IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1129	 67.38	0	1116069..1116209	+	46	126452240	-	BURPS1106A_1135	-	hypothetical protein
1130	 63.86	0	1116424..1116708	+	94	126452637	-	BURPS1106A_1136	-	hypothetical protein
1131	 64.36	0	1116719..1117021	+	100	126453564	-	BURPS1106A_1137	-	hypothetical protein
1132	 64.35	0	1117021..1117236	+	71	126454943	-	BURPS1106A_1138	-	hypothetical protein
1133	 58.80	-1	1117750..1118016	+	88	126451819	infA	BURPS1106A_1139	-	translation initiation factor IF-1
1134	 64.94	0	1118477..1119403	-	308	126452097	-	BURPS1106A_1140	-	alpha/beta fold family hydrolase
1135	 65.85	0	1119424..1121010	-	528	126452959	-	BURPS1106A_1141	-	hypothetical protein
1136	 58.33	-1	1121456..1121659	-	67	126454515	-	BURPS1106A_1142	-	rubredoxin
1137	 66.67	0	1122032..1122439	+	135	126453665	-	BURPS1106A_1143	-	hypothetical protein
1138	 68.94	0	1122571..1124553	+	660	126452112	-	BURPS1106A_1144	-	ABC transporter, ATP-binding protein
1139	 66.87	0	1124759..1126741	+	660	126455235	parE	BURPS1106A_1145	-	DNA topoisomerase IV subunit B
1140	 68.87	0	1126800..1129118	+	772	126454891	parC	BURPS1106A_1146	-	DNA topoisomerase IV subunit A
1141	 70.77	0	1129224..1129418	+	64	126452600	-	BURPS1106A_1148	-	hypothetical protein
1142	 68.12	0	1129390..1129665	-	91	126453985	-	BURPS1106A_1147	-	hypothetical protein
1143	 67.97	0	1129811..1130269	+	152	126451884	-	BURPS1106A_1149	-	hypothetical protein
1144	 71.19	0	1130431..1131315	-	294	126453249	-	BURPS1106A_1150	-	LysR family transcriptional regulator
1145	 67.11	0	1131421..1131876	+	151	126452360	-	BURPS1106A_1151	-	hypothetical protein
1146	 66.67	0	1132085..1133047	-	320	126451850	-	BURPS1106A_1152	-	LysR family transcriptional regulator
1147	 61.62	-1	1133080..1133277	-	65	126454580	-	BURPS1106A_1153	-	200 kDa antigen p200, putative
1148	 70.47	0	1133263..1134576	+	437	126453000	-	BURPS1106A_1154	-	major facilitator transporter
1149	 73.56	+1	1134578..1135840	+	420	126452829	amaB	BURPS1106A_1155	-	allantoate amidohydrolase
1150	 64.86	0	1135854..1136129	+	91	126455263	-	BURPS1106A_1156	-	hypothetical protein
1151	 69.01	0	1136172..1137197	+	341	126454260	aphA	BURPS1106A_1157	-	acetylpolyamine aminohydrolase
1152	 69.58	0	1137217..1137456	-	79	126455380	-	BURPS1106A_1158	-	hypothetical protein
1153	 71.19	0	1137585..1138778	-	397	126454264	-	BURPS1106A_1159	-	chromate transporter
1154	 66.45	0	1138925..1141243	-	772	126452559	-	BURPS1106A_1160	-	diguanylate cyclase/cyclic diguanylate phosphodiesterase
1155	 75.44	+1	1141505..1142404	-	299	126452320	-	BURPS1106A_1161	-	PhzF family phenazine biosynthesis protein
1156	 65.36	0	1142409..1142867	-	152	126454512	-	BURPS1106A_1162	-	putative endoribonuclease L-PSP
1157	 69.04	0	1142932..1144113	-	393	126455457	-	BURPS1106A_1163	-	aminotransferase, class I/II
1158	 73.49	+1	1144174..1145082	-	302	126452292	-	BURPS1106A_1164	-	integral membrane protein
1159	 73.68	+1	1145176..1145859	-	227	126453174	-	BURPS1106A_1165	-	hypothetical protein
1160	 69.90	0	1146010..1147464	+	484	126455072	-	BURPS1106A_1166	-	GntR family transcriptional regulator
1161	 64.35	0	1147600..1149498	+	632	126451945	hsp90	BURPS1106A_1167	-	heat shock protein 90
1162	 75.79	+1	1149498..1150100	+	200	126452801	ubiC	BURPS1106A_1168	-	chorismate--pyruvate lyase
1163	 68.13	0	1150100..1150576	+	158	126453694	-	BURPS1106A_1169	-	hypothetical protein
1164	 68.42	0	1150573..1151769	+	398	126451669	-	BURPS1106A_1170	-	hypothetical protein
1165	 61.25	-1	1151961..1152200	+	79	126452521	-	BURPS1106A_1171	-	hypothetical protein
1166	 65.96	0	1152197..1153747	+	516	126453342	-	BURPS1106A_1172	-	solute/sodium symporter (SSS) family protein
1167	 62.76	0	1153875..1154309	-	144	126452221	-	BURPS1106A_1173	-	VOC metalloenzyme family protein
1168	 64.78	0	1154675..1155628	-	317	126454015	tal	BURPS1106A_1174	-	transaldolase B
1169	 74.60	+1	1155739..1155990	-	83	126451857	-	BURPS1106A_1175	-	hypothetical protein
1170	 71.02	0	1156030..1157247	-	405	126454753	-	BURPS1106A_1176	-	benzoate transporter
1171	 65.39	0	1157331..1158506	-	391	126453530	-	BURPS1106A_1177	-	hypothetical protein
1172	 64.65	0	1158691..1159533	-	280	126453485	-	BURPS1106A_1178	-	AAA family ATPase
1173	 62.78	0	1159767..1160126	+	119	126453232	-	BURPS1106A_1179	-	cytochrome c family protein
1174	 65.04	0	1160167..1160535	+	122	126452108	-	BURPS1106A_1180	-	cytochrome c family protein
1175	 67.21	0	1161024..1161575	-	183	126454962	-	BURPS1106A_1181	-	hypothetical protein
1176	 74.04	+1	1161997..1163067	+	356	126455027	-	BURPS1106A_1182	-	hypothetical protein
1177	 65.43	0	1163200..1163844	-	214	126451469	nth	BURPS1106A_1183	-	endonuclease III
1178	 73.42	+1	1163849..1164721	-	290	126453295	-	BURPS1106A_1184	-	ferredoxin
1179	 62.09	-1	1164979..1165611	+	210	126451522	-	BURPS1106A_1185	-	TetR family transcriptional regulator
1180	 66.26	0	1165754..1167220	-	488	126452644	phaZ	BURPS1106A_1186	-	intracellular poly[D(-)-3-hydroxybutyrate] (PHB) depolymerase
1181	 65.87	0	1167158..1167283	+	41	126453609	-	BURPS1106A_1187	-	hypothetical protein
1182	 57.02	-1	1167285..1167398	-	37	126454902	-	BURPS1106A_1188	-	hypothetical protein
1183	 70.10	0	1167440..1169272	-	610	126455215	-	BURPS1106A_1189	-	glycosy hydrolase family protein
1184	 66.67	0	1169259..1169375	+	38	126451613	-	BURPS1106A_1190	-	hypothetical protein
1185	 69.05	0	1169509..1170684	+	391	126453030	-	BURPS1106A_1191	-	hypothetical protein
1186	 74.07	+1	1170707..1170841	+	44	126453781	-	BURPS1106A_1192	-	hypothetical protein
1187	 74.39	+1	1170987..1176542	-	1851	126453240	ftsK	BURPS1106A_1193	-	DNA translocase FtsK
1188	 71.40	0	1176714..1177262	-	182	126454278	-	BURPS1106A_1194	-	hypothetical protein
1189	 73.33	+1	1177461..1177730	+	89	126454939	-	BURPS1106A_1195	-	hypothetical protein
1190	 71.93	0	1177996..1179210	+	404	126452032	purT	BURPS1106A_1196	-	phosphoribosylglycinamide formyltransferase 2
1191	 71.52	0	1179370..1179534	+	54	126451713	-	BURPS1106A_1197	-	putative lipoprotein
1192	 72.61	0	1179593..1179979	+	128	126452816	-	BURPS1106A_1198	-	hypothetical protein
1193	 75.31	+1	1179999..1180160	+	53	126455436	-	BURPS1106A_1199	-	hypothetical protein
1194	 74.53	+1	1180294..1180611	+	105	126454546	-	BURPS1106A_1200	-	hypothetical protein
1195	 68.94	0	1180625..1182073	+	482	126454058	-	BURPS1106A_1201	-	DEAD/DEAH box helicase
1196	 62.67	0	1182400..1182549	-	49	126451765	-	BURPS1106A_1202	-	hypothetical protein
1197	 74.16	+1	1182573..1183466	-	297	126455073	gluQ	BURPS1106A_1203	-	glutamyl-Q tRNA(Asp) synthetase
1198	 67.44	0	1183510..1184409	-	299	126454203	-	BURPS1106A_1204	-	hypothetical protein
1199	 78.95	+2	1184578..1184862	+	94	126454089	-	BURPS1106A_1205	-	Fis family transcriptional regulator
1200	 66.87	0	1185049..1188573	+	1174	126453191	dnaE	BURPS1106A_1206	-	DNA polymerase III subunit alpha
1201	 65.22	0	1188679..1190403	+	574	126454551	msbA	BURPS1106A_1207	-	lipid A export ATP-binding/permease protein MsbA
1202	 68.98	0	1190457..1191539	+	360	126453690	lgtG	BURPS1106A_1208	-	lipooligosaccharide glycosyl transferase G
1203	 69.81	0	1191821..1192966	+	381	126451848	-	BURPS1106A_1209	-	heptosyltransferase
1204	 67.44	0	1192963..1194261	+	432	126455061	-	BURPS1106A_1210	-	hypothetical protein
1205	 70.31	0	1194258..1195520	+	420	126454176	-	BURPS1106A_1211	-	glycosyl transferase, group 1 family protein
1206	 68.88	0	1195607..1196779	+	390	126452914	-	BURPS1106A_1212	-	putative lipopolysaccharide heptosyltransferase III
1207	 65.49	0	1197046..1197810	-	254	126454929	-	BURPS1106A_1213	-	glycosyl transferase, group 2 family protein
1208	 70.34	0	1198268..1198648	+	126	126453775	-	BURPS1106A_1214	-	hypothetical protein
1209	 67.00	0	1198929..1199522	-	197	126452639	-	BURPS1106A_1215	-	hypothetical protein
1210	 71.10	0	1199772..1201034	-	420	126451518	-	BURPS1106A_1216	-	major facilitator transporter
1211	 75.23	+1	1201031..1202011	-	326	126451841	-	BURPS1106A_1217	-	putative lipoprotein
1212	 66.67	0	1202345..1202461	-	38	126452982	-	BURPS1106A_1218	-	hypothetical protein
1213	 64.02	0	1202715..1203167	-	150	126454095	-	BURPS1106A_1219	-	carboxymuconolactone decarboxylase family protein
1214	 75.62	+1	1203213..1203659	-	148	126455220	-	BURPS1106A_1220	-	hypothetical protein
1215	 69.13	0	1203656..1204588	-	310	126455217	-	BURPS1106A_1221	-	RNA polymerase sigma-70 factor
1216	 67.36	0	1204727..1205161	-	144	126453916	-	BURPS1106A_1222	-	hypothetical protein
1217	 72.65	0	1205187..1205303	+	38	126455186	-	BURPS1106A_1224	-	hypothetical protein
1218	 64.97	0	1205297..1205590	-	97	126452009	-	BURPS1106A_1223	-	hypothetical protein
1219	 73.46	+1	1206007..1206315	-	102	126455339	-	BURPS1106A_1225	-	hypothetical protein
1220	 71.56	0	1206314..1206640	+	108	126454423	-	BURPS1106A_1226	-	hypothetical protein
1221	 76.00	+1	1206719..1206868	-	49	126452812	-	BURPS1106A_1227	-	hypothetical protein
1222	 69.77	0	1206990..1207118	-	42	126452180	-	BURPS1106A_1228	-	hypothetical protein
1223	 70.01	0	1207789..1208505	+	238	126451452	-	BURPS1106A_1229	-	putative phospholipase C accessory protein
1224	 65.51	0	1208579..1209964	+	461	126454856	-	BURPS1106A_1230	-	hypothetical protein
1225	 69.11	0	1209992..1211380	-	462	126453470	yicE	BURPS1106A_1231	-	xanthine permease
1226	 69.42	0	1211345..1211635	+	96	126453267	-	BURPS1106A_1232	-	hypothetical protein
1227	 65.71	0	1211698..1213164	-	488	126451783	-	BURPS1106A_1233	-	ribonuclease
1228	 73.97	+1	1213173..1213802	-	209	126455201	maf	BURPS1106A_1234	-	Maf-like protein
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.