IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1625	 71.37	0	1589717..1591798	+	693	126452082	-	BURPS1106A_1639	-	response regulator/sensor histidine kinase
1626	 69.19	0	1591799..1592431	+	210	126454700	rcsB	BURPS1106A_1640	-	capsular synthesis regulator component B
1627	 74.68	+1	1592735..1594444	-	569	126451768	-	BURPS1106A_1641	-	NodT family efflux transporter outer membrane lipoprotein
1628	 66.54	0	1594446..1596065	-	539	126452845	-	BURPS1106A_1642	-	drug:H+ antiporter-2 (DHA2) family protein
1629	 70.90	0	1596062..1596250	-	62	126452822	-	BURPS1106A_1643	-	hypothetical protein
1630	 71.04	0	1596247..1597434	-	395	126454055	-	BURPS1106A_1644	-	HlyD family secretion protein
1631	 71.11	0	1597555..1597689	+	44	126452212	-	BURPS1106A_1646	-	hypothetical protein
1632	 75.08	+1	1597674..1597994	-	106	126455101	-	BURPS1106A_1645	-	hypothetical protein
1633	 69.01	0	1598058..1599251	-	397	126453995	-	BURPS1106A_1647	-	trans-2-enoyl-CoA reductase
1634	 67.80	0	1599449..1601032	-	527	126455094	acpA	BURPS1106A_1648	-	acid phosphatase
1635	 71.54	0	1601266..1602681	+	471	126452479	-	BURPS1106A_1649	-	di-haem cytochrome c peroxidase
1636	 65.85	0	1602725..1603585	-	286	126453974	-	BURPS1106A_1650	-	hypothetical protein
1637	 70.05	0	1603687..1605786	+	699	126452022	-	BURPS1106A_1651	-	glycosy hydrolase family protein
1638	 66.93	0	1606074..1606460	+	128	126451755	-	BURPS1106A_1652	-	hypothetical protein
1639	 72.46	0	1606479..1606961	+	160	126452868	-	BURPS1106A_1653	-	NUDIX family hydrolase
1640	 74.07	+1	1607078..1607212	+	44	126453546	-	BURPS1106A_1654	-	hypothetical protein
1641	 64.91	0	1607305..1609014	-	569	126451537	glnS	BURPS1106A_1655	-	glutaminyl-tRNA synthetase
1642	 72.50	0	1609264..1609503	+	79	126452646	-	BURPS1106A_1656	-	hypothetical protein
1643	 70.83	0	1609635..1609802	-	55	126454246	-	BURPS1106A_1657	-	hypothetical protein
1644	 71.17	0	1609832..1611052	-	406	126455081	-	BURPS1106A_1658	-	CAIB/BAIF family protein
1645	 75.00	+1	1611154..1611285	-	43	126451668	-	BURPS1106A_1659	-	hypothetical protein
1646	 68.34	0	1611604..1614228	+	874	126451905	alaS	BURPS1106A_1660	-	alanyl-tRNA synthetase
1647	 72.51	0	1614760..1615785	-	341	126454011	-	BURPS1106A_1661	-	LysR family transcriptional regulator
1648	 73.07	+1	1615872..1617512	+	546	126455159	-	BURPS1106A_1662	-	major facilitator superfamily permease
1649	 72.06	0	1617844..1619400	+	518	126455207	-	BURPS1106A_1664	-	peptidase s1, chymotrypsin:pdz/dhr/glgf
1650	 77.40	+1	1619355..1619531	-	58	126454044	-	BURPS1106A_1663	-	hypothetical protein
1651	 63.86	0	1619619..1620296	-	225	126451611	-	BURPS1106A_1665	-	hypothetical protein
1652	 69.75	0	1620588..1621139	+	183	126453396	-	BURPS1106A_1666	-	MutT/NUDIX NTP pyrophosphatase
1653	 68.45	0	1621239..1621574	-	111	126453939	-	BURPS1106A_1667	-	hypothetical protein
1654	 71.80	0	1621791..1622939	+	382	126454540	-	BURPS1106A_1668	-	NAD-dependent 4-hydroxybutyrate dehydrogenase
1655	 72.75	0	1622936..1623280	+	114	126453157	-	BURPS1106A_1669	-	hypothetical protein
1656	 70.67	0	1623181..1623630	+	149	126452120	-	BURPS1106A_1670	-	thioesterase family protein
1657	 72.76	0	1623635..1624570	+	311	126452113	-	BURPS1106A_1671	-	branched chain amino acid ABC transporter permease
1658	 74.21	+1	1624599..1626839	+	746	126454727	-	BURPS1106A_1672	-	ABC-transporter
1659	 74.89	+1	1626836..1627540	+	234	126453532	-	BURPS1106A_1673	-	ABC transporter, ATP-binding protein
1660	 70.15	0	1627657..1628460	-	267	126452492	iolB	BURPS1106A_1674	-	myo-inositol catabolism protein IolB
1661	 70.36	0	1628460..1629380	-	306	126454709	-	BURPS1106A_1675	-	AP endonuclease
1662	 73.52	+1	1629377..1631317	-	646	126453463	iolD	BURPS1106A_1676	-	iolD protein
1663	 71.96	0	1631373..1633373	-	666	126452179	iolC	BURPS1106A_1677	-	iolC protein
1664	 65.29	0	1633387..1634187	-	266	126451775	-	BURPS1106A_1678	-	carbohydrate ABC transporter ATP-binding protein
1665	 68.24	0	1634200..1635345	-	381	126455364	-	BURPS1106A_1679	-	carbohydrate ABC transporter permease
1666	 65.41	0	1635446..1636558	-	370	126453990	-	BURPS1106A_1680	-	carbohydrate ABC transporter periplasmic sugar-binding protein
1667	 67.23	0	1636740..1637621	+	293	126451672	-	BURPS1106A_1681	-	RpiR family transcriptional regulator
1668	 71.67	0	1637614..1638633	+	339	126452718	-	BURPS1106A_1682	-	putative inositol 2-dehydrogenase
1669	 72.83	0	1638646..1639683	+	345	126454442	-	BURPS1106A_1683	-	oxidoreductase family protein
1670	 62.77	0	1639848..1640078	+	76	126454544	-	BURPS1106A_1684	-	hypothetical protein
1671	 70.54	0	1640354..1640740	+	128	126452323	-	BURPS1106A_1685	-	hypothetical protein
1672	 63.65	0	1641044..1641772	+	242	126453297	-	BURPS1106A_1686	-	DNA-binding response regulator
1673	 70.62	0	1641769..1643133	+	454	126452942	-	BURPS1106A_1687	-	lysM domain-containing protein
1674	 69.26	0	1643144..1645537	+	797	126453533	-	BURPS1106A_1688	-	sensor histidine kinase
1675	 73.14	+1	1645626..1646243	+	205	126453979	-	BURPS1106A_1689	-	putative lipoprotein
1676	 63.83	0	1646304..1647185	-	293	126451502	galU	BURPS1106A_1690	-	UTP-glucose-1-phosphate uridylyltransferase
1677	 66.25	0	1647272..1650139	-	955	126452676	valS	BURPS1106A_1691	-	valyl-tRNA synthetase
1678	 69.12	0	1650279..1652642	+	787	126453724	uvrD	BURPS1106A_1692	-	DNA helicase II
1679	 71.74	0	1652639..1653427	+	262	126454861	mtnN	BURPS1106A_1693	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
1680	 67.30	0	1653764..1655017	-	417	126455407	fsr	BURPS1106A_1694	-	fosmidomycin resistance protein
1681	 69.65	0	1655102..1657045	+	647	126453706	-	BURPS1106A_1696	-	methyl-accepting chemotaxis protein
1682	 73.54	+1	1657018..1657308	-	96	126452593	-	BURPS1106A_1695	-	hypothetical protein
1683	 68.03	0	1657396..1658277	-	293	126454942	-	BURPS1106A_1697	-	putative fusaric acid resistance protein
1684	 64.22	0	1658291..1658494	-	67	126454915	-	BURPS1106A_1698	-	hypothetical protein
1685	 71.03	0	1658491..1660692	-	733	126452079	-	BURPS1106A_1699	-	putative fusaric acid resistance protein
1686	 73.61	+1	1660709..1662466	-	585	126454776	-	BURPS1106A_1700	-	putative fusaric acid efflux protein
1687	 68.68	0	1662639..1663580	+	313	126453910	-	BURPS1106A_1701	-	LysR family transcriptional regulator
1688	 71.26	0	1663719..1663892	+	57	126452819	-	BURPS1106A_1702	-	hypothetical protein
1689	 69.86	0	1663929..1664900	-	323	126451818	-	BURPS1106A_1703	-	Ser/Thr protein phosphatase family protein
1690	 69.62	0	1664932..1666353	-	473	126452159	-	BURPS1106A_1704	-	oxidoreductase, FAD-binding
1691	 74.00	+1	1666388..1666837	-	149	126455080	-	BURPS1106A_1705	-	hypothetical protein
1692	 72.25	0	1666834..1667442	-	202	126454412	-	BURPS1106A_1706	-	NADPH-dependent FMN reductase
1693	 68.34	0	1667548..1668861	+	437	126453311	rbn	BURPS1106A_1707	-	tRNA-processing ribonuclease BN
1694	 68.38	0	1668858..1669148	+	96	126454590	-	BURPS1106A_1709	-	hypothetical protein
1695	 62.62	0	1669114..1669434	-	106	126451727	-	BURPS1106A_1708	-	membrane protein
1696	 62.15	-1	1669651..1670115	+	154	126454211	-	BURPS1106A_1710	-	CBS domain-containing protein
1697	 68.17	0	1670215..1672149	+	644	126455385	-	BURPS1106A_1711	-	major facilitator superfamily permease
1698	 79.01	+2	1672233..1672475	+	80	126452040	-	BURPS1106A_1712	-	hypothetical protein
1699	 70.72	0	1672514..1673623	+	369	126453136	aroC	BURPS1106A_1713	-	chorismate synthase
1700	 57.59	-1	1673775..1674611	-	278	126452763	-	BURPS1106A_1714	-	transposase
1701	 64.72	0	1675272..1677017	-	581	126453991	-	BURPS1106A_1715	-	electron transfer flavoprotein-ubiquinone oxidoreductase
1702	 66.54	0	1677126..1677905	+	259	126454477	-	BURPS1106A_1716	-	short chain dehydrogenase
1703	 65.97	0	1677950..1678381	+	143	126451702	-	BURPS1106A_1717	-	thioesterase family protein
1704	 67.32	0	1678759..1679832	-	357	126451507	-	BURPS1106A_1718	-	hypothetical protein
1705	 63.25	0	1680091..1680207	-	38	126452570	-	BURPS1106A_1719	-	hypothetical protein
1706	 62.75	0	1680341..1680493	-	50	126454450	-	BURPS1106A_1720	-	hypothetical protein
1707	 64.51	0	1680761..1682293	-	510	126451835	-	BURPS1106A_1721	-	putative lipoprotein
1708	 63.57	0	1682324..1682614	+	96	126452883	-	BURPS1106A_1722	-	hypothetical protein
1709	 68.13	0	1682885..1683430	-	181	126454121	-	BURPS1106A_1723	-	sensory box transcriptional regulator
1710	 58.33	-1	1683481..1683612	+	43	126454956	-	BURPS1106A_1724	-	3-oxoadipate CoA-succinyl transferase alpha subunit
1711	 64.68	0	1683683..1684387	+	234	126452331	-	BURPS1106A_1725	-	3-oxoacid CoA-transferase subunit A
1712	 65.89	0	1684389..1685030	+	213	126453251	-	BURPS1106A_1726	-	3-oxoacid CoA-transferase subunit B
1713	 75.10	+1	1685431..1686153	-	240	126454594	-	BURPS1106A_1727	-	short chain dehydrogenase
1714	 71.57	0	1686197..1687297	-	366	126451454	-	BURPS1106A_1728	-	polysaccharide deacetylase family protein
1715	 73.30	+1	1687312..1687869	-	185	126452915	-	BURPS1106A_1729	-	hypothetical protein
1716	 72.30	0	1688057..1688962	+	301	126453195	-	BURPS1106A_1730	-	LysR family transcriptional regulator
1717	 69.12	0	1689848..1691194	+	448	126452037	-	BURPS1106A_1731	-	alpha/beta fold family hydrolase
1718	 66.10	0	1691268..1691621	+	117	126455137	-	BURPS1106A_1732	-	putative endoribonuclease L-PSP
1719	 68.68	0	1691666..1693903	+	745	126454760	relA	BURPS1106A_1733	-	GTP diphosphokinase
1720	 62.11	-1	1694362..1696269	+	635	126453502	thrS	BURPS1106A_1735	-	threonyl-tRNA synthetase
1721	 58.17	-1	1696373..1696843	+	156	126452447	infC	BURPS1106A_1736	-	translation initiation factor IF-3
1722	 59.60	-1	1697036..1697233	+	65	126451610	rpmI	BURPS1106A_1737	-	50S ribosomal protein L35
1723	 60.56	-1	1697264..1697623	+	119	126455404	rplT	BURPS1106A_1738	-	50S ribosomal protein L20
1724	 63.73	0	1697763..1698785	+	340	161986643	pheS	BURPS1106A_1739	-	phenylalanyl-tRNA synthetase subunit alpha
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.