IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1710b



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.61 STD DEV: 4.48
Burkholderia pseudomallei 1710b chromosome II, complete sequence - 1..3181762
2611 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
802	 64.01	-1	1053350..1055005	-	551	76817411	fhaC	BURPS1710b_A0802	-	HlyB family hemolysin activator protein
803	 71.35	0	1056154..1056324	+	56	76818577	-	BURPS1710b_A0803	-	hypothetical protein
804	 69.25	0	1056318..1058483	-	721	76818280	-	BURPS1710b_A0804	-	cytochrome c family protein
805	 71.34	0	1058889..1059551	-	220	76819280	-	BURPS1710b_A0805	-	hypothetical protein
806	 63.43	-1	1059574..1061181	-	535	76817809	-	BURPS1710b_A0806	-	tyrosinase
807	 66.99	0	1060676..1062826	-	716	76817281	-	BURPS1710b_A0808	-	hypothetical protein
808	 70.97	0	1061233..1061325	-	30	76819290	-	BURPS1710b_A0807	-	hypothetical protein
809	 72.17	0	1061491..1062126	-	211	76818842	-	BURPS1710b_A0809	-	hypothetical protein
810	 64.44	0	1063118..1063252	+	44	76818295	-	BURPS1710b_A0810	-	hypothetical protein
811	 65.35	0	1063599..1065347	+	582	76817576	scpB	BURPS1710b_A0811	-	sedolisin
812	 66.79	0	1065442..1066281	-	279	76819794	-	BURPS1710b_A0812	-	polyamine ABC transporter, permease protein
813	 67.46	0	1066312..1067571	-	419	76819095	-	BURPS1710b_A0813	-	spermidine/putrescine ABC transporter, permease protein
814	 67.41	0	1067522..1067656	-	44	76818569	-	BURPS1710b_A0814	-	hypothetical protein
815	 65.20	0	1067672..1068898	-	408	76818101	-	BURPS1710b_A0815	-	spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein
816	 66.03	0	1068793..1069893	-	366	76817531	-	BURPS1710b_A0816	-	spermidine/putrescine ABC transporter, ATP-binding protein
817	 69.36	0	1070011..1071531	+	506	76817266	-	BURPS1710b_A0817	-	GntR family transcriptional regulator
818	 72.17	0	1071638..1072672	-	344	76819781	lipB	BURPS1710b_A0818	-	lipase chaperone
819	 68.64	0	1071641..1073923	+	760	76818348	-	BURPS1710b_A0819	-	hypothetical protein
820	 66.94	0	1072676..1073770	-	364	76819054	lipA1	BURPS1710b_A0820	-	lipase precursor
821	 69.16	0	1074094..1076343	-	749	76817611	-	BURPS1710b_A0821	-	TonB-dependent copper receptor
822	 71.49	0	1076431..1076928	-	165	76818709	-	BURPS1710b_A0822	-	hypothetical protein
823	 65.63	0	1076987..1077664	-	225	76817974	-	BURPS1710b_A0823	-	cytochrome b561
824	 64.94	0	1077792..1078427	+	211	76817371	-	BURPS1710b_A0824	-	integral membrane protein
825	 72.77	0	1078558..1079589	-	343	76819709	-	BURPS1710b_A0825	-	peptidase
826	 68.63	0	1079602..1080213	-	203	76819083	-	BURPS1710b_A0826	-	DSBH domain-containing protein
827	 67.27	0	1080358..1080690	-	110	76818818	-	BURPS1710b_A0827	-	hypothetical protein
828	 66.67	0	1080889..1082304	-	471	76817886	gnd	BURPS1710b_A0828	-	6-phosphogluconate dehydrogenase
829	 70.94	0	1082788..1083465	-	225	76819492	-	BURPS1710b_A0829	-	hypothetical protein
830	 68.59	0	1083428..1085821	-	797	76818710	-	BURPS1710b_A0830	-	NAD-dependent deacetylase
831	 67.51	0	1084357..1085781	-	474	76818359	-	BURPS1710b_A0831	-	cytosine/purines/uracil/thiamine/allantoin permease family protein
832	 64.54	0	1089393..1091795	-	800	76817579	rpoD	BURPS1710b_A0833	-	RNA polymerase sigma factor RpoD
833	 66.77	0	1091879..1093753	-	624	76819088	dnaG	BURPS1710b_A0834	-	DNA primase
834	 67.79	0	1093848..1094294	-	148	76818355	-	BURPS1710b_A0835	-	GatB/Yqey domain-containing protein
835	 59.15	-2	1094461..1094673	-	70	76817923	rpsU	BURPS1710b_A0836	-	30S ribosomal protein S21
836	 69.93	0	1094753..1095976	-	407	76819820	-	BURPS1710b_A0837	-	hypothetical protein
837	 70.38	0	1095203..1097440	+	745	76818194	-	BURPS1710b_A0838	-	hypothetical protein
838	 71.62	0	1096056..1097366	-	436	76819011	-	BURPS1710b_A0840	-	hypothetical protein
839	 70.89	0	1096116..1097156	+	346	162210103	gcp	BURPS1710b_A0839	-	O-sialoglycoprotein endopeptidase
840	 66.67	0	1097578..1098378	-	266	76818260	-	BURPS1710b_A0841	-	putative GTP cyclohydrolase
841	 67.35	0	1098538..1100442	-	634	76819327	dxs	BURPS1710b_A0842	-	1-deoxy-D-xylulose-5-phosphate synthase
842	 71.30	0	1100526..1101410	-	294	76817464	ispA	BURPS1710b_A0843	-	geranyltranstransferase
843	 65.08	0	1101407..1101721	-	104	76818422	xseB	BURPS1710b_A0844	-	exodeoxyribonuclease VII small subunit
844	 62.60	-1	1101970..1103076	+	368	76819137	-	BURPS1710b_A0845	-	Rieske family iron-sulfur cluster-binding protein
845	 64.07	-1	1103227..1104690	+	487	76819511	-	BURPS1710b_A0846	-	ISBma2, transposase
846	 68.74	0	1104815..1105684	+	289	76817655	sseA	BURPS1710b_A0847	-	rhodanese domain-containing protein
847	 66.55	0	1105743..1106618	-	291	76819344	-	BURPS1710b_A0848	-	carboxymethylenebutenolidase
848	 67.66	0	1106909..1109131	+	740	76817447	-	BURPS1710b_A0849	-	hypothetical protein
849	 69.20	0	1109353..1110735	-	460	76818149	ndh	BURPS1710b_A0850	-	NADH dehydrogenase
850	 66.70	0	1111054..1113825	-	923	76818134	polA	BURPS1710b_A0851	-	DNA polymerase I
851	 66.82	0	1113818..1115731	-	637	76818925	-	BURPS1710b_A0853	-	hypothetical protein
852	 62.13	-1	1113827..1114576	+	249	76819601	-	BURPS1710b_A0852	-	decarboxylase family protein
853	 70.88	0	1114994..1115278	+	94	76817740	-	BURPS1710b_A0854	-	hypothetical protein
854	 69.59	0	1115746..1116429	+	227	76818891	-	BURPS1710b_A0855	-	hypothetical protein
855	 67.16	0	1119356..1119757	+	133	76819598	-	BURPS1710b_A0856	-	hypothetical protein
856	 66.47	0	1120523..1122049	-	508	76817910	amn	BURPS1710b_A0857	-	AMP nucleosidase
857	 67.67	0	1122205..1122603	+	132	76818874	-	BURPS1710b_A0858	-	hypothetical protein
858	 68.96	0	1122646..1123692	+	348	76817609	thrB	BURPS1710b_A0859	-	homoserine kinase
859	 67.78	0	1123568..1125001	+	477	76818161	-	BURPS1710b_A0861	-	hypothetical protein
860	 67.04	0	1123683..1124495	+	270	76817439	-	BURPS1710b_A0860	-	hypothetical protein
861	 65.62	0	1124974..1125450	+	158	76818609	-	BURPS1710b_A0862	-	MarR family transcriptional regulator
862	 66.67	0	1125588..1126007	+	139	76817295	ohr	BURPS1710b_A0863	-	organic hydroperoxide resistance protein
863	 60.38	-1	1126120..1126278	-	52	76818018	-	BURPS1710b_A0864	-	hypothetical protein
864	 71.11	0	1126375..1127478	-	367	76819051	phbZ	BURPS1710b_A0865	-	polyhydroxybutyrate depolymerase domain-containing protein
865	 72.39	0	1127774..1128472	+	232	76819589	-	BURPS1710b_A0866	-	PAP2 family protein
866	 69.58	0	1128934..1129824	+	296	76817375	modA	BURPS1710b_A0867	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
867	 72.15	0	1129837..1130511	+	224	76817537	modB	BURPS1710b_A0868	-	molybdate ABC transporter, permease protein
868	 68.52	0	1130513..1131214	+	233	76818899	modC	BURPS1710b_A0869	-	molybdenum ABC transporter, ATP-binding protein
869	 78.69	+2	1131550..1131732	-	60	76819641	-	BURPS1710b_A0870	-	hypothetical protein
870	 70.20	0	1131757..1132605	-	282	76818919	modE	BURPS1710b_A0871	-	transcriptional regulator ModE
871	 73.27	+1	1132640..1134715	-	691	76819670	-	BURPS1710b_A0872	-	CHAD domain-contain protein
872	 61.46	-1	1134769..1135152	-	127	76817339	-	BURPS1710b_A0873	-	tautomerase enzyme family protein
873	 76.48	+1	1135250..1136125	+	291	76818521	-	BURPS1710b_A0874	-	LysR family transcriptional regulator
874	 69.60	0	1136192..1137112	+	306	76818853	-	BURPS1710b_A0875	-	hypothetical protein
875	 73.26	+1	1137136..1137984	+	282	76819248	-	BURPS1710b_A0876	-	sensor histidine kinase
876	 66.74	0	1138070..1139410	+	446	76818356	-	BURPS1710b_A0877	-	CBS domain-containing protein
877	 74.62	+1	1139446..1140036	+	196	76817683	thiE2	BURPS1710b_A0878	-	dGTP-pyrophosphohydrolase; thiamine phosphate synthase
878	 71.41	0	1140195..1141838	-	547	76817678	-	BURPS1710b_A0879	-	alpha amylase family protein
879	 72.83	0	1142114..1142827	+	237	76819360	-	BURPS1710b_A0880	-	hypothetical protein
880	 61.58	-1	1143022..1143630	+	202	76818601	-	BURPS1710b_A0881	-	YbaK/prolyl-tRNA synthetase associated domain-containing protein
881	 65.62	0	1143695..1144933	-	412	76817919	-	BURPS1710b_A0882	-	FMN-dependent dehydrogenase
882	 55.86	-2	1144995..1145105	+	36	76819350	-	BURPS1710b_A0883	-	hypothetical protein
883	 67.40	0	1145186..1145596	+	136	76818561	-	BURPS1710b_A0884	-	transposon protein
884	 60.94	-1	1145838..1146431	-	197	76817719	-	BURPS1710b_A0885	-	amino acid transporter LysE
885	 63.72	-1	1146431..1147381	+	316	76817453	-	BURPS1710b_A0886	-	AraC family transcriptional regulator
886	 58.43	-2	1148121..1149152	+	343	76819775	-	BURPS1710b_A0887	-	hypothetical protein
887	 65.10	0	1149219..1149794	-	191	76818887	-	BURPS1710b_A0888	-	hypothetical protein
888	 66.08	0	1149859..1150368	-	169	76817378	-	BURPS1710b_A0889	-	hypothetical protein
889	 67.43	0	1150319..1151362	-	347	76818067	mhpE	BURPS1710b_A0890	-	4-hydroxy-2-ketovalerate aldolase
890	 63.53	-1	1151359..1152252	-	297	76819183	mhpF	BURPS1710b_A0891	-	acetaldehyde dehydrogenase
891	 69.16	0	1152249..1153091	-	280	76819252	barC	BURPS1710b_A0892	-	BarC
892	 65.32	0	1153088..1154050	-	320	76817807	ilvE	BURPS1710b_A0893	-	branched-chain amino acid aminotransferase
893	 68.27	0	1154047..1154730	-	227	76818448	menG	BURPS1710b_A0894	-	putative transferase
894	 67.82	0	1154738..1155520	-	260	76818214	barC	BURPS1710b_A0895	-	BarC
895	 63.31	-1	1154906..1156933	+	675	76818036	-	BURPS1710b_A0896	-	hypothetical protein
896	 62.58	-1	1155539..1156444	-	301	76818602	barB2	BURPS1710b_A0897	-	BarB2
897	 59.39	-2	1156541..1156801	-	86	76818879	-	BURPS1710b_A0898	-	phosphopantetheine attachment site domain-containing protein
898	 64.84	0	1156798..1158606	-	602	76817276	barD	BURPS1710b_A0899	-	BarD
899	 71.31	0	1159622..1159987	-	121	76818721	-	BURPS1710b_A0900	-	putative regulatory protein
900	 65.15	0	1159971..1160432	-	153	76819439	-	BURPS1710b_A0901	-	hypothetical protein
901	 64.22	0	1160549..1161202	-	217	76819808	-	BURPS1710b_A0902	-	hypothetical protein
68.61	MEAN

4.48	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.