IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1710b



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.61 STD DEV: 4.48
Burkholderia pseudomallei 1710b chromosome II, complete sequence - 1..3181762
2611 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
547	 74.74	+1	740509..744408	+	1299	76818261	-	BURPS1710b_A0549	-	hypothetical protein
548	 53.51	-2	742130..742243	+	37	76819403	-	BURPS1710b_A0547	-	hypothetical protein
549	 80.30	+2	742256..742453	+	65	76818689	-	BURPS1710b_A0548	-	hypothetical protein
550	 67.23	0	744424..746364	+	646	76819789	-	BURPS1710b_A0550	-	hypothetical protein
551	 73.89	+1	745242..745670	-	142	76817554	-	BURPS1710b_A0551	-	hypothetical protein
552	 55.41	-2	746775..747458	+	227	76819007	folE	BURPS1710b_A0552	-	GTP cyclohydrolase I
553	 62.96	-1	747572..747895	+	107	76819810	-	BURPS1710b_A0553	-	putative transposase
554	 53.07	-2	748519..750048	-	509	76819070	-	BURPS1710b_A0554	-	hypothetical protein
555	 63.85	-1	751157..751795	+	212	76818771	tnpA	BURPS1710b_A0555	-	ISJP4 transposase
556	 70.23	0	751879..753000	-	373	76818043	-	BURPS1710b_A0556	-	AraC family transcriptional regulator
557	 70.77	0	753013..755058	+	681	76818381	-	BURPS1710b_A0559	-	hypothetical protein
558	 81.20	+2	753129..753362	+	77	76817346	-	BURPS1710b_A0557	-	hypothetical protein
559	 65.99	0	753334..753777	-	147	76818173	-	BURPS1710b_A0558	-	hypothetical protein
560	 68.60	0	754033..754704	-	223	76819257	citB1	BURPS1710b_A0560	-	DNA-binding response regulator
561	 66.45	0	754948..755403	-	151	76819160	bicP	BURPS1710b_A0561	-	putative chaperone
562	 67.77	0	755544..757082	-	512	76817646	bopA	BURPS1710b_A0562	-	BopA protein
563	 71.01	0	757201..757614	+	137	76819587	-	BURPS1710b_A0563	-	hypothetical protein
564	 68.96	0	757715..758500	+	261	76819430	bopE	BURPS1710b_A0564	-	type III secretion target BopE
565	 71.63	0	758925..759488	-	187	76817598	bapC	BURPS1710b_A0565	-	BapC protein
566	 72.70	0	759485..759766	-	93	76819559	bapB	BURPS1710b_A0566	-	acyl carrier protein
567	 74.54	+1	759763..762504	-	913	76817384	-	BURPS1710b_A0567	-	hypothetical protein
568	 64.14	0	762562..763392	-	276	76817926	-	BURPS1710b_A0568	-	type III effector protein IpaD/SipD/SspD
569	 66.67	0	763556..763858	-	100	76817328	bprA	BURPS1710b_A0569	-	HNS-like transcription regulator protein
570	 71.51	0	763980..765239	-	419	76817906	bipC	BURPS1710b_A0570	-	putative cell invasion protein
571	 69.78	0	765281..767143	-	620	76818804	bipB	BURPS1710b_A0571	-	BipB protein
572	 67.26	0	767137..769824	+	895	76819691	-	BURPS1710b_A0574	-	200 kDa antigen p200, putative
573	 65.47	0	767162..767662	-	166	76819392	-	BURPS1710b_A0572	-	type III secretion low calcium response chaperone LcrH/SycD
574	 68.69	0	767803..769038	-	411	76818361	bsaZ	BURPS1710b_A0573	-	surface presentation of antigens protein SpaS
575	 68.52	0	769042..769797	-	251	76819134	-	BURPS1710b_A0575	-	type III secretion protein SpaR/YscT/HrcT
576	 65.88	0	769831..770085	-	84	76817353	bsaX	BURPS1710b_A0576	-	type III secretion system protein BsaX
577	 63.14	-1	770123..770803	-	226	76819720	spaP	BURPS1710b_A0577	-	surface presentation of antigens protein SpaP
578	 74.27	+1	770793..771752	-	319	76818002	-	BURPS1710b_A0578	-	type III secretion system apparatus protein YscQ/HrcQ
579	 78.17	+2	771154..772788	-	544	76818274	-	BURPS1710b_A0579	-	hypothetical protein
580	 77.52	+1	771749..773038	-	429	76819089	bsaU	BURPS1710b_A0580	-	BsaU protein
581	 74.41	+1	773016..773480	-	154	76818949	bsaT	BURPS1710b_A0581	-	surface presentation of antigens protein
582	 72.78	0	773477..774784	-	435	76818421	bsaS	BURPS1710b_A0582	-	ATP synthase SpaL
583	 66.91	0	774781..775188	-	135	76819493	bsaR	BURPS1710b_A0583	-	surface presentation of antigens protein
584	 66.38	0	775200..777272	-	690	76819578	bsaQ	BURPS1710b_A0584	-	type III secretion system protein BsaQ
585	 71.86	0	777308..780289	-	993	76817937	bsaO	BURPS1710b_A0585	-	Type III secretion system protein
586	 68.53	0	778426..779445	-	339	76817430	-	BURPS1710b_A0586	-	YscC/HrcC family type III secretion outer membrane protein
587	 66.83	0	780303..780929	-	208	76819330	bsaN	BURPS1710b_A0587	-	type III secretion system transcriptional regulator BsaN
588	 53.11	-2	780904..781176	+	90	76818781	-	BURPS1710b_A0588	-	hypothetical protein
589	 69.93	0	781455..782741	+	428	76818491	-	BURPS1710b_A0589	-	type III secretion system protein PrgH/EprH
590	 63.64	-1	782776..783369	+	197	76817887	bsaK	BURPS1710b_A0590	-	Type III secretion system protein
591	 71.31	0	783374..784321	+	315	76819532	basJ	BURPS1710b_A0591	-	Type III secretion system protein
592	 72.45	0	784318..784905	+	195	76818944	-	BURPS1710b_A0592	-	type III secretion apparatus protein OrgA/MxiK
593	 73.96	+1	784874..785668	+	264	76817633	-	BURPS1710b_A0593	-	Type III secretion system protein
594	 59.80	-1	785730..785831	+	33	76819776	-	BURPS1710b_A0594	-	hypothetical protein
595	 67.16	0	785986..786390	+	134	76818768	-	BURPS1710b_A0595	-	hypothetical protein
596	 64.61	0	786669..787640	+	323	76818316	-	BURPS1710b_A0596	-	hypothetical protein
597	 65.03	0	787727..788092	+	121	76818262	-	BURPS1710b_A0597	-	hypothetical protein
598	 70.57	0	788235..788516	-	93	76817672	-	BURPS1710b_A0598	-	hypothetical protein
599	 68.96	0	789136..790833	+	565	76819684	zmpA	BURPS1710b_A0599	-	thermolysin metallopeptidase
600	 71.05	0	791955..792593	-	212	76817336	emrR	BURPS1710b_A0600	-	MarR family transcriptional regulator
601	 66.88	0	792770..793228	+	152	76819490	-	BURPS1710b_A0601	-	putative glyoxalase
602	 66.59	0	793795..795114	+	439	76818830	kgtP	BURPS1710b_A0602	-	alpha-ketoglutarate permease
603	 69.71	0	795492..796379	-	295	76818224	-	BURPS1710b_A0603	-	LysR family transcriptional regulator
604	 69.23	0	796378..797703	+	441	76817657	mdlB	BURPS1710b_A0604	-	putative L(+)-mandelate dehydrogenase
605	 66.19	0	797827..799491	-	554	76819704	-	BURPS1710b_A0605	-	serine-type carboxypeptidase family protein
606	 73.64	+1	799507..801642	+	711	76818857	-	BURPS1710b_A0607	-	hypothetical protein
607	 75.45	+1	799659..800102	-	147	76819236	-	BURPS1710b_A0606	-	hypothetical protein
608	 71.16	0	800185..801918	-	577	76817289	scpA	BURPS1710b_A0608	-	kumamolisin
609	 60.13	-1	801649..801801	+	50	76819577	-	BURPS1710b_A0609	-	hypothetical protein
610	 72.73	0	802205..802831	-	208	76817846	-	BURPS1710b_A0610	-	LysE family protein
611	 63.43	-1	802905..803429	+	174	76818463	-	BURPS1710b_A0611	-	AsnC family transcriptional regulator
612	 72.59	0	803746..804150	+	134	76818630	-	BURPS1710b_A0612	-	hypothetical protein
613	 69.50	0	804528..806114	+	528	76817529	-	BURPS1710b_A0613	-	phosphate transporter family protein
614	 70.40	0	806087..807211	-	374	76819756	-	BURPS1710b_A0614	-	hypothetical protein
615	 69.73	0	806264..807046	+	260	76818003	-	BURPS1710b_A0615	-	hypothetical protein
616	 69.29	0	807410..809236	+	608	76817551	-	BURPS1710b_A0616	-	AMP-binding domain-containing protein
617	 64.94	0	810004..810696	+	230	76818021	-	BURPS1710b_A0617	-	LuxR family transcriptional regulator
618	 70.80	0	810759..811628	+	289	76819605	cepI	BURPS1710b_A0618	-	N-acylhomoserine lactone synthase
619	 68.48	0	811970..813295	+	441	76817863	noxB	BURPS1710b_A0619	-	oxidoreductase, FAD/FMN-binding
620	 70.60	0	813641..814402	-	253	76817512	tauC	BURPS1710b_A0620	-	permease component of taurine ABC transporter
621	 69.99	0	814495..815277	-	260	76818350	tauB	BURPS1710b_A0621	-	taurine ABC transporter, ATP-binding protein
622	 70.03	0	815298..816308	-	336	76818635	tauA	BURPS1710b_A0622	-	taurine ABC transporter, periplasmic binding protein
623	 68.71	0	816601..817434	+	277	76819379	tauD	BURPS1710b_A0623	-	taurine dioxygenase
624	 70.00	0	817688..817897	-	69	76819037	-	BURPS1710b_A0624	-	hypothetical protein
625	 69.43	0	817879..819435	-	518	76819795	-	BURPS1710b_A0625	-	hypothetical protein
626	 71.35	0	819469..822009	-	846	76817627	bcsA	BURPS1710b_A0626	-	glycosyl transferase, group 2 family protein
627	 73.45	+1	819472..824838	+	1788	76817713	-	BURPS1710b_A0627	-	hypothetical protein
628	 76.10	+1	822006..822821	-	271	76817265	wssA	BURPS1710b_A0628	-	hypothetical protein
629	 72.30	0	822866..823078	-	70	76819148	-	BURPS1710b_A0629	-	hypothetical protein
630	 75.56	+1	823075..825402	-	775	76819741	-	BURPS1710b_A0630	-	hypothetical protein
631	 76.18	+1	825332..829978	-	1548	76817502	bcsC	BURPS1710b_A0631	-	cellulose synthase operon protein C
632	 76.46	+1	829945..831465	-	506	76817333	bcsZ	BURPS1710b_A0632	-	endo-1,4-D-glucanase
633	 72.42	0	831470..833866	-	798	162210116	bcsB	BURPS1710b_A0633	-	cellulose synthase regulator protein
634	 70.52	0	834824..836692	+	622	76819740	hipA	BURPS1710b_A0635	-	hipA protein
635	 73.24	+1	834933..835343	+	136	76819176	-	BURPS1710b_A0634	-	HipB domain-containing protein
636	 71.03	0	835450..838659	+	1069	76818916	-	BURPS1710b_A0637	-	hypothetical protein
637	 69.98	0	836827..837279	-	150	76818447	-	BURPS1710b_A0636	-	hypothetical protein
638	 70.49	0	837682..838596	-	304	76819528	-	BURPS1710b_A0638	-	LysR family transcriptional regulator
639	 71.17	0	838763..839716	+	317	76818193	-	BURPS1710b_A0639	-	agmatinase, putative
640	 70.38	0	839541..841883	-	780	76818210	-	BURPS1710b_A0640	-	hypothetical protein
641	 69.06	0	839802..841727	+	641	76817467	-	BURPS1710b_A0641	-	hypothetical protein
642	 63.50	-1	842833..844095	+	420	76819201	-	BURPS1710b_A0642	-	transposase
643	 64.04	-1	844134..844475	-	113	76818529	-	BURPS1710b_A0643	-	hypothetical protein
644	 69.12	0	844479..846026	+	515	76819354	-	BURPS1710b_A0645	-	hypothetical protein
645	 68.66	0	844555..845355	+	266	76818538	-	BURPS1710b_A0644	-	hypothetical protein
646	 70.34	0	845431..845838	+	135	76817796	-	BURPS1710b_A0646	-	hypothetical protein
68.61	MEAN

4.48	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.