IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1718	 66.10	0	1691268..1691621	+	117	126455137	-	BURPS1106A_1732	-	putative endoribonuclease L-PSP
1719	 68.68	0	1691666..1693903	+	745	126454760	relA	BURPS1106A_1733	-	GTP diphosphokinase
1720	 62.11	-1	1694362..1696269	+	635	126453502	thrS	BURPS1106A_1735	-	threonyl-tRNA synthetase
1721	 58.17	-1	1696373..1696843	+	156	126452447	infC	BURPS1106A_1736	-	translation initiation factor IF-3
1722	 59.60	-1	1697036..1697233	+	65	126451610	rpmI	BURPS1106A_1737	-	50S ribosomal protein L35
1723	 60.56	-1	1697264..1697623	+	119	126455404	rplT	BURPS1106A_1738	-	50S ribosomal protein L20
1724	 63.73	0	1697763..1698785	+	340	161986643	pheS	BURPS1106A_1739	-	phenylalanyl-tRNA synthetase subunit alpha
1725	 66.71	0	1698873..1701305	+	810	126453391	pheT	BURPS1106A_1740	-	phenylalanyl-tRNA synthetase subunit beta
1726	 64.69	0	1701378..1701782	+	134	126454482	ihfA	BURPS1106A_1741	-	integration host factor subunit alpha
1727	 66.91	0	1701841..1702245	+	134	126453766	-	BURPS1106A_1742	-	MerR family transcriptional regulator
1728	 66.20	0	1702367..1704520	-	717	126455049	-	BURPS1106A_1743	-	putative lipoprotein
1729	 56.71	-2	1704987..1706171	-	394	126454741	-	BURPS1106A_1744	-	acyltransferase
1730	 66.25	0	1706883..1708079	-	398	126453205	-	BURPS1106A_1746	-	putative lipoprotein
1731	 70.73	0	1708090..1708581	-	163	126452398	-	BURPS1106A_1747	-	hypothetical protein
1732	 65.91	0	1708622..1708753	-	43	126451601	-	BURPS1106A_1748	-	hypothetical protein
1733	 64.47	0	1708910..1710136	+	408	126455259	-	BURPS1106A_1749	-	putative lipoprotein
1734	 63.23	0	1710698..1710988	+	96	126453815	-	BURPS1106A_1750	-	antibiotic biosynthesis monooxygenase family protein
1735	 59.69	-1	1711038..1711295	-	85	126452918	-	BURPS1106A_1751	-	hypothetical protein
1736	 60.57	-1	1711444..1711722	-	92	126453298	-	BURPS1106A_1752	-	hypothetical protein
1737	 65.70	0	1711961..1712683	-	240	126452373	-	BURPS1106A_1753	-	hypothetical protein
1738	 60.06	-1	1712884..1713201	+	105	126454882	-	BURPS1106A_1754	-	hypothetical protein
1739	 68.60	0	1713360..1713617	-	85	126453697	-	BURPS1106A_1755	-	hypothetical protein
1740	 68.92	0	1713823..1714221	-	132	126454104	-	BURPS1106A_1756	-	hypothetical protein
1741	 70.54	0	1714643..1715545	+	300	126451925	-	BURPS1106A_1757	-	LysR family transcriptional regulator
1742	 70.68	0	1715964..1717334	+	456	126452356	scpB	BURPS1106A_1758	-	segregation and condensation protein B
1743	 73.45	+1	1717398..1719062	+	554	126455204	-	BURPS1106A_1759	-	RNA pseudouridine synthase family protein
1744	 60.82	-1	1719367..1719828	+	153	126452322	-	BURPS1106A_1760	-	hypothetical protein
1745	 64.91	0	1719825..1721300	+	491	126455004	nusA	BURPS1106A_1761	-	transcription elongation factor NusA
1746	 68.07	0	1721392..1724319	+	975	126455003	infB	BURPS1106A_1762	-	translation initiation factor IF-2
1747	 60.19	-1	1724377..1724793	+	138	126454142	rbfA	BURPS1106A_1763	-	ribosome-binding factor A
1748	 71.18	0	1724847..1725755	+	302	126454073	truB	BURPS1106A_1764	-	tRNA pseudouridine synthase B
1749	 61.67	-1	1725839..1725958	+	39	126453414	-	BURPS1106A_1765	-	hypothetical protein
1750	 67.18	0	1726025..1727584	-	519	126451616	-	BURPS1106A_1766	-	EmrB/QacA family drug resistance transporter
1751	 68.04	0	1727607..1728842	-	411	126454488	-	BURPS1106A_1767	-	multidrug resistance protein
1752	 70.24	0	1728910..1730391	-	493	126452748	-	BURPS1106A_1768	-	NodT family efflux transporter outer membrane lipoprotein
1753	 66.27	0	1730506..1731003	-	165	126451868	-	BURPS1106A_1769	-	MarR family transcriptional regulator
1754	 58.33	-1	1731203..1731334	-	43	126454404	-	BURPS1106A_1770	-	hypothetical protein
1755	 66.94	0	1731296..1733122	+	608	126453085	typA	BURPS1106A_1771	-	GTP-binding protein TypA
1756	 64.29	0	1733461..1736325	+	954	126453274	kgd	BURPS1106A_1772	-	alpha-ketoglutarate decarboxylase
1757	 68.09	0	1736460..1737725	+	421	126452386	sucB	BURPS1106A_1773	-	dihydrolipoamide acetyltransferase
1758	 65.62	0	1737825..1739255	+	476	126455059	lpdA	BURPS1106A_1774	-	dihydrolipoamide dehydrogenase
1759	 65.21	0	1739359..1740459	+	366	126454108	-	BURPS1106A_1775	-	AFG1 family ATPase
1760	 55.71	-2	1740464..1740682	+	72	126455170	-	BURPS1106A_1776	-	hypothetical protein
1761	 68.61	0	1740654..1741064	+	136	126453987	-	BURPS1106A_1777	-	hypothetical protein
1762	 65.89	0	1741096..1741224	+	42	126453372	-	BURPS1106A_1778	-	hypothetical protein
1763	 63.64	0	1741301..1741762	-	153	126454690	-	BURPS1106A_1779	-	putative lipoprotein
1764	 66.67	0	1741785..1742009	+	74	126453512	-	BURPS1106A_1781	-	hypothetical protein
1765	 66.61	0	1742003..1743658	-	551	126454681	-	BURPS1106A_1780	-	hypothetical protein
1766	 74.33	+1	1743833..1745098	-	421	126453362	-	BURPS1106A_1782	-	putative lipoprotein
1767	 74.59	+1	1745148..1746749	-	533	126453964	-	BURPS1106A_1783	-	hypothetical protein
1768	 59.22	-1	1746682..1746963	+	93	126452281	-	BURPS1106A_1784	-	hypothetical protein
1769	 59.60	-1	1747387..1747584	+	65	126452952	-	BURPS1106A_1785	-	pilin family protein
1770	 66.27	0	1747667..1748167	+	166	126454569	-	BURPS1106A_1786	-	peptidase A24A, prepilin type IV
1771	 67.09	0	1748164..1748631	+	155	126455238	-	BURPS1106A_1787	-	TadE family protein
1772	 74.44	+1	1748711..1749610	+	299	126451660	-	BURPS1106A_1788	-	putative pilus assembly protein CpaB
1773	 70.52	0	1749701..1750999	+	432	126452556	-	BURPS1106A_1789	-	type II/III secretion system protein
1774	 72.48	0	1751066..1752304	+	412	126453930	-	BURPS1106A_1790	-	hypothetical protein
1775	 67.63	0	1752308..1753651	+	447	126455026	-	BURPS1106A_1791	-	type II/IV secretion system protein
1776	 72.92	0	1753644..1754651	+	335	126453046	-	BURPS1106A_1792	-	type II secretion system protein
1777	 73.19	+1	1754657..1755667	+	336	126452133	-	BURPS1106A_1793	-	type II secretion system protein
1778	 74.04	+1	1755704..1756639	+	311	126453745	-	BURPS1106A_1794	-	TPR domain-containing protein
1779	 75.59	+1	1756661..1757041	+	126	126453038	-	BURPS1106A_1795	-	hypothetical protein
1780	 71.09	0	1757049..1758857	+	602	126451635	-	BURPS1106A_1796	-	hypothetical protein
1781	 66.81	0	1758874..1760265	+	463	126454635	-	BURPS1106A_1797	-	sigma-54 interaction domain/Fis family transcriptional regulator domain-containing protein
1782	 68.63	0	1760356..1761069	+	237	126454683	-	BURPS1106A_1798	-	hypothetical protein
1783	 70.97	0	1761220..1761870	-	216	126453854	-	BURPS1106A_1799	-	putative RNA chaperone Hfq
1784	 67.73	0	1762166..1762447	+	93	126454387	-	BURPS1106A_1800	-	hypothetical protein
1785	 69.35	0	1762462..1762647	+	61	126452476	-	BURPS1106A_1802	-	hypothetical protein
1786	 66.37	0	1762635..1763633	-	332	126451524	-	BURPS1106A_1801	-	hypothetical protein
1787	 65.99	0	1763654..1765426	-	590	126454267	fadD	BURPS1106A_1803	-	long-chain-fatty-acid--CoA ligase
1788	 70.18	0	1765423..1765536	-	37	126455258	-	BURPS1106A_1804	-	hypothetical protein
1789	 70.56	0	1765611..1766561	-	316	126452031	-	BURPS1106A_1805	-	TetR family transcriptional regulator
1790	 66.83	0	1766778..1768004	-	408	126453926	-	BURPS1106A_1806	-	major facilitator superfamily transporter sialate:H(+) symporter
1791	 73.02	+1	1768207..1768395	-	62	126454782	-	BURPS1106A_1807	-	hypothetical protein
1792	 70.09	0	1768414..1768968	+	184	126451652	-	BURPS1106A_1808	-	acetyltransferase
1793	 65.87	0	1769112..1769738	+	208	126452499	-	BURPS1106A_1809	-	hypothetical protein
1794	 70.99	0	1769785..1771497	+	570	126451659	-	BURPS1106A_1810	-	sulfate permease family inorganic anion transporter
1795	 71.83	0	1771965..1773551	-	528	126452487	-	BURPS1106A_1811	-	hypothetical protein
1796	 68.01	0	1773787..1775274	-	495	126454875	-	BURPS1106A_1812	-	phosphoesterase family protein
1797	 66.07	0	1775335..1777521	+	728	126451578	-	BURPS1106A_1813	-	methyl-accepting chemotaxis protein
1798	 67.94	0	1778035..1780695	+	886	126452178	rnr	BURPS1106A_1816	-	ribonuclease R
1799	 70.30	0	1780827..1781570	+	247	126453075	-	BURPS1106A_1817	-	RNA methyltransferase
1800	 74.33	+1	1781582..1781881	+	99	126453961	-	BURPS1106A_1818	-	hypothetical protein
1801	 70.67	0	1781944..1782843	+	299	126455255	-	BURPS1106A_1819	-	N-acetylmuramoyl-L-alanine amidase
1802	 68.39	0	1783112..1783807	+	231	126454328	rpiA	BURPS1106A_1820	-	ribose-5-phosphate isomerase A
1803	 64.57	0	1784145..1784858	+	237	126455218	-	BURPS1106A_1821	-	GntR family transcriptional regulator
1804	 70.12	0	1784958..1785941	+	327	126451587	-	BURPS1106A_1822	-	oxidoreductase, NAD-binding
1805	 67.88	0	1786343..1787002	-	219	126452898	-	BURPS1106A_1823	-	His/Glu/Gln/Arg/opine amino acid ABC transporter permease
1806	 65.03	0	1787132..1787926	-	264	126455413	-	BURPS1106A_1824	-	amino acid ABC transporter, periplasmic amino acid-binding protein
1807	 70.17	0	1788046..1789074	-	342	126453525	pyrD	BURPS1106A_1825	-	dihydroorotate dehydrogenase 2
1808	 65.94	0	1789179..1790009	-	276	126452638	-	BURPS1106A_1826	-	arginyl-tRNA-protein transferase
1809	 69.66	0	1790043..1790810	-	255	126451822	aat	BURPS1106A_1827	-	leucyl/phenylalanyl-tRNA--protein transferase
1810	 65.75	0	1790819..1791364	-	181	126451825	-	BURPS1106A_1828	-	nudix hydrolase
1811	 69.03	0	1791413..1791751	+	112	126454583	-	BURPS1106A_1830	-	hypothetical protein
1812	 69.30	0	1792012..1792581	+	189	126453558	-	BURPS1106A_1831	-	hypothetical protein
1813	 66.37	0	1792586..1792924	+	112	126453393	qacE	BURPS1106A_1832	-	quaternary ammonium compound-resistance protein QacE
1814	 71.65	0	1792954..1794096	+	380	126454380	-	BURPS1106A_1833	-	enoyl-CoA hydratase
1815	 66.23	0	1794208..1794435	-	75	126452439	-	BURPS1106A_1834	-	hypothetical protein
1816	 68.23	0	1794553..1794999	-	148	126453846	-	BURPS1106A_1835	-	hypothetical protein
1817	 69.78	0	1795353..1796510	+	385	126454735	msuD	BURPS1106A_1836	-	alkanesulfonate monooxygenase
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.