IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1710b



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.61 STD DEV: 4.48
Burkholderia pseudomallei 1710b chromosome II, complete sequence - 1..3181762
2611 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
844	 62.60	-1	1101970..1103076	+	368	76819137	-	BURPS1710b_A0845	-	Rieske family iron-sulfur cluster-binding protein
845	 64.07	-1	1103227..1104690	+	487	76819511	-	BURPS1710b_A0846	-	ISBma2, transposase
846	 68.74	0	1104815..1105684	+	289	76817655	sseA	BURPS1710b_A0847	-	rhodanese domain-containing protein
847	 66.55	0	1105743..1106618	-	291	76819344	-	BURPS1710b_A0848	-	carboxymethylenebutenolidase
848	 67.66	0	1106909..1109131	+	740	76817447	-	BURPS1710b_A0849	-	hypothetical protein
849	 69.20	0	1109353..1110735	-	460	76818149	ndh	BURPS1710b_A0850	-	NADH dehydrogenase
850	 66.70	0	1111054..1113825	-	923	76818134	polA	BURPS1710b_A0851	-	DNA polymerase I
851	 66.82	0	1113818..1115731	-	637	76818925	-	BURPS1710b_A0853	-	hypothetical protein
852	 62.13	-1	1113827..1114576	+	249	76819601	-	BURPS1710b_A0852	-	decarboxylase family protein
853	 70.88	0	1114994..1115278	+	94	76817740	-	BURPS1710b_A0854	-	hypothetical protein
854	 69.59	0	1115746..1116429	+	227	76818891	-	BURPS1710b_A0855	-	hypothetical protein
855	 67.16	0	1119356..1119757	+	133	76819598	-	BURPS1710b_A0856	-	hypothetical protein
856	 66.47	0	1120523..1122049	-	508	76817910	amn	BURPS1710b_A0857	-	AMP nucleosidase
857	 67.67	0	1122205..1122603	+	132	76818874	-	BURPS1710b_A0858	-	hypothetical protein
858	 68.96	0	1122646..1123692	+	348	76817609	thrB	BURPS1710b_A0859	-	homoserine kinase
859	 67.78	0	1123568..1125001	+	477	76818161	-	BURPS1710b_A0861	-	hypothetical protein
860	 67.04	0	1123683..1124495	+	270	76817439	-	BURPS1710b_A0860	-	hypothetical protein
861	 65.62	0	1124974..1125450	+	158	76818609	-	BURPS1710b_A0862	-	MarR family transcriptional regulator
862	 66.67	0	1125588..1126007	+	139	76817295	ohr	BURPS1710b_A0863	-	organic hydroperoxide resistance protein
863	 60.38	-1	1126120..1126278	-	52	76818018	-	BURPS1710b_A0864	-	hypothetical protein
864	 71.11	0	1126375..1127478	-	367	76819051	phbZ	BURPS1710b_A0865	-	polyhydroxybutyrate depolymerase domain-containing protein
865	 72.39	0	1127774..1128472	+	232	76819589	-	BURPS1710b_A0866	-	PAP2 family protein
866	 69.58	0	1128934..1129824	+	296	76817375	modA	BURPS1710b_A0867	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
867	 72.15	0	1129837..1130511	+	224	76817537	modB	BURPS1710b_A0868	-	molybdate ABC transporter, permease protein
868	 68.52	0	1130513..1131214	+	233	76818899	modC	BURPS1710b_A0869	-	molybdenum ABC transporter, ATP-binding protein
869	 78.69	+2	1131550..1131732	-	60	76819641	-	BURPS1710b_A0870	-	hypothetical protein
870	 70.20	0	1131757..1132605	-	282	76818919	modE	BURPS1710b_A0871	-	transcriptional regulator ModE
871	 73.27	+1	1132640..1134715	-	691	76819670	-	BURPS1710b_A0872	-	CHAD domain-contain protein
872	 61.46	-1	1134769..1135152	-	127	76817339	-	BURPS1710b_A0873	-	tautomerase enzyme family protein
873	 76.48	+1	1135250..1136125	+	291	76818521	-	BURPS1710b_A0874	-	LysR family transcriptional regulator
874	 69.60	0	1136192..1137112	+	306	76818853	-	BURPS1710b_A0875	-	hypothetical protein
875	 73.26	+1	1137136..1137984	+	282	76819248	-	BURPS1710b_A0876	-	sensor histidine kinase
876	 66.74	0	1138070..1139410	+	446	76818356	-	BURPS1710b_A0877	-	CBS domain-containing protein
877	 74.62	+1	1139446..1140036	+	196	76817683	thiE2	BURPS1710b_A0878	-	dGTP-pyrophosphohydrolase; thiamine phosphate synthase
878	 71.41	0	1140195..1141838	-	547	76817678	-	BURPS1710b_A0879	-	alpha amylase family protein
879	 72.83	0	1142114..1142827	+	237	76819360	-	BURPS1710b_A0880	-	hypothetical protein
880	 61.58	-1	1143022..1143630	+	202	76818601	-	BURPS1710b_A0881	-	YbaK/prolyl-tRNA synthetase associated domain-containing protein
881	 65.62	0	1143695..1144933	-	412	76817919	-	BURPS1710b_A0882	-	FMN-dependent dehydrogenase
882	 55.86	-2	1144995..1145105	+	36	76819350	-	BURPS1710b_A0883	-	hypothetical protein
883	 67.40	0	1145186..1145596	+	136	76818561	-	BURPS1710b_A0884	-	transposon protein
884	 60.94	-1	1145838..1146431	-	197	76817719	-	BURPS1710b_A0885	-	amino acid transporter LysE
885	 63.72	-1	1146431..1147381	+	316	76817453	-	BURPS1710b_A0886	-	AraC family transcriptional regulator
886	 58.43	-2	1148121..1149152	+	343	76819775	-	BURPS1710b_A0887	-	hypothetical protein
887	 65.10	0	1149219..1149794	-	191	76818887	-	BURPS1710b_A0888	-	hypothetical protein
888	 66.08	0	1149859..1150368	-	169	76817378	-	BURPS1710b_A0889	-	hypothetical protein
889	 67.43	0	1150319..1151362	-	347	76818067	mhpE	BURPS1710b_A0890	-	4-hydroxy-2-ketovalerate aldolase
890	 63.53	-1	1151359..1152252	-	297	76819183	mhpF	BURPS1710b_A0891	-	acetaldehyde dehydrogenase
891	 69.16	0	1152249..1153091	-	280	76819252	barC	BURPS1710b_A0892	-	BarC
892	 65.32	0	1153088..1154050	-	320	76817807	ilvE	BURPS1710b_A0893	-	branched-chain amino acid aminotransferase
893	 68.27	0	1154047..1154730	-	227	76818448	menG	BURPS1710b_A0894	-	putative transferase
894	 67.82	0	1154738..1155520	-	260	76818214	barC	BURPS1710b_A0895	-	BarC
895	 63.31	-1	1154906..1156933	+	675	76818036	-	BURPS1710b_A0896	-	hypothetical protein
896	 62.58	-1	1155539..1156444	-	301	76818602	barB2	BURPS1710b_A0897	-	BarB2
897	 59.39	-2	1156541..1156801	-	86	76818879	-	BURPS1710b_A0898	-	phosphopantetheine attachment site domain-containing protein
898	 64.84	0	1156798..1158606	-	602	76817276	barD	BURPS1710b_A0899	-	BarD
899	 71.31	0	1159622..1159987	-	121	76818721	-	BURPS1710b_A0900	-	putative regulatory protein
900	 65.15	0	1159971..1160432	-	153	76819439	-	BURPS1710b_A0901	-	hypothetical protein
901	 64.22	0	1160549..1161202	-	217	76819808	-	BURPS1710b_A0902	-	hypothetical protein
902	 71.29	0	1161324..1162058	+	244	76817986	pphA	BURPS1710b_A0903	-	phosphoprotein phosphatase
903	 67.94	0	1162159..1162866	-	235	76818708	-	BURPS1710b_A0904	-	hypothetical protein
904	 62.33	-1	1162857..1163525	-	222	76819498	-	BURPS1710b_A0905	-	hypothetical protein
905	 63.59	-1	1164007..1164915	-	302	76819476	-	BURPS1710b_A0906	-	hypothetical protein
906	 66.08	0	1165419..1165760	+	113	76817652	-	BURPS1710b_A0907	-	peptidyl-prolyl cis-trans isomerase
907	 71.74	0	1165823..1166590	+	255	76819391	-	BURPS1710b_A0908	-	hypothetical protein
908	 71.21	0	1166879..1168045	-	388	76818835	hepB	BURPS1710b_A0909	-	HepB protein
909	 67.93	0	1168045..1169229	-	394	76818132	-	BURPS1710b_A0910	-	putative glycosyltransferase
910	 66.60	0	1169226..1170701	-	491	76817480	-	BURPS1710b_A0911	-	hypothetical protein
911	 69.82	0	1170713..1171852	-	379	76817707	-	BURPS1710b_A0912	-	putative glycosyltransferase group 1 protein
912	 69.01	0	1171896..1175096	-	1066	76819588	-	BURPS1710b_A0913	-	putative glycosyltransferase
913	 67.79	0	1172873..1175092	-	739	76819162	epsB	BURPS1710b_A0914	-	EpsB
914	 66.41	0	1175143..1176333	-	396	76818460	wza	BURPS1710b_A0915	-	capsular polysaccharide biosynthesis/export periplasmic protein
915	 66.44	0	1176312..1176746	-	144	76817418	-	BURPS1710b_A0916	-	hypothetical protein
916	 69.13	0	1176769..1178190	-	473	76819281	udg2	BURPS1710b_A0917	-	UDP-glucose 6-dehydrogenase 2
917	 64.06	-1	1178236..1179618	-	460	76819029	wcaJ	BURPS1710b_A0918	-	colanic biosynthesis UDP-glucose lipid carrier transferase
918	 66.60	0	1180047..1181567	+	506	76819791	-	BURPS1710b_A0919	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
919	 69.25	0	1181640..1182761	-	373	76817624	-	BURPS1710b_A0920	-	hypothetical protein
920	 63.57	-1	1183221..1183802	-	193	76818343	-	BURPS1710b_A0921	-	hypothetical protein
921	 68.68	0	1183828..1185165	-	445	76818097	glpC	BURPS1710b_A0922	-	putative ferredoxin
922	 68.85	0	1183915..1185747	+	610	76819203	-	BURPS1710b_A0923	-	hypothetical protein
923	 63.36	-1	1185277..1185699	-	140	76818888	-	BURPS1710b_A0924	-	rubrerythrin
924	 69.52	0	1185844..1185948	-	34	76817399	-	BURPS1710b_A0925	-	hypothetical protein
925	 67.18	0	1185970..1187334	-	454	76817278	ampD	BURPS1710b_A0926	-	N-acetylmuramoyl-L-alanine amidase domain-containing protein
926	 72.83	0	1187577..1188842	-	421	76817971	sig43	BURPS1710b_A0927	-	ECF subfamily RNA polymerase sigma factor
927	 72.22	0	1188842..1189381	-	179	76819190	-	BURPS1710b_A0928	-	hypothetical protein
928	 69.38	0	1189025..1190353	+	442	76818967	-	BURPS1710b_A0930	-	hypothetical protein
929	 67.15	0	1189403..1189816	-	137	76817490	-	BURPS1710b_A0929	-	DGPF domain-containing protein
930	 67.80	0	1189982..1190335	-	117	76818172	-	BURPS1710b_A0931	-	DGPF domain-containing protein
931	 74.07	+1	1190423..1190584	+	53	76819506	-	BURPS1710b_A0932	-	hypothetical protein
932	 70.45	0	1190668..1190799	-	43	76817812	-	BURPS1710b_A0933	-	hypothetical protein
933	 69.32	0	1191035..1192579	+	514	76818418	-	BURPS1710b_A0934	-	extracellular nuclease
934	 71.65	0	1193368..1193748	+	126	76819282	elaB	BURPS1710b_A0935	-	transmembrane protein
935	 68.21	0	1193797..1194381	+	194	76817247	-	BURPS1710b_A0936	-	putative lipoprotein
936	 64.62	0	1194543..1195667	+	374	76818196	-	BURPS1710b_A0937	-	PerM family permease
937	 64.30	0	1195883..1196347	-	154	76818379	-	BURPS1710b_A0938	-	hypothetical protein
938	 70.74	0	1196484..1198739	-	751	76817621	-	BURPS1710b_A0939	-	TonB-dependent receptor
939	 74.38	+1	1199047..1200252	+	401	76819626	-	BURPS1710b_A0940	-	major facilitator family transporter
940	 70.28	0	1200278..1203403	+	1041	76817338	-	BURPS1710b_A0942	-	hypothetical protein
941	 70.43	0	1200929..1202149	-	406	76819382	-	BURPS1710b_A0941	-	oxidoreductase, zinc-binding dehydrogenase family protein
942	 70.80	0	1202216..1203013	-	265	76818584	linX	BURPS1710b_A0943	-	short chain dehydrogenase
943	 67.57	0	1203237..1204007	-	256	76817891	-	BURPS1710b_A0944	-	short chain dehydrogenase
68.61	MEAN

4.48	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.