IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.62 STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
955	 62.06	-1	940131..941390	+	419	126453346	icd	BURPS1106A_0960	-	isocitrate dehydrogenase
956	 64.48	0	941363..941545	-	60	126452842	-	BURPS1106A_0959	-	hypothetical protein
957	 70.95	0	941558..943168	+	536	126453660	-	BURPS1106A_0961	-	multicopper oxidase family protein
958	 53.43	-2	943298..943501	-	67	126453970	-	BURPS1106A_0962	-	cold shock protein
959	 56.51	-2	944034..944348	+	104	126455350	clpS	BURPS1106A_0963	-	ATP-dependent Clp protease adaptor protein ClpS
960	 64.93	0	944345..946645	+	766	126452761	clpA	BURPS1106A_0964	-	ATP-dependent Clp protease ATP-binding subunit ClpA
961	 66.74	0	946745..948121	+	458	126453093	-	BURPS1106A_0965	-	amino acid permease
962	 71.77	0	948194..948937	+	247	126453919	-	BURPS1106A_0966	-	hypothetical protein
963	 65.64	0	949102..949884	+	260	126454774	-	BURPS1106A_0967	-	hypothetical protein
964	 68.90	0	949973..950419	-	148	126451592	dut	BURPS1106A_0968	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
965	 69.47	0	950483..951694	-	403	126452551	coaBC	BURPS1106A_0969	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
966	 66.47	0	951756..952256	-	166	126453443	lspA	BURPS1106A_0970	-	signal peptidase II
967	 66.77	0	952256..955093	-	945	126452873	ileS	BURPS1106A_0971	-	isoleucyl-tRNA synthetase
968	 71.30	0	955205..956197	-	330	126452288	bimA	BURPS1106A_0972	-	bifunctional riboflavin kinase/FMN adenylyltransferase
969	 69.53	0	956322..956984	+	220	126454710	purN	BURPS1106A_0973	-	phosphoribosylglycinamide formyltransferase
970	 70.70	0	956981..958243	+	420	126454034	sun	BURPS1106A_0974	-	rRNA small subunit methyltransferase B
971	 70.66	0	958255..959607	+	450	126452978	-	BURPS1106A_0975	-	small conductance mechanosensitive ion channel (MscS) family protein
972	 63.83	0	959804..961000	+	398	126452903	-	BURPS1106A_0976	-	fatty acid desaturase family protein
973	 63.77	0	961037..961174	-	45	126451803	-	BURPS1106A_0977	-	hypothetical protein
974	 67.55	0	961169..962305	+	378	126451762	nadA	BURPS1106A_0978	-	quinolinate synthetase
975	 70.06	0	962302..963186	+	294	126454043	nadC	BURPS1106A_0979	-	nicotinate-nucleotide pyrophosphorylase
976	 75.80	+1	963188..963406	+	72	126454503	-	BURPS1106A_0981	-	hypothetical protein
977	 67.54	0	963378..965090	-	570	126454473	nadB	BURPS1106A_0980	-	L-aspartate oxidase
978	 53.57	-2	965147..965314	-	55	126453616	rpmG	BURPS1106A_0982	-	50S ribosomal protein L33
979	 60.68	-1	965332..965565	-	77	126452424	rpmB	BURPS1106A_0983	-	50S ribosomal protein L28
980	 74.07	+1	965859..966695	-	278	126455030	radC	BURPS1106A_0984	-	DNA repair protein RadC
981	 65.13	0	966834..967289	+	151	126455033	fkpB	BURPS1106A_0985	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
982	 68.20	0	967292..968272	+	326	126454143	ispH	BURPS1106A_0986	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
983	 62.50	0	968418..969521	+	367	126452273	-	BURPS1106A_0987	-	transposase, IS4
984	 73.21	+1	969918..970406	+	162	126451663	-	BURPS1106A_0988	-	hypothetical protein
985	 64.77	0	970629..971579	+	316	126453328	-	BURPS1106A_0989	-	hydrophobic amino acid ABC transporter permease/ATP-binding protein
986	 66.24	0	971590..972759	+	389	126454057	-	BURPS1106A_0990	-	hydrophobic amino acid ABC transporter permease/ATP-binding protein
987	 64.73	0	972822..973595	+	257	126453383	-	BURPS1106A_0991	-	hydrophobic amino acid ABC transporter ATP-binding protein
988	 64.71	0	973595..974311	+	238	126452269	-	BURPS1106A_0992	-	hydrophobic amino acid ABC transporter ATP-binding protein
989	 69.60	0	974356..974628	+	90	126452244	-	BURPS1106A_0993	-	hypothetical protein
990	 65.17	0	974625..975293	+	222	126454715	-	BURPS1106A_0994	-	hypothetical protein
991	 72.61	0	975466..975936	-	156	126453563	-	BURPS1106A_0995	-	putative acetyltransferase
992	 66.50	0	975941..977125	-	394	126452494	argD	BURPS1106A_0996	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
993	 67.05	0	977402..978433	-	343	126454941	-	BURPS1106A_0997	-	CDP-6-deoxy-delta-3,4-glucoseen reductase
994	 71.94	0	978462..979541	+	359	126452148	-	BURPS1106A_0999	-	NAD-dependent epimerase/dehydratase family protein
995	 58.85	-1	979534..979725	-	63	126453803	-	BURPS1106A_0998	-	hypothetical protein
996	 69.16	0	979839..980561	-	240	126454957	-	BURPS1106A_1000	-	RNA pseudouridine synthase family protein
997	 70.16	0	980703..981074	+	123	126454378	-	BURPS1106A_1001	-	putative copper resistance protein CopC
998	 68.64	0	981086..982048	-	320	126453248	-	BURPS1106A_1002	-	LysR family transcriptional regulator
999	 72.69	0	982250..983146	-	298	126452612	-	BURPS1106A_1003	-	LysR family transcriptional regulator
1000	 72.46	0	983268..984164	+	298	126451500	-	BURPS1106A_1004	-	alpha/beta fold family hydrolase
1001	 69.71	0	984418..985107	-	229	126454115	-	BURPS1106A_1005	-	MOSC domain-containing protein
1002	 70.35	0	985122..986018	-	298	126454975	-	BURPS1106A_1006	-	putative dihydrodipicolinate synthase
1003	 68.45	0	986100..986882	-	260	126452376	-	BURPS1106A_1007	-	hypothetical protein
1004	 63.65	0	987014..987577	+	187	126453277	-	BURPS1106A_1008	-	DNA-binding protein
1005	 70.65	0	987676..987876	+	66	126453597	-	BURPS1106A_1009	-	hypothetical protein
1006	 69.49	0	988363..988539	-	58	126452127	-	BURPS1106A_1011	-	hypothetical protein
1007	 64.54	0	988698..989639	-	313	126453673	cysB	BURPS1106A_1012	-	transcriptional regulator CysB-like protein
1008	 65.60	0	989859..991538	+	559	126454547	-	BURPS1106A_1013	-	sulfite reductase, ferredoxin subunit
1009	 70.90	0	991563..992105	+	180	126452080	-	BURPS1106A_1014	-	hypothetical protein
1010	 69.73	0	992102..992851	+	249	126453333	-	BURPS1106A_1015	-	phosphoadenosine phosphosulfate reductase
1011	 68.22	0	992932..993897	+	321	126453969	cysD	BURPS1106A_1016	-	sulfate adenylyltransferase subunit 2
1012	 66.82	0	993920..995236	+	438	126455060	cysN	BURPS1106A_1017	-	sulfate adenylyltransferase, large subunit
1013	 73.39	+1	995296..996069	+	257	126451772	cobA	BURPS1106A_1018	-	uroporphyrin-III C-methyltransferase
1014	 71.83	0	996280..996666	-	128	126452902	-	BURPS1106A_1019	-	putative sirohydrochlorin cobaltochelatase CbiX
1015	 63.63	0	996698..997849	-	383	126453481	-	BURPS1106A_1020	-	hypothetical protein
1016	 64.48	0	997853..998950	-	365	126453581	-	BURPS1106A_1021	-	hypothetical protein
1017	 67.46	0	999071..1000582	+	503	126452701	pepA	BURPS1106A_1022	-	leucyl aminopeptidase
1018	 68.82	0	1000626..1001042	+	138	126454054	holC	BURPS1106A_1023	-	DNA polymerase III subunit chi
1019	 76.17	+1	1001206..1001784	+	192	126455401	-	BURPS1106A_1024	-	hypothetical protein
1020	 64.81	0	1001942..1002265	-	107	126452021	-	BURPS1106A_1025	-	cytochrome c family protein
1021	 66.67	0	1002309..1002431	-	40	126453159	-	BURPS1106A_1026	-	hypothetical protein
1022	 67.44	0	1002479..1004152	-	557	126452792	ilvD	BURPS1106A_1027	-	dihydroxy-acid dehydratase
1023	 74.30	+1	1004330..1005325	+	331	126453441	ilvR	BURPS1106A_1028	-	isoleucine biosynthesis transcriptional activator IlvR
1024	 74.47	+1	1005288..1005428	+	46	126454600	-	BURPS1106A_1029	-	hypothetical protein
1025	 66.78	0	1005432..1006322	+	296	126453449	lgt	BURPS1106A_1030	-	prolipoprotein diacylglyceryl transferase
1026	 69.24	0	1006682..1007419	-	245	126453210	-	BURPS1106A_1031	-	hypothetical protein
1027	 66.45	0	1007618..1008079	-	153	126452025	-	BURPS1106A_1032	-	hypothetical protein
1028	 64.13	0	1008419..1008733	-	104	126455296	-	BURPS1106A_1033	-	hypothetical protein
1029	 62.68	0	1008730..1009080	-	116	126454620	-	BURPS1106A_1034	-	hypothetical protein
1030	 68.61	0	1009619..1011676	+	685	126453524	-	BURPS1106A_1035	-	putative TonB-dependent vitamin B12 receptor BtuB
1031	 76.29	+1	1011728..1012756	+	342	126452870	-	BURPS1106A_1036	-	cobalamin ABC transporter, permease protein
1032	 73.95	+1	1012753..1014675	+	640	126451756	-	BURPS1106A_1037	-	cobalamin ABC transporter, ATP-binding protein
1033	 73.25	+1	1014682..1015440	+	252	126452810	cobS	BURPS1106A_1038	-	cobalamin synthase
1034	 74.83	+1	1015425..1016024	+	199	126451705	cobC	BURPS1106A_1039	-	alpha-ribazole phosphatase
1035	 62.84	0	1016167..1017003	-	278	126455124	-	BURPS1106A_1040	-	hypothetical protein
1036	 72.45	0	1017169..1018101	-	310	126455153	btuF	BURPS1106A_1041	-	cobalamin ABC transporter, periplasmic cobalamin-binding protein
1037	 75.97	+1	1018107..1019159	-	350	126454618	cobD	BURPS1106A_1042	-	putative threonine-phosphate decarboxylase
1038	 77.25	+1	1019152..1020096	-	314	126454403	cobD	BURPS1106A_1043	-	cobalamin biosynthesis protein
1039	 72.89	0	1020090..1020716	-	208	126452828	cobU	BURPS1106A_1044	-	cobinamide kinase/cobinamide phosphate guanyltransferase
1040	 72.14	0	1020675..1022282	+	535	126451503	cobQ	BURPS1106A_1045	-	cobyric acid synthase
1041	 71.46	0	1022563..1022979	+	138	126451717	-	BURPS1106A_1046	-	DoxX family protein
1042	 67.15	0	1023338..1023961	+	207	126454878	-	BURPS1106A_1047	-	CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein
1043	 61.76	-1	1024076..1024462	-	128	126452947	panD	BURPS1106A_1048	-	aspartate alpha-decarboxylase
1044	 68.33	0	1024515..1025354	-	279	126452166	panC	BURPS1106A_1049	-	pantoate--beta-alanine ligase
1045	 64.04	0	1025745..1025858	-	37	126452209	-	BURPS1106A_1050	-	hypothetical protein
1046	 66.55	0	1026043..1026918	-	291	126455189	scpA	BURPS1106A_1051	-	segregation and condensation protein A
1047	 61.38	-1	1026923..1027111	-	62	126453493	-	BURPS1106A_1052	-	hypothetical protein
1048	 68.54	0	1027320..1029137	+	605	126452849	-	BURPS1106A_1053	-	OMP85 family outer membrane protein
1049	 72.93	0	1029151..1033269	+	1372	126453209	-	BURPS1106A_1054	-	hypothetical protein
1050	 67.06	0	1033566..1034330	+	254	126454585	-	BURPS1106A_1055	-	hypothetical protein
1051	 69.53	0	1034327..1035340	+	337	126455167	-	BURPS1106A_1056	-	O-methyltransferase
1052	 67.08	0	1035689..1037866	-	725	126454059	metG	BURPS1106A_1057	-	methionyl-tRNA synthetase
1053	 71.93	0	1038037..1038150	-	37	126452813	-	BURPS1106A_1058	-	hypothetical protein
1054	 69.60	0	1038348..1038995	-	215	126452105	-	BURPS1106A_1059	-	ompA family protein
67.62	MEAN

5.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.