IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1194	 74.53	+1	1180294..1180611	+	105	126454546	-	BURPS1106A_1200	-	hypothetical protein
1195	 68.94	0	1180625..1182073	+	482	126454058	-	BURPS1106A_1201	-	DEAD/DEAH box helicase
1196	 62.67	0	1182400..1182549	-	49	126451765	-	BURPS1106A_1202	-	hypothetical protein
1197	 74.16	+1	1182573..1183466	-	297	126455073	gluQ	BURPS1106A_1203	-	glutamyl-Q tRNA(Asp) synthetase
1198	 67.44	0	1183510..1184409	-	299	126454203	-	BURPS1106A_1204	-	hypothetical protein
1199	 78.95	+2	1184578..1184862	+	94	126454089	-	BURPS1106A_1205	-	Fis family transcriptional regulator
1200	 66.87	0	1185049..1188573	+	1174	126453191	dnaE	BURPS1106A_1206	-	DNA polymerase III subunit alpha
1201	 65.22	0	1188679..1190403	+	574	126454551	msbA	BURPS1106A_1207	-	lipid A export ATP-binding/permease protein MsbA
1202	 68.98	0	1190457..1191539	+	360	126453690	lgtG	BURPS1106A_1208	-	lipooligosaccharide glycosyl transferase G
1203	 69.81	0	1191821..1192966	+	381	126451848	-	BURPS1106A_1209	-	heptosyltransferase
1204	 67.44	0	1192963..1194261	+	432	126455061	-	BURPS1106A_1210	-	hypothetical protein
1205	 70.31	0	1194258..1195520	+	420	126454176	-	BURPS1106A_1211	-	glycosyl transferase, group 1 family protein
1206	 68.88	0	1195607..1196779	+	390	126452914	-	BURPS1106A_1212	-	putative lipopolysaccharide heptosyltransferase III
1207	 65.49	0	1197046..1197810	-	254	126454929	-	BURPS1106A_1213	-	glycosyl transferase, group 2 family protein
1208	 70.34	0	1198268..1198648	+	126	126453775	-	BURPS1106A_1214	-	hypothetical protein
1209	 67.00	0	1198929..1199522	-	197	126452639	-	BURPS1106A_1215	-	hypothetical protein
1210	 71.10	0	1199772..1201034	-	420	126451518	-	BURPS1106A_1216	-	major facilitator transporter
1211	 75.23	+1	1201031..1202011	-	326	126451841	-	BURPS1106A_1217	-	putative lipoprotein
1212	 66.67	0	1202345..1202461	-	38	126452982	-	BURPS1106A_1218	-	hypothetical protein
1213	 64.02	0	1202715..1203167	-	150	126454095	-	BURPS1106A_1219	-	carboxymuconolactone decarboxylase family protein
1214	 75.62	+1	1203213..1203659	-	148	126455220	-	BURPS1106A_1220	-	hypothetical protein
1215	 69.13	0	1203656..1204588	-	310	126455217	-	BURPS1106A_1221	-	RNA polymerase sigma-70 factor
1216	 67.36	0	1204727..1205161	-	144	126453916	-	BURPS1106A_1222	-	hypothetical protein
1217	 72.65	0	1205187..1205303	+	38	126455186	-	BURPS1106A_1224	-	hypothetical protein
1218	 64.97	0	1205297..1205590	-	97	126452009	-	BURPS1106A_1223	-	hypothetical protein
1219	 73.46	+1	1206007..1206315	-	102	126455339	-	BURPS1106A_1225	-	hypothetical protein
1220	 71.56	0	1206314..1206640	+	108	126454423	-	BURPS1106A_1226	-	hypothetical protein
1221	 76.00	+1	1206719..1206868	-	49	126452812	-	BURPS1106A_1227	-	hypothetical protein
1222	 69.77	0	1206990..1207118	-	42	126452180	-	BURPS1106A_1228	-	hypothetical protein
1223	 70.01	0	1207789..1208505	+	238	126451452	-	BURPS1106A_1229	-	putative phospholipase C accessory protein
1224	 65.51	0	1208579..1209964	+	461	126454856	-	BURPS1106A_1230	-	hypothetical protein
1225	 69.11	0	1209992..1211380	-	462	126453470	yicE	BURPS1106A_1231	-	xanthine permease
1226	 69.42	0	1211345..1211635	+	96	126453267	-	BURPS1106A_1232	-	hypothetical protein
1227	 65.71	0	1211698..1213164	-	488	126451783	-	BURPS1106A_1233	-	ribonuclease
1228	 73.97	+1	1213173..1213802	-	209	126455201	maf	BURPS1106A_1234	-	Maf-like protein
1229	 71.13	0	1213855..1214325	-	156	126453487	-	BURPS1106A_1235	-	SPOUT methyltransferase superfamily protein
1230	 69.46	0	1214382..1214846	-	154	126452827	-	BURPS1106A_1236	-	iojap domain-containing protein
1231	 75.17	+1	1214851..1215603	-	250	126453400	nadD	BURPS1106A_1237	-	nicotinic acid mononucleotide adenylyltransferase
1232	 69.26	0	1215600..1216523	-	307	126454604	hemF	BURPS1106A_1238	-	coproporphyrinogen III oxidase
1233	 68.23	0	1216654..1217931	-	425	126455187	purD	BURPS1106A_1239	-	phosphoribosylamine--glycine ligase
1234	 64.47	0	1218042..1218770	-	242	126454071	-	BURPS1106A_1240	-	hypothetical protein
1235	 76.91	+1	1218733..1219269	-	178	126452798	-	BURPS1106A_1241	-	hypothetical protein
1236	 66.67	0	1219308..1219958	-	216	126455154	upp	BURPS1106A_1242	-	uracil phosphoribosyltransferase
1237	 72.82	0	1220216..1220995	+	259	126452270	-	BURPS1106A_1243	-	short chain dehydrogenase/reductase family oxidoreductase
1238	 71.25	0	1221234..1221626	+	130	126453334	mgsA	BURPS1106A_1244	-	methylglyoxal synthase
1239	 69.03	0	1222592..1223566	+	324	126452470	-	BURPS1106A_1245	-	zinc-binding dehydrogenase family oxidoreductase
1240	 80.07	+2	1223572..1223862	+	96	126453780	-	BURPS1106A_1246	-	hypothetical protein
1241	 53.17	-2	1223885..1224010	-	41	126454910	-	BURPS1106A_1247	-	hypothetical protein
1242	 61.36	-1	1223992..1224123	+	43	126452063	kdpF	BURPS1106A_1248	-	potassium-transporting ATPase, KdpF subunit
1243	 68.16	0	1224120..1225928	+	602	126453034	kdpA	BURPS1106A_1249	-	potassium-transporting ATPase subunit A
1244	 67.72	0	1225997..1228084	+	695	126454417	kdpB	BURPS1106A_1250	-	K+-transporting ATPase, B subunit
1245	 70.62	0	1228097..1228678	+	193	126453575	kdpC	BURPS1106A_1251	-	K+-transporting ATPase, C subunit
1246	 70.00	0	1228787..1228966	+	59	126452683	-	BURPS1106A_1252	-	hypothetical protein
1247	 72.20	0	1228963..1231944	+	993	126453510	kdpD	BURPS1106A_1253	-	sensor histidine kinase KdpD
1248	 69.50	0	1231931..1232635	+	234	126455264	kdpE	BURPS1106A_1254	-	KDP operon transcriptional regulatory protein KdpE
1249	 70.83	0	1232837..1233004	-	55	126452110	-	BURPS1106A_1255	-	hypothetical protein
1250	 67.34	0	1233025..1233321	+	98	126453138	-	BURPS1106A_1256	-	hypothetical protein
1251	 68.54	0	1233537..1233857	+	106	126454766	-	BURPS1106A_1257	-	SMR family multidrug efflux pump
1252	 69.90	0	1234049..1234666	+	205	126451843	-	BURPS1106A_1258	-	hypothetical protein
1253	 74.16	+1	1234663..1237305	+	880	126452428	-	BURPS1106A_1259	-	efflux ABC transporter, permease protein
1254	 58.54	-1	1237302..1237424	+	40	126454344	-	BURPS1106A_1260	-	hypothetical protein
1255	 68.61	0	1237405..1237815	+	136	126455269	-	BURPS1106A_1261	-	hypothetical protein
1256	 63.57	0	1237837..1237965	+	42	126455116	-	BURPS1106A_1262	-	hypothetical protein
1257	 70.63	0	1237926..1238657	+	243	126452703	-	BURPS1106A_1263	-	threonyl/alanyl tRNA synthetase domain-containing protein
1258	 73.36	+1	1238654..1239295	+	213	126453306	-	BURPS1106A_1264	-	hypothetical protein
1259	 73.48	+1	1239639..1241033	+	464	126454185	-	BURPS1106A_1265	-	amidase
1260	 71.09	0	1241290..1242579	+	429	126454498	-	BURPS1106A_1266	-	major facilitator family transporter
1261	 73.20	+1	1242780..1242932	+	50	126452881	-	BURPS1106A_1268	-	hypothetical protein
1262	 71.29	0	1242890..1244707	-	605	126452353	-	BURPS1106A_1267	-	hypothetical protein
1263	 82.46	+2	1244613..1244726	+	37	126453809	-	BURPS1106A_1269	-	hypothetical protein
1264	 74.18	+1	1245333..1246091	-	252	126454110	-	BURPS1106A_1270	-	glucose-1-dehydrogenase
1265	 67.01	0	1246509..1247096	-	195	126454985	-	BURPS1106A_1271	-	decarboxylase family protein
1266	 59.72	-1	1247093..1247812	-	239	126451830	-	BURPS1106A_1272	-	TetR family transcriptional regulator
1267	 70.33	0	1248049..1248594	-	181	126452688	dgkA	BURPS1106A_1273	-	diacylglycerol kinase
1268	 69.28	0	1248603..1249637	-	344	126454366	-	BURPS1106A_1274	-	glycosyl transferase, group 1 family protein
1269	 65.50	0	1249659..1250597	-	312	126455178	-	BURPS1106A_1275	-	Ser/Thr protein phosphatase family protein
1270	 75.88	+1	1250688..1251197	-	169	126454694	-	BURPS1106A_1276	-	RDD family protein
1271	 71.16	0	1251204..1251959	-	251	126451579	-	BURPS1106A_1277	-	hypothetical protein
1272	 73.76	+1	1251990..1252412	-	140	126454392	-	BURPS1106A_1278	-	hypothetical protein
1273	 62.39	0	1252409..1252969	-	186	126455327	-	BURPS1106A_1279	-	RNA polymerase factor sigma-70
1274	 68.79	0	1253097..1253237	+	46	126455107	-	BURPS1106A_1280	-	hypothetical protein
1275	 63.66	0	1253365..1255128	+	587	126452197	ilvB	BURPS1106A_1281	-	acetolactate synthase 3 catalytic subunit
1276	 60.77	-1	1255240..1255731	+	163	126454468	ilvH	BURPS1106A_1282	-	acetolactate synthase 3 regulatory subunit
1277	 65.39	0	1255814..1256830	+	338	126453783	ilvC	BURPS1106A_1283	-	ketol-acid reductoisomerase
1278	 66.36	0	1256952..1257602	+	216	126453211	psd	BURPS1106A_1284	-	phosphatidylserine decarboxylase
1279	 69.19	0	1257619..1258491	+	290	126452290	pssA	BURPS1106A_1285	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
1280	 64.79	0	1258850..1260397	+	515	126455016	leuA	BURPS1106A_1286	-	2-isopropylmalate synthase
1281	 68.67	0	1260532..1262079	-	515	126454102	-	BURPS1106A_1287	-	sulfate permease family inorganic anion transporter
1282	 71.70	0	1262136..1262771	-	211	126451942	-	BURPS1106A_1288	-	putative carbonic anhydrase
1283	 64.47	0	1263215..1263715	-	166	126454526	-	BURPS1106A_1289	-	putative lipoprotein
1284	 71.56	0	1263714..1264142	+	142	126453638	-	BURPS1106A_1290	-	hypothetical protein
1285	 70.11	0	1264094..1265371	+	425	126453238	-	BURPS1106A_1291	-	putative amino acid-binding protein
1286	 62.59	0	1265477..1265746	+	89	126451731	rpsO	BURPS1106A_1292	-	30S ribosomal protein S15
1287	 64.29	0	1265888..1266097	-	69	126455209	-	BURPS1106A_1293	-	hypothetical protein
1288	 66.01	0	1266050..1268191	+	713	126454918	pnp	BURPS1106A_1294	-	polynucleotide phosphorylase/polyadenylase
1289	 69.53	0	1268244..1269326	+	360	126453705	-	BURPS1106A_1295	-	zinc-binding dehydrogenase family oxidoreductase
1290	 71.54	0	1269386..1270186	+	266	126452700	tpiA	BURPS1106A_1296	-	triosephosphate isomerase
1291	 67.46	0	1270266..1270643	+	125	126451944	secG	BURPS1106A_1297	-	preprotein translocase subunit SecG
1292	 56.39	-2	1270992..1271351	+	119	126452694	nuoA	BURPS1106A_1299	-	NADH dehydrogenase subunit A
1293	 65.83	0	1271414..1271893	+	159	126451839	nuoB	BURPS1106A_1300	-	NADH dehydrogenase subunit B
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.