IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1710b



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.61 STD DEV: 4.48
Burkholderia pseudomallei 1710b chromosome II, complete sequence - 1..3181762
2611 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
207	 68.73	0	310141..312906	-	921	76818982	-	BURPS1710b_A0207	-	Rhs element Vgr protein
208	 60.13	-1	313227..313532	-	101	76817372	bprA	BURPS1710b_A0208	-	H-NS histone family protein
209	 45.28	-2	315069..316349	+	426	76818468	proP7	BURPS1710b_A0209	-	putative sugar transporter
210	 55.24	-2	316346..316984	+	212	76818927	thiE2	BURPS1710b_A0210	-	dGTP-pyrophosphohydrolase; thiamine phosphate synthase
211	 74.06	+1	317812..318852	+	346	76818508	-	BURPS1710b_A0211	-	hypothetical protein
212	 68.60	0	319948..321342	+	464	76817773	-	BURPS1710b_A0212	-	methyl-accepting chemotaxis protein
213	 68.07	0	321959..323743	+	594	76817761	ftsI	BURPS1710b_A0213	-	penicillin-binding protein
214	 67.98	0	323769..325139	+	456	76819353	-	BURPS1710b_A0214	-	L-arabinose ABC transporter, periplasmic L-arabinose-binding protein
215	 70.96	0	325204..325971	+	255	76818619	-	BURPS1710b_A0215	-	short chain dehydrogenase
216	 60.41	-1	327192..328469	+	425	76817920	-	BURPS1710b_A0216	-	putative surface layer protein
217	 62.47	-1	328507..329937	+	476	76819497	-	BURPS1710b_A0217	-	hypothetical protein
218	 66.25	0	330136..331104	+	322	76818772	ispA	BURPS1710b_A0218	-	geranyltranstransferase
219	 62.53	-1	331142..332326	+	394	76817700	-	BURPS1710b_A0219	-	terpene synthase family protein
220	 70.64	0	332689..334776	-	695	76819507	-	BURPS1710b_A0220	-	potassium-efflux system protein
221	 66.21	0	335268..336572	+	434	76819136	-	BURPS1710b_A0221	-	hypothetical protein
222	 68.39	0	336673..338646	+	657	76818415	-	BURPS1710b_A0222	-	hypothetical protein
223	 70.87	0	338660..339016	+	118	76817996	-	BURPS1710b_A0223	-	hypothetical protein
224	 71.97	0	339276..339539	+	87	76817274	-	BURPS1710b_A0224	-	hypothetical protein
225	 68.26	0	339697..341457	-	586	76818964	-	BURPS1710b_A0225	-	3-demethylubiquinone-9 3-methyltransferase family protein
226	 67.85	0	340326..341336	-	336	76819518	-	BURPS1710b_A0226	-	CorA family protein
227	 71.73	0	341703..342650	+	315	76817843	-	BURPS1710b_A0227	-	DeoR family transcriptional regulator
228	 73.35	+1	342684..343820	+	378	76818436	-	BURPS1710b_A0228	-	putative transport protein
229	 69.00	0	344201..344671	-	156	76818639	-	BURPS1710b_A0229	-	hypothetical protein
230	 69.01	0	345442..346722	+	426	76817686	-	BURPS1710b_A0230	-	putative transporter periplasmic binding protein
231	 66.21	0	346857..347735	+	292	76819255	-	BURPS1710b_A0231	-	sugar ABC transporter, permease protein
232	 69.55	0	347552..349561	-	669	76818686	-	BURPS1710b_A0233	-	hypothetical protein
233	 68.88	0	347723..348535	+	270	76817653	-	BURPS1710b_A0232	-	putative ABC transporter permease protein
234	 70.43	0	348557..349591	+	344	76818471	-	BURPS1710b_A0234	-	zinc-binding dehydrogenase family oxidoreductase
235	 72.28	0	349595..350788	+	397	76819573	-	BURPS1710b_A0235	-	sugar ABC transporter, ATP-binding protein
236	 69.22	0	350827..351846	+	339	76817450	-	BURPS1710b_A0236	-	AraC family transcriptional regulator
237	 73.65	+1	351843..353303	+	486	76818185	xylB	BURPS1710b_A0237	-	xylulokinase
238	 72.26	0	353920..354921	+	333	76818571	dac	BURPS1710b_A0238	-	peptidase
239	 74.24	+1	355141..356988	+	615	76818629	ftsI	BURPS1710b_A0239	-	penicillin-binding protein
240	 81.28	+2	357374..357592	-	72	76818054	-	BURPS1710b_A0240	-	hypothetical protein
241	 71.84	0	357573..361769	-	1398	76818924	fdhF	BURPS1710b_A0241	-	FdhF
242	 69.23	0	361813..362163	-	116	76819803	nirD	BURPS1710b_A0242	-	nitrite reductase (NAD(P)H), small subunit
243	 69.76	0	362201..364756	-	851	76817608	nirB	BURPS1710b_A0243	-	nitrite reductase (NAD(P)H), large subunit
244	 71.04	0	364800..366125	-	441	76818357	-	BURPS1710b_A0244	-	nitrate transporter
245	 73.31	+1	366907..367929	+	340	76818114	cobA-2	BURPS1710b_A0245	-	uroporphyrin-III C-methyltransferase
246	 70.85	0	368031..368627	+	198	76818547	nasT	BURPS1710b_A0246	-	response regulator NasT
247	 71.94	0	368645..369706	+	353	76819286	-	BURPS1710b_A0247	-	nitrate transport ATP-binding protein
248	 67.46	0	369990..370622	-	210	76818551	folE	BURPS1710b_A0248	-	GTP cyclohydrolase I
249	 69.79	0	371896..374427	+	843	76818391	-	BURPS1710b_A0249	-	putative lipoprotein
250	 70.38	0	374971..375993	-	340	76817612	aphA	BURPS1710b_A0250	-	acetylpolyamine aminohydrolase
251	 70.55	0	375976..378858	+	960	76818595	rne	BURPS1710b_A0252	-	ribonuclease E
252	 74.06	+1	376024..377403	-	459	76819728	amaB-2	BURPS1710b_A0251	-	allantoate amidohydrolase
253	 69.44	0	377428..378762	-	444	76819297	-	BURPS1710b_A0253	-	major facilitator family transporter
254	 63.89	-1	378918..379889	+	323	76818163	-	BURPS1710b_A0254	-	LysR family transcriptional regulator
255	 72.92	0	380533..381540	-	335	76817440	-	BURPS1710b_A0255	-	LysR family transcriptional regulator
256	 72.58	0	381664..382407	+	247	76818126	-	BURPS1710b_A0256	-	short chain dehydrogenase
257	 75.41	+1	382717..384135	-	472	76817402	caiB	BURPS1710b_A0257	-	CAIB/BAIF family CoA transferase
258	 74.02	+1	384762..385169	+	135	76819619	-	BURPS1710b_A0258	-	hypothetical protein
259	 70.04	0	385166..386203	-	345	76819636	-	BURPS1710b_A0259	-	alcohol dehydrogenase, zinc-containing
260	 70.56	0	386268..387833	-	521	76819295	-	BURPS1710b_A0260	-	alcohol dehydrogenase, iron-containing
261	 69.14	0	387883..388044	-	53	76819154	-	BURPS1710b_A0261	-	hypothetical protein
262	 69.18	0	388934..391123	+	729	76818138	-	BURPS1710b_A0262	-	hypothetical protein
263	 70.27	0	391358..391690	-	110	76817277	-	BURPS1710b_A0263	-	hypothetical protein
264	 72.70	0	391765..392742	+	325	76819452	-	BURPS1710b_A0264	-	hypothetical protein
265	 70.29	0	392306..395149	-	947	76817410	-	BURPS1710b_A0265	-	hypothetical protein
266	 70.20	0	392753..395329	+	858	76818217	-	BURPS1710b_A0266	-	hypothetical protein
267	 68.83	0	395326..395973	+	215	76817712	-	BURPS1710b_A0267	-	hypothetical protein
268	 72.38	0	395957..396814	+	285	76817738	-	BURPS1710b_A0268	-	hypothetical protein
269	 72.79	0	397100..400348	-	1082	76819660	dhbF	BURPS1710b_A0269	-	nonribosomal peptide synthetase DhbF
270	 70.53	0	400395..400601	-	68	76818578	-	BURPS1710b_A0270	-	mbtH-like protein-related protein
271	 73.72	+1	400620..401909	-	429	76818151	-	BURPS1710b_A0271	-	major facilitator transporter
272	 72.48	0	401914..414633	-	4239	76818390	-	BURPS1710b_A0272	-	thiotemplate mechanism natural product synthetase
273	 64.75	0	414683..415570	-	295	76819278	-	BURPS1710b_A0273	-	hypothetical protein
274	 67.29	0	416016..416336	-	106	76819647	-	BURPS1710b_A0274	-	phosphopantetheine attachment site domain-containing protein
275	 71.57	0	416317..419886	-	1189	76818929	-	BURPS1710b_A0275	-	acyl-CoA dehydrogenase domain-containing protein
276	 69.90	0	418107..419867	-	586	76818128	-	BURPS1710b_A0276	-	acyl-CoA dehydrogenase domain-containing protein
277	 69.78	0	419864..421663	-	599	76817671	-	BURPS1710b_A0277	-	AMP-binding domain-containing protein
278	 64.89	0	422311..422817	+	168	76819323	rpoE6	BURPS1710b_A0278	-	ECF subfamily RNA polymerase sigma factor
279	 70.18	0	423259..424170	+	303	76817975	-	BURPS1710b_A0279	-	hypothetical protein
280	 73.38	+1	424186..425376	+	396	76819461	cnrT	BURPS1710b_A0280	-	membrane protein
281	 74.67	+1	425505..425729	-	74	76817436	-	BURPS1710b_A0281	-	hypothetical protein
282	 71.78	0	426122..430051	-	1309	76818984	-	BURPS1710b_A0283	-	putative oxidoreductase
283	 73.92	+1	427499..428215	+	238	76819786	-	BURPS1710b_A0282	-	TetR family regulatory protein
284	 69.28	0	428194..429801	-	535	76819550	ilvA	BURPS1710b_A0284	-	threonine dehydratase
285	 63.95	-1	430211..430468	+	85	76817756	-	BURPS1710b_A0285	-	hypothetical protein
286	 69.39	0	430555..432096	-	513	76818401	-	BURPS1710b_A0286	-	polyphosphate kinase 2 family protein
287	 72.43	0	431964..433751	+	595	76818240	-	BURPS1710b_A0287	-	hypothetical protein
288	 72.14	0	432144..433640	-	498	76818628	-	BURPS1710b_A0288	-	putative lipoprotein
289	 66.01	0	433630..436053	+	807	76817292	-	BURPS1710b_A0290	-	hypothetical protein
290	 63.58	-1	433654..434949	-	431	76817540	-	BURPS1710b_A0289	-	secretion protein, putative
291	 68.59	0	434876..436021	+	381	76818020	-	BURPS1710b_A0292	-	hypothetical protein
292	 68.63	0	434962..435876	-	304	76817769	-	BURPS1710b_A0291	-	hypothetical protein
293	 64.41	0	435981..438104	-	707	76819311	-	BURPS1710b_A0293	-	peptidase
294	 59.32	-2	438241..438594	-	117	76819445	-	BURPS1710b_A0294	-	hypothetical protein
295	 63.22	-1	438673..438846	-	57	76819602	-	BURPS1710b_A0295	-	hypothetical protein
296	 65.62	0	439125..440555	+	476	76818773	-	BURPS1710b_A0296	-	outer membrane protein TolC, putative
297	 67.82	0	440629..443142	-	837	76819428	-	BURPS1710b_A0299	-	hypothetical protein
298	 66.55	0	440796..442517	-	573	76817259	ggt	BURPS1710b_A0297	-	gamma-glutamyltransferase
299	 65.71	0	441000..442574	+	524	76819335	-	BURPS1710b_A0298	-	hypothetical protein
300	 74.57	+1	443430..443948	+	172	76818618	-	BURPS1710b_A0300	-	hypothetical protein
301	 71.37	0	444024..444809	+	261	76818175	-	BURPS1710b_A0301	-	hypothetical protein
302	 59.18	-2	444867..445133	+	88	76817862	-	BURPS1710b_A0302	-	hypothetical protein
303	 57.02	-2	444989..445102	-	37	76817443	-	BURPS1710b_A0303	-	hypothetical protein
304	 75.05	+1	445144..450246	+	1700	76819760	-	BURPS1710b_A0304	-	DEAD-box ATP dependent DNA helicase
305	 74.48	+1	450314..450505	+	63	76818797	-	BURPS1710b_A0305	-	hypothetical protein
306	 77.63	+2	450334..450561	-	75	76819362	-	BURPS1710b_A0306	-	hypothetical protein
68.61	MEAN

4.48	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.