase
1818	 68.15	0	1796528..1797337	+	269	126451586	ssuC	BURPS1106A_1837	-	aliphatic sulfonates ABC transporter, permease protein
1819	 74.31	+1	1797334..1798341	+	335	126452550	ssuB	BURPS1106A_1838	-	aliphatic sulfonates ABC transporter, ATP-binding protein
1820	 63.43	0	1798338..1798646	+	102	126455149	-	BURPS1106A_1839	-	molybdenum-pterin binding protein
1821	 60.10	-1	1798775..1798972	+	65	126452295	-	BURPS1106A_1840	-	hypothetical protein
1822	 65.49	0	1799046..1799300	+	84	126455039	-	BURPS1106A_1841	-	hypothetical protein
1823	 65.69	0	1800276..1801295	-	339	126452196	dusA	BURPS1106A_1843	-	tRNA-dihydrouridine synthase A
1824	 73.46	+1	1801378..1801833	+	151	126452774	-	BURPS1106A_1844	-	hypothetical protein
1825	 65.44	0	1801873..1803180	-	435	126453978	-	BURPS1106A_1845	-	dicarboxylate/amino acid:cation (Na+ or H+) symporter (DAACS) family protein
1826	 71.96	0	1803405..1803971	+	188	126453027	-	BURPS1106A_1846	-	hypothetical protein
1827	 66.88	0	1804361..1804837	-	158	126454393	-	BURPS1106A_1847	-	putative transcriptional regulator
1828	 66.44	0	1805019..1805456	+	145	126455018	-	BURPS1106A_1848	-	thioesterase family protein
1829	 66.76	0	1805743..1806795	+	350	126452140	-	BURPS1106A_1849	-	aldo/keto reductase family oxidoreductase
1830	 71.47	0	1807151..1808212	+	353	126453257	-	BURPS1106A_1850	-	putative permease
1831	 66.67	0	1808377..1808526	+	49	126454325	-	BURPS1106A_1851	-	hypothetical protein
1832	 67.14	0	1808523..1808945	+	140	126454944	-	BURPS1106A_1852	-	hypothetical protein
1833	 78.03	+1	1808942..1809073	+	43	126454077	-	BURPS1106A_1854	-	hypothetical protein
1834	 65.95	0	1809051..1809887	-	278	126451561	-	BURPS1106A_1853	-	nodulation ABC transporter NodJ
1835	 66.01	0	1809892..1810806	-	304	126453723	nodI	BURPS1106A_1855	-	lipooligosaccharide transporter ATP-binding subunit
1836	 63.62	0	1811036..1811527	+	163	126452151	-	BURPS1106A_1856	-	universal stress family protein
1837	 68.57	0	1811938..1812672	-	244	126452784	-	BURPS1106A_1857	-	hypothetical protein
1838	 67.58	0	1812706..1813032	-	108	126454117	-	BURPS1106A_1858	-	hypothetical protein
1839	 68.83	0	1813095..1813742	-	215	126454981	lexA	BURPS1106A_1859	-	LexA repressor
1840	 49.43	-2	1813746..1813919	+	57	126452296	-	BURPS1106A_1860	-	hypothetical protein
1841	 66.96	0	1814045..1815082	+	345	126451687	-	BURPS1106A_1861	-	sulfate/thiosulfate ABC transporter, periplasmic sulfate-binding protein
1842	 69.24	0	1815215..1816108	+	297	126452543	cysT	BURPS1106A_1862	-	sulfate/thiosulfate ABC transporter, permease protein CysT
1843	 70.24	0	1816105..1817139	+	344	126453834	cysW	BURPS1106A_1863	-	sulfate/thiosulfate ABC transporter, permease protein CysW
1844	 72.44	0	1817153..1818208	+	351	126454799	cysA	BURPS1106A_1864	-	sulfate/thiosulfate ABC transporter, ATP-binding protein
1845	 65.70	0	1818278..1819204	+	308	126452001	-	BURPS1106A_1865	-	transcriptional regulator CysB-like protein
1846	 65.52	0	1819395..1820525	+	376	126453843	-	BURPS1106A_1866	-	putative ribose ABC transporter, periplasmic ribose-binding protein
1847	 67.52	0	1820583..1820699	-	38	126452724	-	BURPS1106A_1867	-	hypothetical protein
1848	 73.79	+1	1820665..1822236	+	523	126455157	-	BURPS1106A_1868	-	putative ribose ABC transporter, ATP-binding protein
1849	 69.92	0	1822307..1823320	+	337	126454007	-	BURPS1106A_1869	-	putative ribose ABC transporter, permease protein
1850	 70.16	0	1823350..1824381	+	343	126454096	rbsR	BURPS1106A_1870	-	ribose operon repressor RbsR
1851	 77.64	+1	1824378..1825352	+	324	126453421	rbsK	BURPS1106A_1871	-	ribokinase
1852	 71.35	0	1825565..1827445	+	626	126451531	-	BURPS1106A_1872	-	methyl-accepting chemotaxis protein
1853	 61.05	-1	1828296..1830218	+	640	126454647	prkA	BURPS1106A_1873	-	serine protein kinase
1854	 63.51	0	1830342..1831607	+	421	126452511	-	BURPS1106A_1874	-	hypothetical protein
1855	 63.46	0	1831607..1833289	+	560	126451642	-	BURPS1106A_1875	-	hypothetical protein
1856	 75.26	+1	1833256..1833546	+	96	126451842	-	BURPS1106A_1876	-	hypothetical protein
1857	 66.97	0	1833716..1835020	+	434	126451917	-	BURPS1106A_1877	-	alpha-ketoglutarate permease
1858	 69.53	0	1835273..1836319	+	348	126452998	-	BURPS1106A_1878	-	ABC transporter substrate binding protein
1859	 66.03	0	1836371..1836685	+	104	126452114	-	BURPS1106A_1879	-	hypothetical protein
1860	 71.12	0	1836780..1837610	+	276	126455247	-	BURPS1106A_1880	-	ABC transporter, ATP-binding protein
1861	 72.74	0	1837607..1838578	+	323	126454363	-	BURPS1106A_1881	-	ABC transporter, permease protein
1862	 61.98	-1	1839135..1839326	+	63	126454658	-	BURPS1106A_1882	-	Flp/Fap pilin
1863	 76.88	+1	1839352..1839870	+	172	126455283	-	BURPS1106A_1883	-	peptidase A24A, prepilin type IV
1864	 76.92	+1	1839883..1840935	+	350	126452162	-	BURPS1106A_1884	-	putative pilus assembly protein CpaB
1865	 70.95	0	1840970..1842418	+	482	126453026	-	BURPS1106A_1885	-	type II/III secretion system protein
1866	 77.05	+1	1842452..1842865	+	137	126452011	-	BURPS1106A_1886	-	putative lipoprotein
1867	 74.35	+1	1842876..1844111	+	411	126453450	-	BURPS1106A_1887	-	putative CpaE protein
1868	 71.18	0	1844111..1845682	+	523	126452852	-	BURPS1106A_1888	-	type IV pilus assembly protein
1869	 73.29	+1	1845679..1846674	+	331	126452248	-	BURPS1106A_1889	-	type II secretion system protein
1870	 72.38	0	1846671..1847615	+	314	126454623	-	BURPS1106A_1890	-	type II secretion system protein
1871	 75.15	+1	1847759..1848760	+	333	126454065	-	BURPS1106A_1891	-	TPR repeat-containing protein
1872	 67.83	0	1848757..1849185	+	142	126452631	-	BURPS1106A_1892	-	TadE family protein
1873	 73.35	+1	1849178..1850209	+	343	126453566	-	BURPS1106A_1894	-	TadE family protein
1874	 76.39	+1	1850173..1850316	-	47	126454855	-	BURPS1106A_1893	-	hypothetical protein
1875	 65.20	0	1850489..1851304	+	271	126454167	-	BURPS1106A_1895	-	putative amino acid ABC transporter, periplasmic amino acid-binding protein
1876	 75.00	+1	1851349..1851468	+	39	126455214	-	BURPS1106A_1896	-	hypothetical protein
1877	 71.73	0	1851465..1851701	+	78	126453791	-	BURPS1106A_1897	-	hypothetical protein
1878	 71.07	0	1851703..1852428	+	241	126452880	-	BURPS1106A_1898	-	His/Glu/Gln/Arg/opine amino acid ABC transporter permease
1879	 71.10	0	1852431..1853174	+	247	126451643	-	BURPS1106A_1899	-	His/Glu/Gln/Arg/opine amino acid ABC transporter permease
1880	 74.36	+1	1853216..1854631	-	471	126451678	-	BURPS1106A_1900	-	M24/M37 family peptidase
1881	 56.30	-2	1854773..1854907	+	44	126454315	-	BURPS1106A_1901	-	hypothetical protein
1882	 70.39	0	1854973..1855644	-	223	126453336	amrR	BURPS1106A_1902	-	multidrug efflux operon transciptional regulator AmrR
1883	 73.83	+1	1855788..1856987	+	399	126451999	amrA	BURPS1106A_1903	-	periplasmic multidrug efflux lipoprotein precursor
1884	 68.87	0	1857004..1860135	+	1043	126454286	amrB	BURPS1106A_1904	-	multidrug efflux protein
1885	 74.40	+1	1860132..1861682	+	516	126455205	oprA	BURPS1106A_1905	-	outer membrane efflux protein OprA
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.