IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1588	 74.22	+1	1553326..1554741	-	471	126453922	-	BURPS1106A_1602	-	hypothetical protein
1589	 69.29	0	1554765..1555031	-	88	126453070	-	BURPS1106A_1603	-	PAAR motif-containing protein
1590	 54.04	-2	1555236..1555433	-	65	126451965	-	BURPS1106A_1604	-	hypothetical protein
1591	 53.85	-2	1555419..1555535	+	38	126455389	-	BURPS1106A_1605	-	hypothetical protein
1592	 72.36	0	1555551..1558358	+	935	126454317	-	BURPS1106A_1606	-	Rhs element Vgr protein
1593	 70.86	0	1558361..1559194	+	277	126453476	-	BURPS1106A_1607	-	hypothetical protein
1594	 60.78	-1	1559379..1559888	+	169	126452772	-	BURPS1106A_1608	-	hypothetical protein
1595	 57.79	-1	1560574..1562883	+	769	126451896	-	BURPS1106A_1609	-	hypothetical protein
1596	 67.00	0	1562992..1566327	+	1111	126451485	-	BURPS1106A_1610	-	Rhs element Vgr protein
1597	 61.71	-1	1567209..1567652	+	147	126455371	-	BURPS1106A_1611	-	hypothetical protein
1598	 67.54	0	1567791..1567904	+	37	126454250	-	BURPS1106A_1612	-	hypothetical protein
1599	 68.72	0	1567885..1568127	+	80	126453142	-	BURPS1106A_1613	-	hypothetical protein
1600	 66.34	0	1568145..1568450	+	101	126452024	-	BURPS1106A_1614	-	hypothetical protein
1601	 71.14	0	1568463..1571303	+	946	126453710	-	BURPS1106A_1615	-	Rhs element Vgr protein
1602	 59.25	-1	1571305..1572180	+	291	126452576	-	BURPS1106A_1616	-	hypothetical protein
1603	 52.78	-2	1572177..1575020	+	947	126451662	-	BURPS1106A_1617	-	hypothetical protein
1604	 54.87	-2	1575279..1576058	+	259	126455266	-	BURPS1106A_1618	-	hypothetical protein
1605	 48.15	-2	1576401..1576589	-	62	126454293	-	BURPS1106A_1619	-	hypothetical protein
1606	 63.89	0	1576982..1577161	-	59	126453881	-	BURPS1106A_1620	-	hypothetical protein
1607	 66.67	0	1577163..1577321	-	52	126452441	-	BURPS1106A_1621	-	hypothetical protein
1608	 68.52	0	1577530..1577799	+	89	126454935	-	BURPS1106A_1622	-	hypothetical protein
1609	 65.25	0	1578063..1578344	-	93	126453711	-	BURPS1106A_1623	-	H-NS histone family protein
1610	 68.90	0	1578812..1579795	-	327	126453165	-	BURPS1106A_1624	-	amidohydrolase family protein
1611	 67.04	0	1579840..1581177	-	445	126451973	-	BURPS1106A_1625	-	major facilitator family transporter
1612	 58.14	-1	1581412..1581540	+	42	126454306	-	BURPS1106A_1626	-	hypothetical protein
1613	 67.45	0	1581543..1582436	+	297	126453156	-	BURPS1106A_1627	-	LysR family transcriptional regulator
1614	 66.67	0	1582476..1582610	+	44	126455424	-	BURPS1106A_1629	-	hypothetical protein
1615	 52.63	-2	1582574..1582744	-	56	126452497	-	BURPS1106A_1628	-	hypothetical protein
1616	 51.80	-2	1582774..1582995	+	73	126454179	-	BURPS1106A_1630	-	hypothetical protein
1617	 67.20	0	1583081..1583266	+	61	126455358	-	BURPS1106A_1631	-	hypothetical protein
1618	 68.68	0	1583253..1583798	+	181	126452912	-	BURPS1106A_1632	-	type I pilus protein
1619	 69.16	0	1583851..1584411	+	186	126453021	-	BURPS1106A_1633	-	type I pilus protein
1620	 73.37	+1	1584506..1585012	+	168	126454672	-	BURPS1106A_1634	-	type I pilus protein
1621	 72.14	0	1585030..1585869	+	279	126451789	-	BURPS1106A_1635	-	fimbrial chaperone protein
1622	 71.14	0	1585914..1588325	+	803	126453255	-	BURPS1106A_1636	-	fimbrial usher protein
1623	 68.63	0	1588341..1589306	+	321	126454966	-	BURPS1106A_1638	-	putative type 1 pili protein CsuE
1624	 59.88	-1	1589303..1589626	-	107	126454379	-	BURPS1106A_1637	-	hypothetical protein
1625	 71.37	0	1589717..1591798	+	693	126452082	-	BURPS1106A_1639	-	response regulator/sensor histidine kinase
1626	 69.19	0	1591799..1592431	+	210	126454700	rcsB	BURPS1106A_1640	-	capsular synthesis regulator component B
1627	 74.68	+1	1592735..1594444	-	569	126451768	-	BURPS1106A_1641	-	NodT family efflux transporter outer membrane lipoprotein
1628	 66.54	0	1594446..1596065	-	539	126452845	-	BURPS1106A_1642	-	drug:H+ antiporter-2 (DHA2) family protein
1629	 70.90	0	1596062..1596250	-	62	126452822	-	BURPS1106A_1643	-	hypothetical protein
1630	 71.04	0	1596247..1597434	-	395	126454055	-	BURPS1106A_1644	-	HlyD family secretion protein
1631	 71.11	0	1597555..1597689	+	44	126452212	-	BURPS1106A_1646	-	hypothetical protein
1632	 75.08	+1	1597674..1597994	-	106	126455101	-	BURPS1106A_1645	-	hypothetical protein
1633	 69.01	0	1598058..1599251	-	397	126453995	-	BURPS1106A_1647	-	trans-2-enoyl-CoA reductase
1634	 67.80	0	1599449..1601032	-	527	126455094	acpA	BURPS1106A_1648	-	acid phosphatase
1635	 71.54	0	1601266..1602681	+	471	126452479	-	BURPS1106A_1649	-	di-haem cytochrome c peroxidase
1636	 65.85	0	1602725..1603585	-	286	126453974	-	BURPS1106A_1650	-	hypothetical protein
1637	 70.05	0	1603687..1605786	+	699	126452022	-	BURPS1106A_1651	-	glycosy hydrolase family protein
1638	 66.93	0	1606074..1606460	+	128	126451755	-	BURPS1106A_1652	-	hypothetical protein
1639	 72.46	0	1606479..1606961	+	160	126452868	-	BURPS1106A_1653	-	NUDIX family hydrolase
1640	 74.07	+1	1607078..1607212	+	44	126453546	-	BURPS1106A_1654	-	hypothetical protein
1641	 64.91	0	1607305..1609014	-	569	126451537	glnS	BURPS1106A_1655	-	glutaminyl-tRNA synthetase
1642	 72.50	0	1609264..1609503	+	79	126452646	-	BURPS1106A_1656	-	hypothetical protein
1643	 70.83	0	1609635..1609802	-	55	126454246	-	BURPS1106A_1657	-	hypothetical protein
1644	 71.17	0	1609832..1611052	-	406	126455081	-	BURPS1106A_1658	-	CAIB/BAIF family protein
1645	 75.00	+1	1611154..1611285	-	43	126451668	-	BURPS1106A_1659	-	hypothetical protein
1646	 68.34	0	1611604..1614228	+	874	126451905	alaS	BURPS1106A_1660	-	alanyl-tRNA synthetase
1647	 72.51	0	1614760..1615785	-	341	126454011	-	BURPS1106A_1661	-	LysR family transcriptional regulator
1648	 73.07	+1	1615872..1617512	+	546	126455159	-	BURPS1106A_1662	-	major facilitator superfamily permease
1649	 72.06	0	1617844..1619400	+	518	126455207	-	BURPS1106A_1664	-	peptidase s1, chymotrypsin:pdz/dhr/glgf
1650	 77.40	+1	1619355..1619531	-	58	126454044	-	BURPS1106A_1663	-	hypothetical protein
1651	 63.86	0	1619619..1620296	-	225	126451611	-	BURPS1106A_1665	-	hypothetical protein
1652	 69.75	0	1620588..1621139	+	183	126453396	-	BURPS1106A_1666	-	MutT/NUDIX NTP pyrophosphatase
1653	 68.45	0	1621239..1621574	-	111	126453939	-	BURPS1106A_1667	-	hypothetical protein
1654	 71.80	0	1621791..1622939	+	382	126454540	-	BURPS1106A_1668	-	NAD-dependent 4-hydroxybutyrate dehydrogenase
1655	 72.75	0	1622936..1623280	+	114	126453157	-	BURPS1106A_1669	-	hypothetical protein
1656	 70.67	0	1623181..1623630	+	149	126452120	-	BURPS1106A_1670	-	thioesterase family protein
1657	 72.76	0	1623635..1624570	+	311	126452113	-	BURPS1106A_1671	-	branched chain amino acid ABC transporter permease
1658	 74.21	+1	1624599..1626839	+	746	126454727	-	BURPS1106A_1672	-	ABC-transporter
1659	 74.89	+1	1626836..1627540	+	234	126453532	-	BURPS1106A_1673	-	ABC transporter, ATP-binding protein
1660	 70.15	0	1627657..1628460	-	267	126452492	iolB	BURPS1106A_1674	-	myo-inositol catabolism protein IolB
1661	 70.36	0	1628460..1629380	-	306	126454709	-	BURPS1106A_1675	-	AP endonuclease
1662	 73.52	+1	1629377..1631317	-	646	126453463	iolD	BURPS1106A_1676	-	iolD protein
1663	 71.96	0	1631373..1633373	-	666	126452179	iolC	BURPS1106A_1677	-	iolC protein
1664	 65.29	0	1633387..1634187	-	266	126451775	-	BURPS1106A_1678	-	carbohydrate ABC transporter ATP-binding protein
1665	 68.24	0	1634200..1635345	-	381	126455364	-	BURPS1106A_1679	-	carbohydrate ABC transporter permease
1666	 65.41	0	1635446..1636558	-	370	126453990	-	BURPS1106A_1680	-	carbohydrate ABC transporter periplasmic sugar-binding protein
1667	 67.23	0	1636740..1637621	+	293	126451672	-	BURPS1106A_1681	-	RpiR family transcriptional regulator
1668	 71.67	0	1637614..1638633	+	339	126452718	-	BURPS1106A_1682	-	putative inositol 2-dehydrogenase
1669	 72.83	0	1638646..1639683	+	345	126454442	-	BURPS1106A_1683	-	oxidoreductase family protein
1670	 62.77	0	1639848..1640078	+	76	126454544	-	BURPS1106A_1684	-	hypothetical protein
1671	 70.54	0	1640354..1640740	+	128	126452323	-	BURPS1106A_1685	-	hypothetical protein
1672	 63.65	0	1641044..1641772	+	242	126453297	-	BURPS1106A_1686	-	DNA-binding response regulator
1673	 70.62	0	1641769..1643133	+	454	126452942	-	BURPS1106A_1687	-	lysM domain-containing protein
1674	 69.26	0	1643144..1645537	+	797	126453533	-	BURPS1106A_1688	-	sensor histidine kinase
1675	 73.14	+1	1645626..1646243	+	205	126453979	-	BURPS1106A_1689	-	putative lipoprotein
1676	 63.83	0	1646304..1647185	-	293	126451502	galU	BURPS1106A_1690	-	UTP-glucose-1-phosphate uridylyltransferase
1677	 66.25	0	1647272..1650139	-	955	126452676	valS	BURPS1106A_1691	-	valyl-tRNA synthetase
1678	 69.12	0	1650279..1652642	+	787	126453724	uvrD	BURPS1106A_1692	-	DNA helicase II
1679	 71.74	0	1652639..1653427	+	262	126454861	mtnN	BURPS1106A_1693	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
1680	 67.30	0	1653764..1655017	-	417	126455407	fsr	BURPS1106A_1694	-	fosmidomycin resistance protein
1681	 69.65	0	1655102..1657045	+	647	126453706	-	BURPS1106A_1696	-	methyl-accepting chemotaxis protein
1682	 73.54	+1	1657018..1657308	-	96	126452593	-	BURPS1106A_1695	-	hypothetical protein
1683	 68.03	0	1657396..1658277	-	293	126454942	-	BURPS1106A_1697	-	putative fusaric acid resistance protein
1684	 64.22	0	1658291..1658494	-	67	126454915	-	BURPS1106A_1698	-	hypothetical protein
1685	 71.03	0	1658491..1660692	-	733	126452079	-	BURPS1106A_1699	-	putative fusaric acid resistance protein
1686	 73.61	+1	1660709..1662466	-	585	126454776	-	BURPS1106A_1700	-	putative fusaric acid efflux protein
1687	 68.68	0	1662639..1663580	+	313	126453910	-	BURPS1106A_1701	-	LysR family transcriptional regulator
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.