IslandPath Analysis: Burkholderia pseudomallei 1710b



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.61   STD DEV: 4.48
Burkholderia pseudomallei 1710b chromosome II, complete sequence - 1..3181762
2611 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
31	 69.85	0	57346..60579	-	1077	76819256	czcA	BURPS1710b_A0031	-	heavy metal efflux pump CzcA
32	 72.66	0	60625..62175	-	516	76819534	czcB	BURPS1710b_A0032	-	heavy metal resistance protein CzcB
33	 74.25	+1	62105..63436	-	443	76817771	czcC	BURPS1710b_A0033	-	heavy metal resistance protein CzcC
34	 72.27	0	63711..64031	+	106	76818957	-	BURPS1710b_A0035	-	hypothetical protein
35	 74.04	+1	63728..64012	-	94	76818052	-	BURPS1710b_A0034	-	hypothetical protein
36	 60.00	-1	64411..64650	-	79	76819209	-	BURPS1710b_A0036	-	putative bacteriophage protein
37	 64.21	0	65194..65682	-	162	76817543	-	BURPS1710b_A0037	-	hypothetical protein
38	 63.51	-1	65867..66499	+	210	76817849	-	BURPS1710b_A0038	-	YbaK/prolyl-tRNA synthetase associated domain-containing protein
39	 71.06	0	66854..67969	-	371	76818667	ald	BURPS1710b_A0039	-	alanine dehydrogenase
40	 60.61	-1	68693..69022	-	109	76818190	bprA	BURPS1710b_A0040	-	H-NS histone family protein
41	 66.33	0	69036..69638	-	200	76817425	-	BURPS1710b_A0041	-	ProQ protein
42	 73.48	+1	69758..70858	+	366	76818823	-	BURPS1710b_A0042	-	hydratase/decarboxylase family protein
43	 72.84	0	70076..71500	-	474	76819407	-	BURPS1710b_A0043	-	hypothetical protein
44	 71.45	0	70965..71801	+	278	76818106	-	BURPS1710b_A0044	-	hypothetical protein
45	 73.61	+1	71693..76774	-	1693	76818302	-	BURPS1710b_A0046	-	hypothetical protein
46	 72.94	0	71798..73645	+	615	76819769	-	BURPS1710b_A0045	-	heat shock protein 70
47	 73.97	+1	73649..76456	+	935	76818939	-	BURPS1710b_A0047	-	heat shock protein 70
48	 72.22	0	76746..78221	-	491	76819068	ths	BURPS1710b_A0048	-	polyglutamate synthase
49	 70.27	0	78456..79037	-	193	76818537	-	BURPS1710b_A0049	-	hypothetical protein
50	 78.21	+2	79486..79797	+	103	76818015	-	BURPS1710b_A0050	-	hypothetical protein
51	 73.50	+1	79840..80073	+	77	76819372	-	BURPS1710b_A0051	-	hypothetical protein
52	 72.65	0	79905..80021	-	38	76818417	-	BURPS1710b_A0052	-	hypothetical protein
53	 69.39	0	80151..80774	-	207	76818662	-	BURPS1710b_A0053	-	hypothetical protein
54	 74.66	+1	80826..83339	-	837	76818782	-	BURPS1710b_A0054	-	putative cation transport ATPase protein
55	 71.04	0	83437..83916	-	159	76818069	-	BURPS1710b_A0055	-	hypothetical protein
56	 69.55	0	84439..85755	+	438	76819599	-	BURPS1710b_A0056	-	methyltransferase small domain-containing protein
57	 71.98	0	85732..87330	-	532	76817670	-	BURPS1710b_A0058	-	hypothetical protein
58	 71.16	0	85752..87509	-	585	76818592	-	BURPS1710b_A0059	-	thiaminase I precursor
59	 77.78	+2	86009..86188	-	59	76819039	-	BURPS1710b_A0057	-	putative periplasmic thiamine binding protein
60	 72.62	0	87530..88537	-	335	76818156	thiD2	BURPS1710b_A0060	-	phosphomethylpyrimidine kinase
61	 70.69	0	88327..90114	-	595	76817413	-	BURPS1710b_A0062	-	hypothetical protein
62	 69.58	0	88536..90386	+	616	76819307	-	BURPS1710b_A0063	-	hypothetical protein
63	 70.72	0	88572..89312	-	246	76819593	-	BURPS1710b_A0061	-	Orf34
64	 68.08	0	89328..90317	-	329	76819171	-	BURPS1710b_A0064	-	putative thymidylate synthase protein
65	 55.56	-2	90698..90805	+	35	76817943	-	BURPS1710b_A0065	-	hypothetical protein
66	 71.28	0	90771..91247	-	158	76818822	-	BURPS1710b_A0066	-	NUDIX family hydrolase
67	 57.22	-2	91240..91419	-	59	76817396	-	BURPS1710b_A0067	-	hypothetical protein
68	 63.10	-1	91648..91815	-	55	76817337	-	BURPS1710b_A0068	-	hypothetical protein
69	 68.05	0	91833..92627	+	264	76819685	-	BURPS1710b_A0069	-	phosphoethanolamine N-methyltransferase
70	 69.02	0	92684..93832	+	382	76818031	-	BURPS1710b_A0070	-	putative gamma-butyrobetaine,2-oxoglutarate dioxygenase
71	 74.67	+1	94028..94864	-	278	76817312	-	BURPS1710b_A0071	-	integral membrane protein
72	 69.79	0	95034..97049	+	671	76819167	arcD	BURPS1710b_A0072	-	amino acid permease
73	 72.17	0	97277..97966	+	229	76818451	-	BURPS1710b_A0073	-	peptidase
74	 70.92	0	98105..100858	-	917	76818320	ftsH	BURPS1710b_A0074	-	FtsH-2 protease
75	 70.57	0	101138..103240	+	700	76817516	-	BURPS1710b_A0075	-	hypothetical protein
76	 72.08	0	101521..103551	+	676	76818626	-	BURPS1710b_A0076	-	hypothetical protein
77	 68.83	0	103371..104111	-	246	76819384	-	BURPS1710b_A0077	-	transcriptional regulator
78	 72.68	0	104193..105290	+	365	76818550	-	BURPS1710b_A0078	-	RND family efflux transporter MFP subunit
79	 68.63	0	105287..108397	+	1036	76817978	-	BURPS1710b_A0079	-	hydrophobe/amphiphile efflux family protein
80	 72.22	0	108412..110067	+	551	76818680	oprB	BURPS1710b_A0080	-	RND efflux system outer membrane lipoprotein
81	 66.50	0	110454..111041	+	195	76819231	ribA	BURPS1710b_A0081	-	GTP cyclohydrolase II
82	 70.20	0	111038..112735	+	565	76818242	toxC	BURPS1710b_A0082	-	WD domain-containing protein
83	 72.15	0	112732..113442	+	236	76818103	-	BURPS1710b_A0083	-	hypothetical protein
84	 71.44	0	113439..114422	+	327	76818972	toxD	BURPS1710b_A0084	-	TRP-2
85	 76.48	+1	114364..115728	+	454	76819539	ribD	BURPS1710b_A0085	-	riboflavin biosynthesis protein RibD
86	 67.24	0	115788..116840	+	350	76817238	grhL	BURPS1710b_A0086	-	putative O-methyltransferase
87	 70.60	0	116843..117706	+	287	76818486	-	BURPS1710b_A0087	-	putative glyoxylase/bleomycin resistance protein/dioxygenase superfamily protein
88	 73.08	0	117738..119141	+	467	76819680	-	BURPS1710b_A0088	-	major facilitator transporter
89	 73.55	+1	118954..121176	-	740	76819166	-	BURPS1710b_A0090	-	hypothetical protein
90	 69.86	0	119206..119706	+	166	76818476	-	BURPS1710b_A0089	-	hypothetical protein
91	 74.73	+1	119833..121134	+	433	76819041	-	BURPS1710b_A0091	-	hypothetical protein
92	 62.56	-1	121348..122151	-	267	76818644	-	BURPS1710b_A0092	-	LuxR family transcriptional regulator
93	 66.44	0	122532..122972	-	146	76817830	-	BURPS1710b_A0093	-	hypothetical protein
94	 69.34	0	123069..125090	-	673	76817484	fadH	BURPS1710b_A0094	-	2,4-dienoyl-CoA reductase (NADPH)
95	 68.36	0	125206..125796	+	196	76818167	-	BURPS1710b_A0095	-	PadR-like family regulatory protein
96	 77.45	+1	125793..125894	+	33	76818856	-	BURPS1710b_A0096	-	hypothetical protein
97	 74.19	+1	125992..126882	+	296	76819595	-	BURPS1710b_A0097	-	putative hydroxyethylthioazole kinase
98	 50.90	-2	127045..127266	+	73	76819318	-	BURPS1710b_A0098	-	hypothetical protein
99	 66.31	0	127428..128264	+	278	76818498	-	BURPS1710b_A0099	-	hypothetical protein
100	 68.13	0	128379..129266	+	295	76819292	-	BURPS1710b_A0100	-	hypothetical protein
101	 73.75	+1	129311..130030	+	239	76817708	-	BURPS1710b_A0101	-	hypothetical protein
102	 73.11	+1	129526..130239	-	237	76818543	-	BURPS1710b_A0102	-	hypothetical protein
103	 69.28	0	130231..130536	+	101	76818048	-	BURPS1710b_A0103	-	hypothetical protein
104	 65.12	0	130303..130560	-	85	76819715	-	BURPS1710b_A0104	-	hypothetical protein
105	 69.17	0	130897..131856	+	319	76818279	-	BURPS1710b_A0105	-	universal stress protein
106	 68.59	0	132075..132491	-	138	76817489	-	BURPS1710b_A0106	-	hypothetical protein
107	 73.00	0	133440..135143	-	567	76819355	hyfG	BURPS1710b_A0107	-	hydrogenase subunit
108	 67.83	0	135168..136628	-	486	76819063	hyfF	BURPS1710b_A0108	-	hydrogenase 4 subunit F
109	 64.55	0	136621..137280	-	219	76818420	hyfE	BURPS1710b_A0109	-	hydrogenase 4 membrane component
110	 69.84	0	137281..140208	-	975	76817661	hyfD	BURPS1710b_A0110	-	formate hydrogenlyase subunit 4
111	 68.86	0	140590..141363	+	257	76818223	-	BURPS1710b_A0111	-	hypothetical protein
112	 69.48	0	141590..142087	+	165	76817934	-	BURPS1710b_A0112	-	hypothetical protein
113	 69.35	0	142145..142405	+	86	76819833	ptsH	BURPS1710b_A0113	-	phosphocarrier HPr protein
114	 70.76	0	142426..143256	+	276	76819471	-	BURPS1710b_A0114	-	transferase
115	 65.75	0	143363..143581	+	72	76817647	-	BURPS1710b_A0115	-	CopG family protein-related protein
116	 74.92	+1	143622..143948	+	108	76818023	-	BURPS1710b_A0116	-	hypothetical protein
117	 68.78	0	143953..145227	-	424	76818646	narK	BURPS1710b_A0117	-	nitrate/nitrite transporter
118	 72.56	0	145252..146049	-	265	76817394	-	BURPS1710b_A0118	-	peptidyl-prolyl cis-trans isomerase C
119	 66.52	0	146069..146752	-	227	76818082	narI	BURPS1710b_A0119	-	respiratory nitrate reductase, gamma subunit
120	 70.72	0	146931..147620	-	229	76819153	narJ	BURPS1710b_A0120	-	nitrate reductase 1, delta subunit
121	 65.49	0	147617..149146	-	509	76819592	narH	BURPS1710b_A0121	-	nitrate reductase, beta subunit
122	 68.35	0	149143..152946	-	1267	76817687	-	BURPS1710b_A0122	-	nitrate reductase, alpha subunit
123	 67.31	0	153056..153520	-	154	76817428	-	BURPS1710b_A0123	-	hypothetical protein
124	 70.75	0	153331..153477	+	48	76818726	-	BURPS1710b_A0124	-	hypothetical protein
125	 64.86	0	153336..153557	-	73	76817941	-	BURPS1710b_A0125	-	hypothetical protein
126	 71.02	0	153824..155683	+	619	76818354	-	BURPS1710b_A0126	-	sensory box histidine kinase/response regulator
127	 66.67	0	155680..156327	+	215	76819050	vsrD	BURPS1710b_A0127	-	LuxR family DNA-binding response regulator
128	 68.37	0	156935..157345	+	136	76818833	gacA	BURPS1710b_A0128	-	response regulator
129	 65.77	0	157358..158137	+	259	76817622	fnrL	BURPS1710b_A0129	-	Crp/FNR family transcriptional regulator
130	 67.89	0	158551..160269	-	572	76818204	-	BURPS1710b_A0130	-	hydrolase CocE/NonD family protein subfamily
68.61	MEAN

4.48	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.