IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1057	 73.89	+1	1040597..1041136	+	179	126454894	sodC	BURPS1106A_1062	-	copper/zinc superoxide dismutase
1058	 61.23	-1	1041240..1041809	+	189	126451751	dcd	BURPS1106A_1063	-	deoxycytidine triphosphate deaminase
1059	 64.91	0	1041912..1044191	+	759	126454145	-	BURPS1106A_1064	-	Orn/Lys/Arg decarboxylase
1060	 73.72	+1	1044194..1044916	+	240	126455025	-	BURPS1106A_1065	-	hypothetical protein
1061	 73.63	+1	1045050..1045724	-	224	126455379	-	BURPS1106A_1066	-	haloacid dehalogenase, IA family protein
1062	 68.23	0	1045757..1047166	-	469	126452237	argH	BURPS1106A_1067	-	argininosuccinate lyase
1063	 81.20	+2	1047223..1047339	-	38	126453225	-	BURPS1106A_1068	-	hypothetical protein
1064	 71.75	0	1047336..1049636	-	766	126453579	-	BURPS1106A_1069	-	fimbrial usher protein
1065	 73.00	+1	1050433..1051143	-	236	126451911	-	BURPS1106A_1070	-	putative pilus assembly chaperone
1066	 64.55	0	1051151..1051669	-	172	126452988	-	BURPS1106A_1071	-	pilus biogenesis protein
1067	 66.76	0	1052015..1053052	+	345	126452262	-	BURPS1106A_1072	-	putative lipoprotein
1068	 72.43	0	1053225..1054040	-	271	126454644	-	BURPS1106A_1073	-	hypothetical protein
1069	 72.09	0	1054223..1054978	+	251	126452650	-	BURPS1106A_1074	-	UbiE/COQ5 family methlytransferase
1070	 70.21	0	1055347..1058421	-	1024	126451534	ppc	BURPS1106A_1075	-	phosphoenolpyruvate carboxylase
1071	 72.22	0	1058444..1058623	+	59	126454870	-	BURPS1106A_1076	-	hypothetical protein
1072	 73.03	+1	1058658..1059647	+	329	126455102	hemC	BURPS1106A_1077	-	porphobilinogen deaminase
1073	 70.51	0	1059647..1061626	+	659	126453804	-	BURPS1106A_1078	-	bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase
1074	 71.03	0	1061631..1062821	+	396	126451474	-	BURPS1106A_1080	-	putative hemY protein
1075	 74.21	+1	1062785..1062943	-	52	126454845	-	BURPS1106A_1079	-	hypothetical protein
1076	 67.66	0	1062990..1064297	-	435	126454686	-	BURPS1106A_1081	-	anion:cation symporter (ACS) family protein
1077	 70.09	0	1064336..1065094	-	252	126453562	tsaC	BURPS1106A_1082	-	3-ketoacyl-(acyl-carrier-protein) reductase
1078	 72.92	0	1065183..1066622	-	479	126452887	-	BURPS1106A_1083	-	aldehyde dehydrogenase (NAD) family protein
1079	 63.26	0	1066783..1067310	+	175	126451761	ppa	BURPS1106A_1084	-	inorganic pyrophosphatase
1080	 73.06	+1	1067391..1068203	+	270	126452404	-	BURPS1106A_1085	-	LigA
1081	 69.30	0	1068312..1068425	+	37	126455344	-	BURPS1106A_1086	-	hypothetical protein
1082	 72.67	0	1068496..1069161	+	221	126454730	-	BURPS1106A_1087	-	beta-D-glucosidase
1083	 69.76	0	1069313..1070638	-	441	126453850	-	BURPS1106A_1088	-	hypothetical protein
1084	 69.66	0	1070612..1072312	+	566	126451553	nadE	BURPS1106A_1089	-	NAD synthetase
1085	 62.83	0	1072373..1072711	+	112	126454900	glnB	BURPS1106A_1090	-	nitrogen regulatory protein P-II
1086	 65.20	0	1073180..1074271	-	363	126453231	-	BURPS1106A_1091	-	putative outer membrane porin
1087	 65.62	0	1075163..1075930	-	255	126454351	hisP	BURPS1106A_1092	-	histidine ABC transporter, ATP-binding protein
1088	 64.15	0	1075965..1076678	-	237	126454024	hisM	BURPS1106A_1093	-	histidine ABC transporter, permease protein HisM
1089	 63.62	0	1076675..1077364	-	229	126455408	hisQ	BURPS1106A_1094	-	histidine ABC transporter, permease protein HisQ
1090	 66.02	0	1077575..1078351	-	258	126452224	hisJ	BURPS1106A_1095	-	histidine ABC transporter, periplasmic histidine-binding protein
1091	 71.83	0	1078422..1078673	-	83	126453630	-	BURPS1106A_1096	-	hypothetical protein
1092	 72.43	0	1078734..1079444	+	236	126453627	-	BURPS1106A_1097	-	cupin domain-containing protein
1093	 67.77	0	1079792..1080337	-	181	126455318	-	BURPS1106A_1098	-	hypothetical protein
1094	 69.42	0	1080579..1081304	+	241	126452418	-	BURPS1106A_1099	-	DNA-binding response regulator
1095	 72.83	0	1081288..1082601	+	437	126453072	-	BURPS1106A_1100	-	sensor histidine kinase
1096	 58.80	-1	1082675..1082941	-	88	126451840	-	BURPS1106A_1101	-	hypothetical protein
1097	 71.74	0	1083068..1083205	-	45	126453175	-	BURPS1106A_1102	-	hypothetical protein
1098	 66.04	0	1083438..1085195	+	585	126453617	-	BURPS1106A_1103	-	ABC transporter, permease protein
1099	 68.83	0	1085249..1086589	+	446	126454734	-	BURPS1106A_1104	-	ABC transporter, ATP-binding protein
1100	 75.31	+1	1086756..1086917	-	53	126455376	-	BURPS1106A_1105	-	hypothetical protein
1101	 73.57	+1	1086974..1087480	-	168	126452446	-	BURPS1106A_1106	-	putative lipoprotein
1102	 69.66	0	1087477..1088145	-	222	126453212	-	BURPS1106A_1107	-	hypothetical protein
1103	 70.71	0	1088317..1088514	+	65	126454138	-	BURPS1106A_1108	-	hypothetical protein
1104	 67.44	0	1088647..1090065	+	472	126453612	otsA	BURPS1106A_1109	-	alpha,alpha-trehalose-phosphate synthase (UDP-forming)
1105	 72.31	0	1090058..1090660	+	200	126454137	-	BURPS1106A_1110	-	hypothetical protein
1106	 71.08	0	1090833..1091444	-	203	126454424	-	BURPS1106A_1111	-	hypothetical protein
1107	 62.50	0	1092277..1093380	-	367	126455313	-	BURPS1106A_1112	-	transposase, IS4
1108	 71.47	0	1093530..1094903	-	457	126452483	-	BURPS1106A_1113	-	EmrB/QacA family drug resistance transporter
1109	 66.47	0	1095027..1095539	-	170	126454401	-	BURPS1106A_1114	-	phosphatidylethanolamine-binding protein
1110	 69.29	0	1096114..1096494	-	126	126454736	-	BURPS1106A_1115	-	hypothetical protein
1111	 69.26	0	1096652..1096921	+	89	126451462	-	BURPS1106A_1116	-	hypothetical protein
1112	 66.67	0	1096918..1097052	+	44	126455375	-	BURPS1106A_1117	-	hypothetical protein
1113	 69.55	0	1097073..1097315	+	80	126451512	-	BURPS1106A_1118	-	hypothetical protein
1114	 70.37	0	1097312..1097446	+	44	126454255	-	BURPS1106A_1120	-	hypothetical protein
1115	 65.28	0	1097416..1097559	-	47	126453096	-	BURPS1106A_1119	-	hypothetical protein
1116	 72.18	0	1097528..1097908	-	126	126453260	-	BURPS1106A_1121	-	putative lipoprotein
1117	 54.81	-2	1097950..1098084	+	44	126453647	-	BURPS1106A_1122	-	hypothetical protein
1118	 66.85	0	1098081..1098620	+	179	126454622	eco	BURPS1106A_1123	-	ecotin precursor
1119	 69.83	0	1098718..1099854	-	378	126451732	-	BURPS1106A_1124	-	D-alanyl-D-alanine carboxypeptidase family protein
1120	 65.33	0	1100095..1100319	-	74	126455391	-	BURPS1106A_1125	-	hypothetical protein
1121	 71.54	0	1100336..1100458	-	40	126451964	-	BURPS1106A_1126	-	hypothetical protein
1122	 63.73	0	1100776..1101252	+	158	126453123	-	BURPS1106A_1127	-	hypothetical protein
1123	 74.24	+1	1101265..1101396	+	43	126453732	-	BURPS1106A_1128	-	hypothetical protein
1124	 61.49	-1	1102888..1112313	+	3141	126454898	-	BURPS1106A_1129	-	cell surface protein
1125	 43.33	-2	1112436..1112675	+	79	126451625	-	BURPS1106A_1130	-	hypothetical protein
1126	 65.79	0	1112960..1113301	-	113	126455074	-	BURPS1106A_1131	-	hypothetical protein
1127	 61.98	-1	1112987..1114693	+	568	126451960	-	BURPS1106A_1132	-	hemolysin activation/secretion protein
1128	 59.89	-1	1115629..1115982	-	117	126455029	-	BURPS1106A_1134	-	integrase catalytic subunit
1129	 67.38	0	1116069..1116209	+	46	126452240	-	BURPS1106A_1135	-	hypothetical protein
1130	 63.86	0	1116424..1116708	+	94	126452637	-	BURPS1106A_1136	-	hypothetical protein
1131	 64.36	0	1116719..1117021	+	100	126453564	-	BURPS1106A_1137	-	hypothetical protein
1132	 64.35	0	1117021..1117236	+	71	126454943	-	BURPS1106A_1138	-	hypothetical protein
1133	 58.80	-1	1117750..1118016	+	88	126451819	infA	BURPS1106A_1139	-	translation initiation factor IF-1
1134	 64.94	0	1118477..1119403	-	308	126452097	-	BURPS1106A_1140	-	alpha/beta fold family hydrolase
1135	 65.85	0	1119424..1121010	-	528	126452959	-	BURPS1106A_1141	-	hypothetical protein
1136	 58.33	-1	1121456..1121659	-	67	126454515	-	BURPS1106A_1142	-	rubredoxin
1137	 66.67	0	1122032..1122439	+	135	126453665	-	BURPS1106A_1143	-	hypothetical protein
1138	 68.94	0	1122571..1124553	+	660	126452112	-	BURPS1106A_1144	-	ABC transporter, ATP-binding protein
1139	 66.87	0	1124759..1126741	+	660	126455235	parE	BURPS1106A_1145	-	DNA topoisomerase IV subunit B
1140	 68.87	0	1126800..1129118	+	772	126454891	parC	BURPS1106A_1146	-	DNA topoisomerase IV subunit A
1141	 70.77	0	1129224..1129418	+	64	126452600	-	BURPS1106A_1148	-	hypothetical protein
1142	 68.12	0	1129390..1129665	-	91	126453985	-	BURPS1106A_1147	-	hypothetical protein
1143	 67.97	0	1129811..1130269	+	152	126451884	-	BURPS1106A_1149	-	hypothetical protein
1144	 71.19	0	1130431..1131315	-	294	126453249	-	BURPS1106A_1150	-	LysR family transcriptional regulator
1145	 67.11	0	1131421..1131876	+	151	126452360	-	BURPS1106A_1151	-	hypothetical protein
1146	 66.67	0	1132085..1133047	-	320	126451850	-	BURPS1106A_1152	-	LysR family transcriptional regulator
1147	 61.62	-1	1133080..1133277	-	65	126454580	-	BURPS1106A_1153	-	200 kDa antigen p200, putative
1148	 70.47	0	1133263..1134576	+	437	126453000	-	BURPS1106A_1154	-	major facilitator transporter
1149	 73.56	+1	1134578..1135840	+	420	126452829	amaB	BURPS1106A_1155	-	allantoate amidohydrolase
1150	 64.86	0	1135854..1136129	+	91	126455263	-	BURPS1106A_1156	-	hypothetical protein
1151	 69.01	0	1136172..1137197	+	341	126454260	aphA	BURPS1106A_1157	-	acetylpolyamine aminohydrolase
1152	 69.58	0	1137217..1137456	-	79	126455380	-	BURPS1106A_1158	-	hypothetical protein
1153	 71.19	0	1137585..1138778	-	397	126454264	-	BURPS1106A_1159	-	chromate transporter
1154	 66.45	0	1138925..1141243	-	772	126452559	-	BURPS1106A_1160	-	diguanylate cyclase/cyclic diguanylate phosphodiesterase
1155	 75.44	+1	1141505..1142404	-	299	126452320	-	BURPS1106A_1161	-	PhzF family phenazine biosynthesis protein
1156	 65.36	0	1142409..1142867	-	152	126454512	-	BURPS1106A_1162	-	putative endoribonuclease L-PSP
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.