IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1710b



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.61 STD DEV: 4.48
Burkholderia pseudomallei 1710b chromosome II, complete sequence - 1..3181762
2611 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2512	 69.38	0	3038921..3040801	+	626	76818937	-	BURPS1710b_A2521	-	hypothetical protein
2513	 69.71	0	3039770..3040723	-	317	76817794	-	BURPS1710b_A2522	-	alpha/beta fold family hydrolase
2514	 63.83	-1	3040735..3041649	-	304	76819663	-	BURPS1710b_A2523	-	hypothetical protein
2515	 67.64	0	3041646..3042572	-	308	76819734	-	BURPS1710b_A2524	-	short chain dehydrogenase
2516	 70.59	0	3042520..3042672	+	50	76818288	-	BURPS1710b_A2525	-	hypothetical protein
2517	 65.78	0	3042600..3044174	-	524	76818671	-	BURPS1710b_A2526	-	flavin-binding monooxygenase-like protein
2518	 72.96	0	3044435..3045085	-	216	76817583	-	BURPS1710b_A2527	-	hypothetical protein
2519	 69.41	0	3045307..3046290	-	327	76819225	ssuA2	BURPS1710b_A2528	-	aliphatic compound ABC transporter, periplasmic substrate-binding protein
2520	 67.95	0	3046428..3047285	-	285	76818656	-	BURPS1710b_A2529	-	MerR family transcriptional regulator
2521	 70.43	0	3047313..3048056	-	247	76819807	pat	BURPS1710b_A2530	-	phosphinothricin N-acetyltransferase
2522	 66.14	0	3047316..3049397	+	693	76817969	-	BURPS1710b_A2532	-	hypothetical protein
2523	 74.56	+1	3048265..3048378	+	37	76817300	-	BURPS1710b_A2531	-	hypothetical protein
2524	 69.62	0	3049432..3050991	-	519	76818719	-	BURPS1710b_A2533	-	EmrB/QacA family drug resistance transporter
2525	 70.33	0	3051185..3052741	+	518	76819664	cheD1	BURPS1710b_A2534	-	methyl-accepting chemotaxis protein
2526	 70.57	0	3052624..3054696	-	690	76818922	-	BURPS1710b_A2535	-	hypothetical protein
2527	 69.43	0	3053001..3054665	-	554	76817775	-	BURPS1710b_A2536	-	hypothetical protein
2528	 69.33	0	3054689..3056188	+	499	76819151	-	BURPS1710b_A2537	-	hypothetical protein
2529	 67.25	0	3055307..3056161	-	284	76818442	-	BURPS1710b_A2538	-	hypothetical protein
2530	 71.71	0	3056394..3057722	+	442	76819423	agaE	BURPS1710b_A2539	-	agaE protein
2531	 66.94	0	3057999..3059108	+	369	76817318	-	BURPS1710b_A2540	-	TrkA domain-containing protein
2532	 71.69	0	3059176..3060111	-	311	76818191	-	BURPS1710b_A2541	-	alpha/beta fold family hydrolase
2533	 69.17	0	3060441..3060839	+	132	76819716	pcaC	BURPS1710b_A2542	-	4-carboxymuconolactone decarboxylase
2534	 74.21	+1	3061440..3062552	+	370	76817557	-	BURPS1710b_A2543	-	ornithine cyclodeaminase
2535	 70.10	0	3062524..3063396	-	290	76819400	-	BURPS1710b_A2544	-	putative esterase
2536	 69.11	0	3063434..3064741	-	435	76817945	opgC	BURPS1710b_A2545	-	hypothetical protein
2537	 65.37	0	3065021..3066175	+	384	76819753	opcP1	BURPS1710b_A2546	-	outer membrane porin
2538	 68.00	0	3065970..3067688	-	572	76819038	-	BURPS1710b_A2547	-	hypothetical protein
2539	 66.89	0	3066677..3067588	-	303	76817618	-	BURPS1710b_A2548	-	LysR family transcriptional regulator
2540	 56.19	-2	3067750..3067854	+	34	76819695	-	BURPS1710b_A2549	-	hypothetical protein
2541	 70.82	0	3067781..3070381	-	866	76818372	-	BURPS1710b_A2552	-	hypothetical protein
2542	 57.82	-2	3068012..3068158	+	48	76817515	-	BURPS1710b_A2550	-	hypothetical protein
2543	 73.52	+1	3068204..3069151	+	315	76818068	nlpD	BURPS1710b_A2551	-	peptidase
2544	 70.43	0	3069284..3070213	+	309	76819356	-	BURPS1710b_A2553	-	beta-lactamase
2545	 75.07	+1	3070378..3070722	-	114	76817307	-	BURPS1710b_A2554	-	hypothetical protein
2546	 68.08	0	3070824..3071816	+	330	76817855	gcvA	BURPS1710b_A2555	-	LysR family transcriptional regulator
2547	 68.15	0	3071926..3072261	-	111	76818465	-	BURPS1710b_A2556	-	hypothetical protein
2548	 71.10	0	3073115..3073903	-	262	76819727	-	BURPS1710b_A2557	-	ABC transporter system, ATP-binding protein
2549	 73.02	0	3073879..3074760	-	293	76817666	-	BURPS1710b_A2558	-	ABC transporter, ATP-binding protein
2550	 70.30	0	3074759..3076987	+	742	76818876	-	BURPS1710b_A2560	-	hypothetical protein
2551	 72.61	0	3074762..3075703	-	313	76818226	-	BURPS1710b_A2559	-	putative dipeptide transport system permease protein
2552	 69.75	0	3075746..3076816	-	356	76817826	-	BURPS1710b_A2561	-	ABC transporter, permease protein
2553	 65.92	0	3076837..3078438	-	533	76819610	dppA2	BURPS1710b_A2562	-	periplasmic solute-binding protein
2554	 69.82	0	3078587..3079156	-	189	76819283	vanX	BURPS1710b_A2563	-	D-alanyl-D-alanine dipeptidase
2555	 69.56	0	3079113..3080081	+	322	76818140	-	BURPS1710b_A2564	-	hypothetical protein
2556	 69.58	0	3079176..3080066	-	296	76818579	-	BURPS1710b_A2565	-	hypothetical protein
2557	 78.19	+2	3080179..3080421	+	80	76817446	-	BURPS1710b_A2566	-	hypothetical protein
2558	 70.67	0	3081059..3082207	-	382	76819505	-	BURPS1710b_A2567	-	hypothetical protein
2559	 64.05	-1	3082560..3084545	+	661	76818112	-	BURPS1710b_A2568	-	Rhs element Vgr protein
2560	 64.90	0	3084568..3085077	+	169	76818528	-	BURPS1710b_A2569	-	hypothetical protein
2561	 67.01	0	3085129..3089754	+	1541	76819783	-	BURPS1710b_A2570	-	YD repeat-containing protein
2562	 56.67	-2	3089761..3090240	+	159	76817569	-	BURPS1710b_A2571	-	hypothetical protein
2563	 71.68	0	3091289..3094678	+	1129	76818314	-	BURPS1710b_A2572	-	serine protease
2564	 68.94	0	3094790..3095404	+	204	76818740	-	BURPS1710b_A2573	-	hypothetical protein
2565	 65.66	0	3095600..3097192	-	530	76818567	-	BURPS1710b_A2574	-	solute-binding family 5 protein
2566	 67.06	0	3097484..3098740	+	418	76818513	-	BURPS1710b_A2575	-	cupin family protein
2567	 71.26	0	3098819..3100168	+	449	76817461	-	BURPS1710b_A2576	-	manganese/iron transporter
2568	 66.39	0	3100614..3101684	-	356	76819291	-	BURPS1710b_A2577	-	YiaAB two helix domain-containing protein
2569	 68.87	0	3101315..3102223	-	302	76818201	-	BURPS1710b_A2578	-	hypothetical protein
2570	 68.44	0	3102236..3104710	-	824	76817455	-	BURPS1710b_A2579	-	oxidoreductase alpha (molybdopterin) subunit
2571	 69.03	0	3104676..3106157	+	493	76817614	-	BURPS1710b_A2580	-	GntR family regulatory protein
2572	 77.14	+1	3106168..3106587	+	139	76818520	-	BURPS1710b_A2581	-	hypothetical protein
2573	 68.68	0	3106746..3107489	-	247	76818598	-	BURPS1710b_A2582	-	hypothetical protein
2574	 66.95	0	3107565..3110351	-	928	76819326	mgtA	BURPS1710b_A2583	-	magnesium-translocating P-type ATPase
2575	 71.38	0	3110249..3111838	+	529	76818757	-	BURPS1710b_A2584	-	putative ribonuclease E
2576	 70.86	0	3111091..3112782	-	563	76818006	-	BURPS1710b_A2585	-	peptidase
2577	 74.56	+1	3113099..3113326	+	75	76818915	-	BURPS1710b_A2586	-	hypothetical protein
2578	 66.67	0	3113469..3113567	-	32	76819669	-	BURPS1710b_A2587	-	hypothetical protein
2579	 68.60	0	3114257..3114772	+	171	76818370	-	BURPS1710b_A2588	-	Tat pathway signal sequence domain-containing protein
2580	 65.24	0	3114772..3116385	+	537	76819092	-	BURPS1710b_A2589	-	glucose dehydrogenase
2581	 69.21	0	3116250..3117743	+	497	76819197	-	BURPS1710b_A2590	-	cytochrome c family protein
2582	 65.08	0	3117845..3118348	+	167	76817803	-	BURPS1710b_A2591	-	DoxD-like family protein
2583	 66.22	0	3118401..3119516	+	371	76818094	-	BURPS1710b_A2592	-	outer membrane porin protein
2584	 63.31	-1	3119715..3120518	-	267	76818679	-	BURPS1710b_A2593	-	hypothetical protein
2585	 66.30	0	3120475..3122385	+	636	76817664	hisM	BURPS1710b_A2594	-	histidine transport system permease protein
2586	 66.02	0	3122454..3123221	+	255	76819149	hisP	BURPS1710b_A2595	-	histidine transport ATP-binding protein
2587	 67.12	0	3123286..3124839	-	517	76819696	-	BURPS1710b_A2596	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase, putative
2588	 68.28	0	3124838..3125332	+	164	76819168	-	BURPS1710b_A2597	-	hypothetical protein
2589	 70.80	0	3125586..3126335	+	249	76819773	-	BURPS1710b_A2598	-	hypothetical protein
2590	 67.83	0	3126453..3126797	-	114	76819837	-	BURPS1710b_A2599	-	hypothetical protein
2591	 71.71	0	3127462..3128709	+	415	76817564	spcT	BURPS1710b_A2600	-	hypothetical protein
2592	 71.44	0	3128754..3129779	-	341	76818291	-	BURPS1710b_A2601	-	hypothetical protein
2593	 71.46	0	3130374..3130895	+	173	76818729	-	BURPS1710b_A2602	-	histidine kinase
2594	 69.95	0	3130897..3131628	+	243	76819475	-	BURPS1710b_A2603	-	response regulator
2595	 66.08	0	3131925..3133460	+	511	76817257	katB	BURPS1710b_A2604	-	catalase
2596	 70.93	0	3133877..3135376	-	499	76817824	-	BURPS1710b_A2605	-	hypothetical protein
2597	 67.88	0	3135524..3137083	-	519	76818300	hrpB	BURPS1710b_A2606	-	AraC family transcriptional regulator
2598	 64.48	0	3137250..3138254	-	334	76818870	-	BURPS1710b_A2607	-	Rieske family iron-sulfur cluster-binding protein
2599	 67.05	0	3138420..3140225	-	601	76819571	-	BURPS1710b_A2608	-	TPR domain-containing protein
2600	 70.92	0	3140141..3141385	-	414	76817403	pksF	BURPS1710b_A2609	-	polyketide beta-ketoacyl:acyl carrier protein synthase
2601	 60.00	-1	3141372..3141611	-	79	76818213	-	BURPS1710b_A2610	-	acyl carrier protein
2602	 65.26	0	3141665..3142447	-	260	76818897	-	BURPS1710b_A2611	-	polyketide biosynthesis enoyl-CoA hydratase
2603	 65.77	0	3142448..3143224	-	258	76817751	pksH	BURPS1710b_A2612	-	polyketide biosynthesis enoyl-CoA hydratase
2604	 64.13	-1	3143212..3144471	-	419	76819825	-	BURPS1710b_A2613	-	putative hydroxymethylglutaryl-coenzyme A synthase
2605	 63.50	-1	3145748..3147010	-	420	76818568	-	BURPS1710b_A2615	-	transposase
2606	 68.29	0	3147326..3148498	-	390	76818102	pedD	BURPS1710b_A2616	-	malonyl CoA-acyl carrier protein transacylase
2607	 64.14	0	3148884..3150662	-	592	76819397	-	BURPS1710b_A2617	-	sodium/hydrogen exchanger
2608	 73.33	+1	3150670..3164289	+	4539	76819270	onnB	BURPS1710b_A2618	-	OnnB
2609	 72.41	0	3164279..3169138	+	1619	76818556	-	BURPS1710b_A2619	-	beta-ketoacyl synthase domain-containing protein
2610	 83.33	+2	3171140..3171355	-	71	76818453	-	BURPS1710b_A2620	-	hypothetical protein
2611	 85.42	+2	3179171..3179266	-	31	76819584	-	BURPS1710b_A2622	-	hypothetical protein
68.61	MEAN

4.48	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.