IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1710b



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.61 STD DEV: 4.48
Burkholderia pseudomallei 1710b chromosome II, complete sequence - 1..3181762
2611 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2410	 64.01	-1	2935040..2936848	+	602	76818611	-	BURPS1710b_A2419	-	peptidase
2411	 67.55	0	2937137..2937475	-	112	76818624	-	BURPS1710b_A2420	-	hypothetical protein
2412	 68.21	0	2938128..2939294	-	388	162210113	-	BURPS1710b_A2421	-	putative monooxygenase
2413	 62.44	-1	2939421..2939633	-	70	76818682	-	BURPS1710b_A2422	-	hypothetical protein
2414	 67.61	0	2939892..2940635	-	247	76817641	-	BURPS1710b_A2423	-	DNA-binding protein
2415	 64.02	-1	2941007..2941195	+	62	76817559	-	BURPS1710b_A2424	-	hypothetical protein
2416	 68.55	0	2941412..2942422	+	336	76819732	-	BURPS1710b_A2426	-	hypothetical protein
2417	 69.70	0	2941454..2941981	-	175	76819184	-	BURPS1710b_A2425	-	hypothetical protein
2418	 69.38	0	2942806..2943654	-	282	76817367	vsrD	BURPS1710b_A2427	-	LuxR family DNA-binding response regulator
2419	 70.31	0	2943898..2944473	+	191	76817942	-	BURPS1710b_A2428	-	universal stress protein
2420	 72.76	0	2944843..2945679	-	278	76817329	-	BURPS1710b_A2429	-	universal stress protein family protein
2421	 73.33	+1	2945679..2946173	-	164	76819817	-	BURPS1710b_A2430	-	universal stress protein
2422	 70.24	0	2946355..2947194	-	279	76817965	-	BURPS1710b_A2431	-	universal stress protein family protein
2423	 69.07	0	2947444..2948484	+	346	76818698	-	BURPS1710b_A2432	-	alcohol dehydrogenase, zinc-containing
2424	 72.26	0	2948818..2951550	-	910	76819440	-	BURPS1710b_A2434	-	200 kDa antigen p200, putative
2425	 70.43	0	2948887..2949975	+	362	76817584	-	BURPS1710b_A2433	-	dedA family protein
2426	 72.18	0	2950030..2951370	+	446	76817454	-	BURPS1710b_A2435	-	major facilitator superfamily protein
2427	 71.79	0	2951692..2952570	+	292	76818921	-	BURPS1710b_A2436	-	short chain dehydrogenase/reductase family oxidoreductase
2428	 72.76	0	2951812..2953353	-	513	76819673	-	BURPS1710b_A2437	-	hypothetical protein
2429	 71.61	0	2952586..2953455	+	289	76818461	-	BURPS1710b_A2438	-	methyltransferase CmcJ
2430	 67.30	0	2953951..2954268	-	105	76818000	-	BURPS1710b_A2439	-	hypothetical protein
2431	 66.16	0	2954454..2955839	+	461	76818643	proY	BURPS1710b_A2440	-	amino acid permease
2432	 58.02	-2	2956393..2956635	-	80	76819198	-	BURPS1710b_A2441	-	DNA-binding protein
2433	 59.60	-2	2956681..2957076	+	131	76817520	bprA	BURPS1710b_A2442	-	H-NS histone family protein
2434	 71.07	0	2957470..2958786	-	438	76818122	-	BURPS1710b_A2443	-	acyl-CoA dehydrogenase domain-containing protein
2435	 68.21	0	2958779..2960524	+	581	76819193	-	BURPS1710b_A2445	-	hypothetical protein
2436	 68.57	0	2959208..2959786	-	192	76819008	-	BURPS1710b_A2444	-	hypothetical protein
2437	 63.28	-1	2959823..2960707	-	294	76818454	-	BURPS1710b_A2446	-	hypothetical protein
2438	 68.81	0	2961093..2961698	+	201	76817260	-	BURPS1710b_A2447	-	hypothetical protein
2439	 71.77	0	2961722..2963209	+	495	76818817	-	BURPS1710b_A2448	-	putative nitrilotriacetate monooxygenase component A
2440	 71.96	0	2961857..2963329	-	490	76818187	-	BURPS1710b_A2449	-	hypothetical protein
2441	 71.87	0	2963351..2964676	+	441	76817298	-	BURPS1710b_A2450	-	inosine-uridine preferring nucleoside hydrolase
2442	 69.18	0	2964700..2965734	-	344	76819264	rbsK	BURPS1710b_A2451	-	ribokinase
2443	 70.58	0	2965678..2966418	+	246	76817473	-	BURPS1710b_A2452	-	hypothetical protein
2444	 71.56	0	2966637..2968331	+	564	76818493	-	BURPS1710b_A2453	-	Uvs005
2445	 71.93	0	2968355..2970595	+	746	76819115	-	BURPS1710b_A2454	-	Uvs006
2446	 72.13	0	2970696..2971922	+	408	76819631	atcB	BURPS1710b_A2455	-	L-2-amino-thiazoline-4-carboxylic acid hydrolase
2447	 71.89	0	2971950..2972657	+	235	76817741	amaB	BURPS1710b_A2456	-	N-carbamoyl-L-cysteine amidohydrolase
2448	 66.67	0	2972697..2974220	+	507	76818743	fliD-2	BURPS1710b_A2457	-	flagellar hook-associated protein 2
2449	 71.33	0	2974617..2975516	-	299	76819501	-	BURPS1710b_A2458	-	LysR family transcriptional regulator
2450	 68.31	0	2975523..2976314	-	263	76818770	-	BURPS1710b_A2459	-	hypothetical protein
2451	 72.71	0	2975631..2976308	+	225	76817852	-	BURPS1710b_A2460	-	protein-disulfide isomerase
2452	 68.61	0	2976347..2977738	+	463	76819813	mocA	BURPS1710b_A2461	-	aldo/keto reductase family oxidoreductase
2453	 69.90	0	2977620..2978981	-	453	76817593	-	BURPS1710b_A2462	-	hypothetical protein
2454	 68.63	0	2978130..2978996	+	288	76818713	-	BURPS1710b_A2463	-	MoaF
2455	 75.90	+1	2978993..2979826	+	277	76818301	-	BURPS1710b_A2464	-	3-ketoacyl-(acyl-carrier-protein) reductase
2456	 71.05	0	2980218..2981039	+	273	76819404	-	BURPS1710b_A2465	-	LuxR family transcriptional regulator
2457	 70.99	0	2981296..2982798	+	500	76818826	feaB	BURPS1710b_A2466	-	phenylacetaldehyde dehydrogenase
2458	 67.63	0	2982836..2984185	+	449	76819109	-	BURPS1710b_A2467	-	hypothetical protein
2459	 69.01	0	2984394..2985884	+	496	76817397	-	BURPS1710b_A2468	-	amino acid permease
2460	 75.36	+1	2985881..2986501	+	206	76818457	-	BURPS1710b_A2469	-	hypothetical protein
2461	 69.12	0	2986579..2987517	+	312	76818378	-	BURPS1710b_A2470	-	AraC family transcription regulator
2462	 65.25	0	2987747..2988949	+	400	76818423	-	BURPS1710b_A2471	-	outer membrane porin
2463	 68.46	0	2989639..2990250	-	203	76818991	-	BURPS1710b_A2472	-	LysE family protein
2464	 69.18	0	2990305..2990901	+	198	76819557	-	BURPS1710b_A2473	-	acetyltransferase
2465	 70.43	0	2991042..2992103	-	353	76817422	nemA	BURPS1710b_A2474	-	N-ethylmaleimide reductase
2466	 66.67	0	2992153..2992458	-	101	76819759	-	BURPS1710b_A2475	-	ArsR family transcriptional regulator
2467	 62.67	-1	2993787..2994911	+	374	76817896	omp38	BURPS1710b_A2476	-	outer membrane porin precursor
2468	 60.65	-1	2995130..2995528	-	132	76817365	rnk	BURPS1710b_A2477	-	regulator of nucleoside diphosphate kinase
2469	 65.79	0	2996047..2996388	+	113	76819414	-	BURPS1710b_A2478	-	hypothetical protein
2470	 73.12	+1	2996267..2996359	-	30	76819419	-	BURPS1710b_A2479	-	hypothetical protein
2471	 59.14	-2	2996593..2997057	-	154	76818563	-	BURPS1710b_A2480	-	CBS domain-containing protein
2472	 65.32	0	2997222..2997887	+	221	76818001	ribA	BURPS1710b_A2481	-	GTP cyclohydrolase II
2473	 70.80	0	2997850..2998671	-	273	76817275	-	BURPS1710b_A2482	-	hypothetical protein
2474	 68.95	0	2998760..2999371	-	203	76818733	pmlI	BURPS1710b_A2483	-	N-acylhomoserine lactone synthase
2475	 67.12	0	2999596..3000039	-	147	76819431	-	BURPS1710b_A2484	-	hypothetical protein
2476	 64.03	-1	3000113..3000832	+	239	76818142	bpsR	BURPS1710b_A2485	-	BpsR
2477	 65.97	0	3000869..3001585	-	238	76818218	-	BURPS1710b_A2486	-	MgtC family protein
2478	 72.30	0	3002195..3003241	-	348	76818948	-	BURPS1710b_A2487	-	calcineurin-like phosphoesterase
2479	 65.81	0	3003463..3004047	-	194	76819847	-	BURPS1710b_A2488	-	hypothetical protein
2480	 71.45	0	3004180..3004806	+	208	76818376	-	BURPS1710b_A2489	-	2OG-Fe(II) oxygenase superfamily protein
2481	 69.72	0	3004893..3005843	+	316	76819186	-	BURPS1710b_A2490	-	IclR family transcriptional regulator
2482	 66.39	0	3006160..3007248	-	362	76817835	opcP1	BURPS1710b_A2491	-	outer membrane porin protein
2483	 66.35	0	3007683..3008000	+	105	76818431	hcaA12	BURPS1710b_A2492	-	Rieske (2Fe-2S) domain-containing protein
2484	 68.27	0	3008002..3008313	+	103	76818769	-	BURPS1710b_A2493	-	hypothetical protein
2485	 66.67	0	3008348..3009415	+	355	76819609	-	BURPS1710b_A2494	-	Rieske family iron-sulfur cluster-binding protein
2486	 73.15	+1	3009412..3010182	+	256	76817308	-	BURPS1710b_A2495	-	short chain dehydrogenase
2487	 64.96	0	3010221..3010748	+	175	76818211	-	BURPS1710b_A2496	-	hypothetical protein
2488	 74.83	+1	3010765..3011670	+	301	76818580	-	BURPS1710b_A2497	-	alpha/beta fold family hydrolase
2489	 68.07	0	3011667..3012521	+	284	76819046	-	BURPS1710b_A2498	-	IclR family transcriptional regulator
2490	 68.67	0	3012518..3013315	+	265	76819798	-	BURPS1710b_A2499	-	short chain dehydrogenase
2491	 70.55	0	3013308..3014981	+	557	76817613	-	BURPS1710b_A2500	-	hypothetical protein
2492	 72.18	0	3014974..3015789	+	271	76819815	-	BURPS1710b_A2501	-	L-aspartate dehydrogenase
2493	 70.69	0	3015815..3017305	+	496	76819004	-	BURPS1710b_A2502	-	aldehyde dehydrogenase family protein
2494	 69.25	0	3017322..3018287	+	321	76818110	-	BURPS1710b_A2503	-	glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein
2495	 72.67	0	3018313..3019527	+	404	76819250	mopA	BURPS1710b_A2504	-	pyridine nucleotide-disulfide oxidoreductase, class I
2496	 68.23	0	3019562..3020968	+	468	76818845	-	BURPS1710b_A2505	-	major facilitator family transporter
2497	 70.11	0	3021493..3023988	+	831	76818882	-	BURPS1710b_A2506	-	haemagluttinin family protein
2498	 67.98	0	3024119..3024877	+	252	76818337	plp4	BURPS1710b_A2507	-	OmpA family protein
2499	 64.37	0	3025038..3025472	-	144	76818308	-	BURPS1710b_A2508	-	UspA family protein
2500	 69.90	0	3025865..3027505	+	546	76819364	-	BURPS1710b_A2509	-	amidase
2501	 61.08	-1	3027670..3028152	-	160	76818443	-	BURPS1710b_A2510	-	AsnC family transcriptional regulator
2502	 66.28	0	3028340..3029641	+	433	76817851	-	BURPS1710b_A2511	-	methionine gamma-lyase
2503	 60.44	-1	3029809..3030033	-	74	76819442	-	BURPS1710b_A2512	-	hypothetical protein
2504	 69.52	0	3030470..3031171	+	233	76818557	-	BURPS1710b_A2513	-	hypothetical protein
2505	 66.67	0	3031288..3032160	+	290	76817691	nhoA	BURPS1710b_A2514	-	N-hydroxyarylamine O-acetyltransferase
2506	 68.45	0	3031785..3033017	+	410	76817451	-	BURPS1710b_A2515	-	hypothetical protein
2507	 67.37	0	3033137..3034852	-	571	76819017	-	BURPS1710b_A2516	-	putative DNA-binding protein
2508	 69.85	0	3033728..3034639	+	303	76818489	-	BURPS1710b_A2517	-	pyridine nucleotide-disulphide oxidoreductase class-II
2509	 63.89	-1	3035431..3036366	-	311	76817742	-	BURPS1710b_A2518	-	LysR family regulatory protein
68.61	MEAN

4.48	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.