IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1174	 65.04	0	1160167..1160535	+	122	126452108	-	BURPS1106A_1180	-	cytochrome c family protein
1175	 67.21	0	1161024..1161575	-	183	126454962	-	BURPS1106A_1181	-	hypothetical protein
1176	 74.04	+1	1161997..1163067	+	356	126455027	-	BURPS1106A_1182	-	hypothetical protein
1177	 65.43	0	1163200..1163844	-	214	126451469	nth	BURPS1106A_1183	-	endonuclease III
1178	 73.42	+1	1163849..1164721	-	290	126453295	-	BURPS1106A_1184	-	ferredoxin
1179	 62.09	-1	1164979..1165611	+	210	126451522	-	BURPS1106A_1185	-	TetR family transcriptional regulator
1180	 66.26	0	1165754..1167220	-	488	126452644	phaZ	BURPS1106A_1186	-	intracellular poly[D(-)-3-hydroxybutyrate] (PHB) depolymerase
1181	 65.87	0	1167158..1167283	+	41	126453609	-	BURPS1106A_1187	-	hypothetical protein
1182	 57.02	-1	1167285..1167398	-	37	126454902	-	BURPS1106A_1188	-	hypothetical protein
1183	 70.10	0	1167440..1169272	-	610	126455215	-	BURPS1106A_1189	-	glycosy hydrolase family protein
1184	 66.67	0	1169259..1169375	+	38	126451613	-	BURPS1106A_1190	-	hypothetical protein
1185	 69.05	0	1169509..1170684	+	391	126453030	-	BURPS1106A_1191	-	hypothetical protein
1186	 74.07	+1	1170707..1170841	+	44	126453781	-	BURPS1106A_1192	-	hypothetical protein
1187	 74.39	+1	1170987..1176542	-	1851	126453240	ftsK	BURPS1106A_1193	-	DNA translocase FtsK
1188	 71.40	0	1176714..1177262	-	182	126454278	-	BURPS1106A_1194	-	hypothetical protein
1189	 73.33	+1	1177461..1177730	+	89	126454939	-	BURPS1106A_1195	-	hypothetical protein
1190	 71.93	0	1177996..1179210	+	404	126452032	purT	BURPS1106A_1196	-	phosphoribosylglycinamide formyltransferase 2
1191	 71.52	0	1179370..1179534	+	54	126451713	-	BURPS1106A_1197	-	putative lipoprotein
1192	 72.61	0	1179593..1179979	+	128	126452816	-	BURPS1106A_1198	-	hypothetical protein
1193	 75.31	+1	1179999..1180160	+	53	126455436	-	BURPS1106A_1199	-	hypothetical protein
1194	 74.53	+1	1180294..1180611	+	105	126454546	-	BURPS1106A_1200	-	hypothetical protein
1195	 68.94	0	1180625..1182073	+	482	126454058	-	BURPS1106A_1201	-	DEAD/DEAH box helicase
1196	 62.67	0	1182400..1182549	-	49	126451765	-	BURPS1106A_1202	-	hypothetical protein
1197	 74.16	+1	1182573..1183466	-	297	126455073	gluQ	BURPS1106A_1203	-	glutamyl-Q tRNA(Asp) synthetase
1198	 67.44	0	1183510..1184409	-	299	126454203	-	BURPS1106A_1204	-	hypothetical protein
1199	 78.95	+2	1184578..1184862	+	94	126454089	-	BURPS1106A_1205	-	Fis family transcriptional regulator
1200	 66.87	0	1185049..1188573	+	1174	126453191	dnaE	BURPS1106A_1206	-	DNA polymerase III subunit alpha
1201	 65.22	0	1188679..1190403	+	574	126454551	msbA	BURPS1106A_1207	-	lipid A export ATP-binding/permease protein MsbA
1202	 68.98	0	1190457..1191539	+	360	126453690	lgtG	BURPS1106A_1208	-	lipooligosaccharide glycosyl transferase G
1203	 69.81	0	1191821..1192966	+	381	126451848	-	BURPS1106A_1209	-	heptosyltransferase
1204	 67.44	0	1192963..1194261	+	432	126455061	-	BURPS1106A_1210	-	hypothetical protein
1205	 70.31	0	1194258..1195520	+	420	126454176	-	BURPS1106A_1211	-	glycosyl transferase, group 1 family protein
1206	 68.88	0	1195607..1196779	+	390	126452914	-	BURPS1106A_1212	-	putative lipopolysaccharide heptosyltransferase III
1207	 65.49	0	1197046..1197810	-	254	126454929	-	BURPS1106A_1213	-	glycosyl transferase, group 2 family protein
1208	 70.34	0	1198268..1198648	+	126	126453775	-	BURPS1106A_1214	-	hypothetical protein
1209	 67.00	0	1198929..1199522	-	197	126452639	-	BURPS1106A_1215	-	hypothetical protein
1210	 71.10	0	1199772..1201034	-	420	126451518	-	BURPS1106A_1216	-	major facilitator transporter
1211	 75.23	+1	1201031..1202011	-	326	126451841	-	BURPS1106A_1217	-	putative lipoprotein
1212	 66.67	0	1202345..1202461	-	38	126452982	-	BURPS1106A_1218	-	hypothetical protein
1213	 64.02	0	1202715..1203167	-	150	126454095	-	BURPS1106A_1219	-	carboxymuconolactone decarboxylase family protein
1214	 75.62	+1	1203213..1203659	-	148	126455220	-	BURPS1106A_1220	-	hypothetical protein
1215	 69.13	0	1203656..1204588	-	310	126455217	-	BURPS1106A_1221	-	RNA polymerase sigma-70 factor
1216	 67.36	0	1204727..1205161	-	144	126453916	-	BURPS1106A_1222	-	hypothetical protein
1217	 72.65	0	1205187..1205303	+	38	126455186	-	BURPS1106A_1224	-	hypothetical protein
1218	 64.97	0	1205297..1205590	-	97	126452009	-	BURPS1106A_1223	-	hypothetical protein
1219	 73.46	+1	1206007..1206315	-	102	126455339	-	BURPS1106A_1225	-	hypothetical protein
1220	 71.56	0	1206314..1206640	+	108	126454423	-	BURPS1106A_1226	-	hypothetical protein
1221	 76.00	+1	1206719..1206868	-	49	126452812	-	BURPS1106A_1227	-	hypothetical protein
1222	 69.77	0	1206990..1207118	-	42	126452180	-	BURPS1106A_1228	-	hypothetical protein
1223	 70.01	0	1207789..1208505	+	238	126451452	-	BURPS1106A_1229	-	putative phospholipase C accessory protein
1224	 65.51	0	1208579..1209964	+	461	126454856	-	BURPS1106A_1230	-	hypothetical protein
1225	 69.11	0	1209992..1211380	-	462	126453470	yicE	BURPS1106A_1231	-	xanthine permease
1226	 69.42	0	1211345..1211635	+	96	126453267	-	BURPS1106A_1232	-	hypothetical protein
1227	 65.71	0	1211698..1213164	-	488	126451783	-	BURPS1106A_1233	-	ribonuclease
1228	 73.97	+1	1213173..1213802	-	209	126455201	maf	BURPS1106A_1234	-	Maf-like protein
1229	 71.13	0	1213855..1214325	-	156	126453487	-	BURPS1106A_1235	-	SPOUT methyltransferase superfamily protein
1230	 69.46	0	1214382..1214846	-	154	126452827	-	BURPS1106A_1236	-	iojap domain-containing protein
1231	 75.17	+1	1214851..1215603	-	250	126453400	nadD	BURPS1106A_1237	-	nicotinic acid mononucleotide adenylyltransferase
1232	 69.26	0	1215600..1216523	-	307	126454604	hemF	BURPS1106A_1238	-	coproporphyrinogen III oxidase
1233	 68.23	0	1216654..1217931	-	425	126455187	purD	BURPS1106A_1239	-	phosphoribosylamine--glycine ligase
1234	 64.47	0	1218042..1218770	-	242	126454071	-	BURPS1106A_1240	-	hypothetical protein
1235	 76.91	+1	1218733..1219269	-	178	126452798	-	BURPS1106A_1241	-	hypothetical protein
1236	 66.67	0	1219308..1219958	-	216	126455154	upp	BURPS1106A_1242	-	uracil phosphoribosyltransferase
1237	 72.82	0	1220216..1220995	+	259	126452270	-	BURPS1106A_1243	-	short chain dehydrogenase/reductase family oxidoreductase
1238	 71.25	0	1221234..1221626	+	130	126453334	mgsA	BURPS1106A_1244	-	methylglyoxal synthase
1239	 69.03	0	1222592..1223566	+	324	126452470	-	BURPS1106A_1245	-	zinc-binding dehydrogenase family oxidoreductase
1240	 80.07	+2	1223572..1223862	+	96	126453780	-	BURPS1106A_1246	-	hypothetical protein
1241	 53.17	-2	1223885..1224010	-	41	126454910	-	BURPS1106A_1247	-	hypothetical protein
1242	 61.36	-1	1223992..1224123	+	43	126452063	kdpF	BURPS1106A_1248	-	potassium-transporting ATPase, KdpF subunit
1243	 68.16	0	1224120..1225928	+	602	126453034	kdpA	BURPS1106A_1249	-	potassium-transporting ATPase subunit A
1244	 67.72	0	1225997..1228084	+	695	126454417	kdpB	BURPS1106A_1250	-	K+-transporting ATPase, B subunit
1245	 70.62	0	1228097..1228678	+	193	126453575	kdpC	BURPS1106A_1251	-	K+-transporting ATPase, C subunit
1246	 70.00	0	1228787..1228966	+	59	126452683	-	BURPS1106A_1252	-	hypothetical protein
1247	 72.20	0	1228963..1231944	+	993	126453510	kdpD	BURPS1106A_1253	-	sensor histidine kinase KdpD
1248	 69.50	0	1231931..1232635	+	234	126455264	kdpE	BURPS1106A_1254	-	KDP operon transcriptional regulatory protein KdpE
1249	 70.83	0	1232837..1233004	-	55	126452110	-	BURPS1106A_1255	-	hypothetical protein
1250	 67.34	0	1233025..1233321	+	98	126453138	-	BURPS1106A_1256	-	hypothetical protein
1251	 68.54	0	1233537..1233857	+	106	126454766	-	BURPS1106A_1257	-	SMR family multidrug efflux pump
1252	 69.90	0	1234049..1234666	+	205	126451843	-	BURPS1106A_1258	-	hypothetical protein
1253	 74.16	+1	1234663..1237305	+	880	126452428	-	BURPS1106A_1259	-	efflux ABC transporter, permease protein
1254	 58.54	-1	1237302..1237424	+	40	126454344	-	BURPS1106A_1260	-	hypothetical protein
1255	 68.61	0	1237405..1237815	+	136	126455269	-	BURPS1106A_1261	-	hypothetical protein
1256	 63.57	0	1237837..1237965	+	42	126455116	-	BURPS1106A_1262	-	hypothetical protein
1257	 70.63	0	1237926..1238657	+	243	126452703	-	BURPS1106A_1263	-	threonyl/alanyl tRNA synthetase domain-containing protein
1258	 73.36	+1	1238654..1239295	+	213	126453306	-	BURPS1106A_1264	-	hypothetical protein
1259	 73.48	+1	1239639..1241033	+	464	126454185	-	BURPS1106A_1265	-	amidase
1260	 71.09	0	1241290..1242579	+	429	126454498	-	BURPS1106A_1266	-	major facilitator family transporter
1261	 73.20	+1	1242780..1242932	+	50	126452881	-	BURPS1106A_1268	-	hypothetical protein
1262	 71.29	0	1242890..1244707	-	605	126452353	-	BURPS1106A_1267	-	hypothetical protein
1263	 82.46	+2	1244613..1244726	+	37	126453809	-	BURPS1106A_1269	-	hypothetical protein
1264	 74.18	+1	1245333..1246091	-	252	126454110	-	BURPS1106A_1270	-	glucose-1-dehydrogenase
1265	 67.01	0	1246509..1247096	-	195	126454985	-	BURPS1106A_1271	-	decarboxylase family protein
1266	 59.72	-1	1247093..1247812	-	239	126451830	-	BURPS1106A_1272	-	TetR family transcriptional regulator
1267	 70.33	0	1248049..1248594	-	181	126452688	dgkA	BURPS1106A_1273	-	diacylglycerol kinase
1268	 69.28	0	1248603..1249637	-	344	126454366	-	BURPS1106A_1274	-	glycosyl transferase, group 1 family protein
1269	 65.50	0	1249659..1250597	-	312	126455178	-	BURPS1106A_1275	-	Ser/Thr protein phosphatase family protein
1270	 75.88	+1	1250688..1251197	-	169	126454694	-	BURPS1106A_1276	-	RDD family protein
1271	 71.16	0	1251204..1251959	-	251	126451579	-	BURPS1106A_1277	-	hypothetical protein
1272	 73.76	+1	1251990..1252412	-	140	126454392	-	BURPS1106A_1278	-	hypothetical protein
1273	 62.39	0	1252409..1252969	-	186	126455327	-	BURPS1106A_1279	-	RNA polymerase factor sigma-70
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.