IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.62   STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
71	 74.83	+1	68772..68918	+	48	126453086	-	BURPS1106A_0071	-	hypothetical protein
72	 70.98	0	69172..70377	+	401	126454300	-	BURPS1106A_0072	-	acetyl-CoA acetyltransferase
73	 70.86	0	70390..72513	+	707	126454240	-	BURPS1106A_0073	-	putative 3-hydroxyacyl-CoA dehydrogenase
74	 72.22	0	72510..72653	+	47	126455425	-	BURPS1106A_0074	-	hypothetical protein
75	 71.96	0	72919..74052	+	377	126451519	-	BURPS1106A_0075	-	CAIB/BAIF family protein
76	 67.90	0	74129..74695	-	188	126452654	-	BURPS1106A_0076	-	putative lipoprotein
77	 64.74	0	74801..74956	-	51	126452680	-	BURPS1106A_0077	-	hypothetical protein
78	 68.11	0	75043..75528	-	161	126453765	-	BURPS1106A_0078	-	hypothetical protein
79	 67.49	0	75535..76503	+	322	126452333	-	BURPS1106A_0079	-	hypothetical protein
80	 68.83	0	76490..76858	+	122	126453223	-	BURPS1106A_0080	-	putative lipoprotein
81	 58.64	-1	77081..77242	+	53	126451666	-	BURPS1106A_0082	-	hypothetical protein
82	 74.19	+1	77239..77517	-	92	126455423	-	BURPS1106A_0081	-	hypothetical protein
83	 74.70	+1	77544..78302	-	252	126451600	prtR	BURPS1106A_0083	-	transmembrane regulator PrtR
84	 68.41	0	78299..78814	-	171	126452547	-	BURPS1106A_0084	-	sigma-70 family RNA polymerase sigma factor
85	 70.63	0	78975..80060	+	361	126453938	-	BURPS1106A_0085	-	putative catalase
86	 64.77	0	80057..80584	+	175	126454920	-	BURPS1106A_0086	-	putative [Ni] hydrogenase, b-type cytochrome subunit
87	 51.22	-2	81137..82036	+	299	126454298	-	BURPS1106A_0087	-	methionine sulfoxide reductase A
88	 55.56	-2	82233..82385	+	50	126455421	-	BURPS1106A_0088	-	hypothetical protein
89	 56.44	-2	82644..82907	+	87	126451486	-	BURPS1106A_0089	-	transposase subfamily protein
90	 61.11	-1	82931..83092	+	53	126452608	-	BURPS1106A_0090	-	A, transposase OrfB
91	 56.70	-2	83097..83387	+	96	126452362	-	BURPS1106A_0091	-	transposase A
92	 62.46	0	83381..84235	+	284	126451517	-	BURPS1106A_0092	-	transposase B
93	 55.08	-2	84389..85225	-	278	126453892	-	BURPS1106A_0093	-	hypothetical protein
94	 60.66	-1	85693..86940	-	415	126452777	-	BURPS1106A_0094	-	hypothetical protein
95	 59.26	-1	87362..87685	+	107	126452186	-	BURPS1106A_0095	-	XRE family transcriptional regulator
96	 58.62	-1	87678..88547	+	289	126455121	-	BURPS1106A_0096	-	hypothetical protein
97	 58.36	-1	88777..91245	+	822	126453526	-	BURPS1106A_0097	-	type I restriction-modification system M subunit
98	 52.85	-2	91595..92542	+	315	126452645	-	BURPS1106A_0098	-	restriction endonuclease S subunits
99	 59.66	-1	92566..95835	+	1089	126453319	-	BURPS1106A_0099	-	type I site-specific deoxyribonuclease HsdR
100	 59.78	-1	95976..96527	+	183	126452415	-	BURPS1106A_0100	-	hypothetical protein
101	 64.16	0	97271..99739	-	822	126452573	gyrB	BURPS1106A_0101	-	DNA gyrase subunit B
102	 63.59	0	99928..101031	-	367	126451494	dnaN	BURPS1106A_0102	-	DNA polymerase III subunit beta
103	 65.73	0	101194..102795	-	533	126451895	dnaA	BURPS1106A_0103	-	chromosomal replication initiation protein
104	 65.93	0	103241..103375	+	44	126454640	rpmH	BURPS1106A_0104	-	50S ribosomal protein L34
105	 68.37	0	103449..103859	+	136	126452960	rnpA	BURPS1106A_0105	-	ribonuclease P protein component
106	 64.07	0	103939..104208	+	89	126452931	-	BURPS1106A_0106	-	hypothetical protein
107	 64.16	0	104217..105893	+	558	126453447	oxaA	BURPS1106A_0107	-	putative inner membrane protein translocase component YidC
108	 61.19	-1	106050..106469	-	139	126452589	-	BURPS1106A_0108	-	hypothetical protein
109	 53.23	-2	106341..106526	+	61	126452170	-	BURPS1106A_0109	-	hypothetical protein
110	 45.19	-2	106648..106782	-	44	126455321	-	BURPS1106A_0110	-	hypothetical protein
111	 69.02	0	106807..108210	+	467	126454342	trmE	BURPS1106A_0111	-	tRNA modification GTPase TrmE
112	 59.76	-1	108379..109608	+	409	126455326	-	BURPS1106A_0112	-	phage integrase family site specific recombinase
113	 66.88	0	110256..113108	-	950	126452256	-	BURPS1106A_0113	-	hypothetical protein
114	 63.74	0	113248..113589	-	113	126453425	-	BURPS1106A_0114	-	hypothetical protein
115	 61.63	-1	113586..113843	-	85	126452503	-	BURPS1106A_0115	-	hypothetical protein
116	 69.49	0	113836..114012	-	58	126453645	-	BURPS1106A_0116	-	hypothetical protein
117	 67.50	0	114380..114859	-	159	126454816	-	BURPS1106A_0117	-	hypothetical protein
118	 63.74	0	114859..115029	-	56	126451970	-	BURPS1106A_0118	-	hypothetical protein
119	 54.98	-2	115252..115773	-	173	126453007	-	BURPS1106A_0119	-	hypothetical protein
120	 60.72	-1	116181..117122	-	313	126454170	-	BURPS1106A_0120	-	hypothetical protein
121	 61.63	-1	118452..119285	-	277	126452875	-	BURPS1106A_0121	-	TnpB
122	 56.82	-2	119309..119572	-	87	126453029	-	BURPS1106A_0122	-	hypothetical protein
123	 57.41	-1	119871..120605	-	244	126452129	-	BURPS1106A_0123	-	hypothetical protein
124	 65.89	0	121171..122328	+	385	126455245	-	BURPS1106A_0124	-	putative lipoprotein
125	 60.23	-1	122894..123064	-	56	126454316	-	BURPS1106A_0125	-	hypothetical protein
126	 57.58	-1	123226..123786	+	186	126452458	speG	BURPS1106A_0126	-	diamine N-acetyltransferase
127	 50.00	-2	123859..123978	+	39	126451558	-	BURPS1106A_0127	-	hypothetical protein
128	 59.77	-1	124272..124619	+	115	126455131	-	BURPS1106A_0129	-	hypothetical protein
129	 74.40	+1	124609..124776	-	55	126454913	-	BURPS1106A_0128	-	hypothetical protein
130	 67.57	0	124839..125393	+	184	126455405	-	BURPS1106A_0130	-	hypothetical protein
131	 67.15	0	125590..126006	-	138	126453537	-	BURPS1106A_0131	-	glyoxalase family protein
132	 69.95	0	126408..127502	+	364	126454639	ada	BURPS1106A_0132	-	ADA regulatory protein
133	 74.64	+1	127526..128440	+	304	126452165	alkA	BURPS1106A_0133	-	DNA-3-methyladenine glycosylase 2
134	 67.72	0	128599..130212	+	537	126453055	gshA	BURPS1106A_0134	-	glutamate--cysteine ligase
135	 70.39	0	130226..131674	-	482	126453822	rpoD	BURPS1106A_0135	-	RNA polymerase sigma factor RpoD
136	 69.76	0	131937..132485	-	182	126454804	-	BURPS1106A_0136	-	hypothetical protein
137	 74.64	+1	132736..132873	+	45	126454673	-	BURPS1106A_0137	-	hypothetical protein
138	 66.49	0	133053..133622	-	189	126451523	-	BURPS1106A_0138	-	hypothetical protein
139	 71.31	0	133725..134693	-	322	126454337	-	BURPS1106A_0139	-	LysR family transcriptional regulator
140	 65.02	0	134836..135930	+	364	126455252	-	BURPS1106A_0140	-	extracellular solute-binding protein
141	 70.17	0	135959..137071	+	370	126452138	-	BURPS1106A_0141	-	histone deacetylase family protein
142	 67.47	0	137082..137957	+	291	126453061	-	BURPS1106A_0142	-	carbon-nitrogen family hydrolase
143	 69.89	0	138094..138558	-	154	126453853	-	BURPS1106A_0143	-	hypothetical protein
144	 64.95	0	138530..139111	-	193	126454811	-	BURPS1106A_0144	-	hypothetical protein
145	 65.29	0	139035..140048	+	337	126451629	-	BURPS1106A_0145	-	PBSX family phage portal protein
146	 64.99	0	140092..140448	-	118	126452496	-	BURPS1106A_0146	-	addiction module antidote protein
147	 57.70	-1	141073..141897	-	274	126453891	-	BURPS1106A_0147	-	hypothetical protein
148	 62.47	0	142499..142903	+	134	126454726	-	BURPS1106A_0149	-	thioesterase family protein
149	 69.66	0	142941..143810	+	289	126451606	-	BURPS1106A_0150	-	patatin family phospholipase
150	 82.11	+2	143834..143956	+	40	126454609	-	BURPS1106A_0152	-	hypothetical protein
151	 66.86	0	143931..144947	-	338	126452528	gyaR	BURPS1106A_0151	-	glyoxylate reductase
152	 67.23	0	145386..146441	+	351	126451470	-	BURPS1106A_0153	-	LysR family transcriptional regulator
153	 78.63	+2	146553..146669	-	38	126452814	-	BURPS1106A_0154	-	hypothetical protein
154	 64.46	0	146666..149386	-	906	126453699	topB	BURPS1106A_0155	-	DNA topoisomerase III
155	 65.32	0	149486..149857	-	123	126454243	-	BURPS1106A_0156	-	hypothetical protein
156	 72.95	0	149917..151221	-	434	126455418	dprA	BURPS1106A_0157	-	DNA protecting protein DprA
157	 67.50	0	151218..151337	-	39	126452019	-	BURPS1106A_0158	-	hypothetical protein
158	 61.48	-1	151300..151839	+	179	126453149	def	BURPS1106A_0159	-	polypeptide deformylase
159	 72.76	0	151871..152854	+	327	126454119	fmt	BURPS1106A_0160	-	methionyl-tRNA formyltransferase
160	 67.48	0	152870..152992	-	40	126455012	-	BURPS1106A_0161	-	hypothetical protein
161	 66.82	0	152975..153610	+	211	126451862	-	BURPS1106A_0162	-	LysE family translocator protein
162	 65.15	0	153720..154577	+	285	126452704	-	BURPS1106A_0163	-	heat shock protein HtpX
163	 71.70	0	154758..155174	+	138	126454661	-	BURPS1106A_0164	-	acetate permease
164	 72.48	0	155171..156580	+	469	126451630	sun	BURPS1106A_0165	-	ribosomal RNA small subunit methyltransferase B
165	 64.30	0	156577..157167	+	196	126452437	-	BURPS1106A_0166	-	hypothetical protein
166	 66.75	0	157169..159577	+	802	126453271	-	BURPS1106A_0167	-	sensor histidine kinase
167	 69.01	0	159578..160261	+	227	126453538	-	BURPS1106A_0168	-	Fis family DNA-binding response regulator
168	 68.47	0	160528..160749	+	73	126454381	-	BURPS1106A_0170	-	hypothetical protein
169	 66.39	0	160730..161464	+	244	126455276	-	BURPS1106A_0171	-	exsB protein
170	 66.35	0	161558..162190	+	210	126452181	-	BURPS1106A_0172	-	hypothetical protein
67.62	MEAN

5.36	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.