IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1239	 69.03	0	1222592..1223566	+	324	126452470	-	BURPS1106A_1245	-	zinc-binding dehydrogenase family oxidoreductase
1240	 80.07	+2	1223572..1223862	+	96	126453780	-	BURPS1106A_1246	-	hypothetical protein
1241	 53.17	-2	1223885..1224010	-	41	126454910	-	BURPS1106A_1247	-	hypothetical protein
1242	 61.36	-1	1223992..1224123	+	43	126452063	kdpF	BURPS1106A_1248	-	potassium-transporting ATPase, KdpF subunit
1243	 68.16	0	1224120..1225928	+	602	126453034	kdpA	BURPS1106A_1249	-	potassium-transporting ATPase subunit A
1244	 67.72	0	1225997..1228084	+	695	126454417	kdpB	BURPS1106A_1250	-	K+-transporting ATPase, B subunit
1245	 70.62	0	1228097..1228678	+	193	126453575	kdpC	BURPS1106A_1251	-	K+-transporting ATPase, C subunit
1246	 70.00	0	1228787..1228966	+	59	126452683	-	BURPS1106A_1252	-	hypothetical protein
1247	 72.20	0	1228963..1231944	+	993	126453510	kdpD	BURPS1106A_1253	-	sensor histidine kinase KdpD
1248	 69.50	0	1231931..1232635	+	234	126455264	kdpE	BURPS1106A_1254	-	KDP operon transcriptional regulatory protein KdpE
1249	 70.83	0	1232837..1233004	-	55	126452110	-	BURPS1106A_1255	-	hypothetical protein
1250	 67.34	0	1233025..1233321	+	98	126453138	-	BURPS1106A_1256	-	hypothetical protein
1251	 68.54	0	1233537..1233857	+	106	126454766	-	BURPS1106A_1257	-	SMR family multidrug efflux pump
1252	 69.90	0	1234049..1234666	+	205	126451843	-	BURPS1106A_1258	-	hypothetical protein
1253	 74.16	+1	1234663..1237305	+	880	126452428	-	BURPS1106A_1259	-	efflux ABC transporter, permease protein
1254	 58.54	-1	1237302..1237424	+	40	126454344	-	BURPS1106A_1260	-	hypothetical protein
1255	 68.61	0	1237405..1237815	+	136	126455269	-	BURPS1106A_1261	-	hypothetical protein
1256	 63.57	0	1237837..1237965	+	42	126455116	-	BURPS1106A_1262	-	hypothetical protein
1257	 70.63	0	1237926..1238657	+	243	126452703	-	BURPS1106A_1263	-	threonyl/alanyl tRNA synthetase domain-containing protein
1258	 73.36	+1	1238654..1239295	+	213	126453306	-	BURPS1106A_1264	-	hypothetical protein
1259	 73.48	+1	1239639..1241033	+	464	126454185	-	BURPS1106A_1265	-	amidase
1260	 71.09	0	1241290..1242579	+	429	126454498	-	BURPS1106A_1266	-	major facilitator family transporter
1261	 73.20	+1	1242780..1242932	+	50	126452881	-	BURPS1106A_1268	-	hypothetical protein
1262	 71.29	0	1242890..1244707	-	605	126452353	-	BURPS1106A_1267	-	hypothetical protein
1263	 82.46	+2	1244613..1244726	+	37	126453809	-	BURPS1106A_1269	-	hypothetical protein
1264	 74.18	+1	1245333..1246091	-	252	126454110	-	BURPS1106A_1270	-	glucose-1-dehydrogenase
1265	 67.01	0	1246509..1247096	-	195	126454985	-	BURPS1106A_1271	-	decarboxylase family protein
1266	 59.72	-1	1247093..1247812	-	239	126451830	-	BURPS1106A_1272	-	TetR family transcriptional regulator
1267	 70.33	0	1248049..1248594	-	181	126452688	dgkA	BURPS1106A_1273	-	diacylglycerol kinase
1268	 69.28	0	1248603..1249637	-	344	126454366	-	BURPS1106A_1274	-	glycosyl transferase, group 1 family protein
1269	 65.50	0	1249659..1250597	-	312	126455178	-	BURPS1106A_1275	-	Ser/Thr protein phosphatase family protein
1270	 75.88	+1	1250688..1251197	-	169	126454694	-	BURPS1106A_1276	-	RDD family protein
1271	 71.16	0	1251204..1251959	-	251	126451579	-	BURPS1106A_1277	-	hypothetical protein
1272	 73.76	+1	1251990..1252412	-	140	126454392	-	BURPS1106A_1278	-	hypothetical protein
1273	 62.39	0	1252409..1252969	-	186	126455327	-	BURPS1106A_1279	-	RNA polymerase factor sigma-70
1274	 68.79	0	1253097..1253237	+	46	126455107	-	BURPS1106A_1280	-	hypothetical protein
1275	 63.66	0	1253365..1255128	+	587	126452197	ilvB	BURPS1106A_1281	-	acetolactate synthase 3 catalytic subunit
1276	 60.77	-1	1255240..1255731	+	163	126454468	ilvH	BURPS1106A_1282	-	acetolactate synthase 3 regulatory subunit
1277	 65.39	0	1255814..1256830	+	338	126453783	ilvC	BURPS1106A_1283	-	ketol-acid reductoisomerase
1278	 66.36	0	1256952..1257602	+	216	126453211	psd	BURPS1106A_1284	-	phosphatidylserine decarboxylase
1279	 69.19	0	1257619..1258491	+	290	126452290	pssA	BURPS1106A_1285	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
1280	 64.79	0	1258850..1260397	+	515	126455016	leuA	BURPS1106A_1286	-	2-isopropylmalate synthase
1281	 68.67	0	1260532..1262079	-	515	126454102	-	BURPS1106A_1287	-	sulfate permease family inorganic anion transporter
1282	 71.70	0	1262136..1262771	-	211	126451942	-	BURPS1106A_1288	-	putative carbonic anhydrase
1283	 64.47	0	1263215..1263715	-	166	126454526	-	BURPS1106A_1289	-	putative lipoprotein
1284	 71.56	0	1263714..1264142	+	142	126453638	-	BURPS1106A_1290	-	hypothetical protein
1285	 70.11	0	1264094..1265371	+	425	126453238	-	BURPS1106A_1291	-	putative amino acid-binding protein
1286	 62.59	0	1265477..1265746	+	89	126451731	rpsO	BURPS1106A_1292	-	30S ribosomal protein S15
1287	 64.29	0	1265888..1266097	-	69	126455209	-	BURPS1106A_1293	-	hypothetical protein
1288	 66.01	0	1266050..1268191	+	713	126454918	pnp	BURPS1106A_1294	-	polynucleotide phosphorylase/polyadenylase
1289	 69.53	0	1268244..1269326	+	360	126453705	-	BURPS1106A_1295	-	zinc-binding dehydrogenase family oxidoreductase
1290	 71.54	0	1269386..1270186	+	266	126452700	tpiA	BURPS1106A_1296	-	triosephosphate isomerase
1291	 67.46	0	1270266..1270643	+	125	126451944	secG	BURPS1106A_1297	-	preprotein translocase subunit SecG
1292	 56.39	-2	1270992..1271351	+	119	126452694	nuoA	BURPS1106A_1299	-	NADH dehydrogenase subunit A
1293	 65.83	0	1271414..1271893	+	159	126451839	nuoB	BURPS1106A_1300	-	NADH dehydrogenase subunit B
1294	 63.35	0	1271914..1272516	+	200	126454408	nuoC	BURPS1106A_1301	-	NADH dehydrogenase subunit C
1295	 62.84	0	1272527..1273780	+	417	126453345	nuoD	BURPS1106A_1302	-	NADH dehydrogenase subunit D
1296	 60.70	-1	1273949..1274434	+	161	126454652	nuoE	BURPS1106A_1303	-	NADH dehydrogenase subunit E
1297	 66.21	0	1274431..1275741	+	436	126454273	nuoF	BURPS1106A_1304	-	NADH-quinone oxidoreductase, F subunit
1298	 68.64	0	1275824..1278154	+	776	126453390	nuoG	BURPS1106A_1305	-	NADH dehydrogenase subunit G
1299	 63.47	0	1278155..1279219	+	354	126452023	nuoH	BURPS1106A_1306	-	NADH dehydrogenase subunit H
1300	 61.96	-1	1279235..1279723	+	162	126452103	nuoI	BURPS1106A_1307	-	NADH dehydrogenase subunit I
1301	 65.60	0	1279833..1280489	+	218	126453874	nuoJ	BURPS1106A_1308	-	NADH dehydrogenase subunit J
1302	 56.54	-2	1280508..1280813	+	101	126452436	nuoK	BURPS1106A_1309	-	NADH dehydrogenase subunit K
1303	 63.68	0	1280831..1282870	+	679	126451636	nuoL	BURPS1106A_1310	-	NADH dehydrogenase subunit L
1304	 62.91	0	1282886..1284376	+	496	126451700	nuoM	BURPS1106A_1311	-	NADH dehydrogenase subunit M
1305	 65.78	0	1284401..1285873	+	490	126455306	nuoN	BURPS1106A_1312	-	NADH dehydrogenase subunit N
1306	 61.76	-1	1285873..1286178	+	101	126454747	-	BURPS1106A_1313	-	hypothetical protein
1307	 63.79	0	1286215..1286805	+	196	126453829	-	BURPS1106A_1314	-	NUDIX family hydrolase
1308	 68.09	0	1286957..1287379	+	140	126453643	-	BURPS1106A_1315	-	hypothetical protein
1309	 66.58	0	1287440..1288636	+	398	126453242	-	BURPS1106A_1316	-	acyl-CoA dehydrogenase
1310	 72.05	0	1288648..1289781	+	377	126452328	-	BURPS1106A_1317	-	acyl-CoA dehydrogenase domain-containing protein
1311	 62.75	0	1289822..1290280	+	152	126454967	-	BURPS1106A_1318	-	MoaC domain-containing protein
1312	 68.94	0	1290277..1290759	+	160	126453094	-	BURPS1106A_1319	-	MaoC domain-containing protein
1313	 68.88	0	1290852..1292114	+	420	126451974	-	BURPS1106A_1320	-	putative lipoprotein
1314	 78.72	+2	1292169..1292309	+	46	126451899	-	BURPS1106A_1321	-	hypothetical protein
1315	 68.95	0	1292398..1293624	-	408	126454772	-	BURPS1106A_1322	-	acyl-CoA dehydrogenase domain-containing protein
1316	 68.74	0	1293668..1294774	-	368	126452325	-	BURPS1106A_1323	-	phosphotransferase enzyme family protein
1317	 68.63	0	1294802..1295515	-	237	126453226	-	BURPS1106A_1324	-	phosphoglycerate mutase family protein
1318	 70.71	0	1295525..1296316	-	263	126453807	-	BURPS1106A_1325	-	enoyl-CoA hydratase
1319	 65.83	0	1296355..1296474	+	39	126454706	-	BURPS1106A_1326	-	hypothetical protein
1320	 63.01	0	1296556..1297212	+	218	126454209	-	BURPS1106A_1327	-	glutathione S-transferase family protein
1321	 66.41	0	1297443..1298618	-	391	126455071	-	BURPS1106A_1328	-	putative aminotransferase
1322	 74.25	+1	1298664..1299296	-	210	126452371	-	BURPS1106A_1329	-	hypothetical protein
1323	 66.03	0	1299390..1300172	+	260	126453140	-	BURPS1106A_1330	-	hypothetical protein
1324	 65.63	0	1300231..1301385	+	384	126452506	-	BURPS1106A_1331	-	zinc carboxypeptidase family protein
1325	 64.57	0	1301596..1302216	-	206	126454436	-	BURPS1106A_1332	-	hypothetical protein
1326	 68.59	0	1302376..1303050	-	224	126454801	-	BURPS1106A_1333	-	hypothetical protein
1327	 65.83	0	1303117..1303956	-	279	126453676	-	BURPS1106A_1334	-	putative DNA-binding response regulator
1328	 66.50	0	1304159..1305376	-	405	126453022	-	BURPS1106A_1335	-	hypothetical protein
1329	 46.15	-2	1305832..1305948	+	38	126451932	-	BURPS1106A_1336	-	hypothetical protein
1330	 65.19	0	1312058..1313947	+	629	126455383	-	BURPS1106A_1342	-	M24 family metallopeptidase
1331	 62.94	0	1314093..1315166	-	357	126454174	-	BURPS1106A_1343	-	hypothetical protein
1332	 64.59	0	1315386..1316396	+	336	126455409	-	BURPS1106A_1344	-	AraC family transcriptional regulator
1333	 66.20	0	1316716..1317990	+	424	126454274	serA	BURPS1106A_1345	-	D-3-phosphoglycerate dehydrogenase
1334	 60.99	-1	1318010..1318291	+	93	126453802	-	BURPS1106A_1346	-	hypothetical protein
1335	 69.28	0	1318325..1319014	+	229	126452686	-	BURPS1106A_1347	-	putative transposase
1336	 68.03	0	1319434..1320459	-	341	126452885	-	BURPS1106A_1348	-	aliphatic sulfonate ABC transporter substrate-binding protein
1337	 71.93	0	1320456..1320569	-	37	126451621	-	BURPS1106A_1349	-	hypothetical protein
1338	 73.50	+1	1320667..1321017	-	116	126454550	-	BURPS1106A_1350	-	hypothetical protein
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.