IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1710b



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.61 STD DEV: 4.48
Burkholderia pseudomallei 1710b chromosome II, complete sequence - 1..3181762
2611 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2344	 71.22	0	2856017..2856499	+	160	76818389	hcaR	BURPS1710b_A2352	-	MarR family regulatory protein
2345	 72.66	0	2856729..2857145	-	138	76819272	gbpR	BURPS1710b_A2353	-	galactose-binding protein regulator
2346	 71.60	0	2857259..2858716	+	485	76817286	araH	BURPS1710b_A2355	-	L-arabinose transport system, permease protein
2347	 66.98	0	2857764..2858087	+	107	76817251	araH	BURPS1710b_A2354	-	high-affinity L-arabinose transport system membrane protein, fragment
2348	 73.40	+1	2858368..2859303	+	311	76818009	-	BURPS1710b_A2356	-	senescence marker protein-30 family protein
2349	 69.07	0	2858586..2860415	+	609	76818965	-	BURPS1710b_A2357	-	hypothetical protein
2350	 66.89	0	2860501..2860941	-	146	76819827	-	BURPS1710b_A2358	-	hypothetical protein
2351	 68.97	0	2861248..2861682	-	144	76817391	-	BURPS1710b_A2359	-	hypothetical protein
2352	 66.30	0	2862736..2863563	+	275	76817931	ech	BURPS1710b_A2361	-	p-hydroxycinnamoyl CoA hydratase/lyase
2353	 74.95	+1	2863730..2865178	+	482	76818884	vdh	BURPS1710b_A2362	-	aldehyde dehydrogenase (NADP) family protein
2354	 72.43	0	2865196..2867052	+	618	76819517	fcs	BURPS1710b_A2363	-	feruloyl-CoA synthase
2355	 74.29	+1	2867374..2868567	+	397	76817814	mhpT	BURPS1710b_A2364	-	putative 3-hydroxyphenylpropionic transporter MhpT
2356	 71.32	0	2868981..2870120	+	379	76817381	-	BURPS1710b_A2365	-	porin
2357	 71.57	0	2870226..2871917	+	563	76818703	hcaG	BURPS1710b_A2366	-	chlorogenate esterase
2358	 69.32	0	2872181..2873083	-	300	76819208	-	BURPS1710b_A2367	-	IclR family transcriptional regulator
2359	 68.15	0	2873194..2874207	+	337	76817507	-	BURPS1710b_A2368	-	sugar ABC transporter, periplasmic sugar-binding protein
2360	 73.67	+1	2874204..2875760	+	518	76819235	rbsA	BURPS1710b_A2369	-	sugar ABC transporter, ATP-binding protein
2361	 72.37	0	2874907..2877099	-	730	76818066	-	BURPS1710b_A2370	-	200 kDa antigen p200, putative
2362	 69.98	0	2875750..2876775	+	341	76818345	-	BURPS1710b_A2371	-	sugar ABC transporter, permease protein
2363	 71.96	0	2876772..2877092	+	106	76819090	-	BURPS1710b_A2372	-	dehydratase; D-galactarate dehydratase; altronate dehydratase
2364	 70.14	0	2877127..2878449	+	440	76818796	uxaA	BURPS1710b_A2373	-	UxaA family hydrolase
2365	 73.45	+1	2878721..2879560	+	279	76819468	-	BURPS1710b_A2374	-	amidohydrolase
2366	 70.36	0	2879624..2881516	+	630	76818632	-	BURPS1710b_A2376	-	hypothetical protein
2367	 70.56	0	2879700..2880443	+	247	76817514	ucpA	BURPS1710b_A2375	-	short chain dehydrogenase/reductase family oxidoreductase
2368	 69.16	0	2880519..2881361	+	280	76817586	mhpD2	BURPS1710b_A2377	-	fumarylacetoacetate (FAA) hydrolase family protein
2369	 68.09	0	2881447..2882289	+	280	76818105	-	BURPS1710b_A2378	-	short chain dehydrogenase
2370	 67.47	0	2882456..2882704	-	82	76817893	-	BURPS1710b_A2379	-	hypothetical protein
2371	 73.71	+1	2882709..2882921	+	70	76818955	-	BURPS1710b_A2380	-	hypothetical protein
2372	 67.49	0	2884833..2889713	+	1626	76817267	-	BURPS1710b_A2381	-	Hep_Hag family protein
2373	 64.33	0	2890594..2890935	-	113	76817770	bphA	BURPS1710b_A2382	-	H-NS histone family protein
2374	 69.70	0	2890946..2891110	+	54	76817654	-	BURPS1710b_A2383	-	hypothetical protein
2375	 67.34	0	2891126..2891866	-	246	76819377	-	BURPS1710b_A2384	-	IclR family transcriptional regulator
2376	 69.76	0	2891981..2892400	-	139	76819150	-	BURPS1710b_A2385	-	hypothetical protein
2377	 68.01	0	2892461..2893504	-	347	76818284	-	BURPS1710b_A2386	-	EAL domain-containing protein
2378	 65.52	0	2894557..2895255	-	232	76819352	-	BURPS1710b_A2387	-	TetR family transcriptional regulator
2379	 64.38	0	2895286..2895723	+	145	76819750	-	BURPS1710b_A2388	-	thioesterase (4HBT) superfamily protein
2380	 66.13	0	2895896..2897014	+	372	76817972	-	BURPS1710b_A2389	-	outative extracellular ligand binding protein
2381	 66.99	0	2897503..2898123	+	206	76818445	-	BURPS1710b_A2390	-	hemolysin III
2382	 70.62	0	2898181..2899167	-	328	76817813	-	BURPS1710b_A2391	-	hypothetical protein
2383	 68.31	0	2899204..2901270	-	688	76819816	-	BURPS1710b_A2392	-	EAL/GGDEF domain-containing protein
2384	 63.68	-1	2901597..2902064	-	155	76818597	-	BURPS1710b_A2393	-	AsnC family transcriptional regulator
2385	 65.22	0	2902397..2903782	+	461	76818007	aroP	BURPS1710b_A2394	-	aromatic amino acid transport protein
2386	 67.75	0	2903814..2905016	+	400	162210106	tyrB1	BURPS1710b_A2395	-	aromatic amino acid aminotransferase
2387	 67.95	0	2905348..2905737	+	129	76818285	-	BURPS1710b_A2396	-	hypothetical protein
2388	 70.03	0	2906495..2907505	+	336	76817709	-	BURPS1710b_A2397	-	acetyltransferase
2389	 65.94	0	2907617..2909821	-	734	76819412	-	BURPS1710b_A2399	-	hypothetical protein
2390	 65.59	0	2907670..2908320	-	216	76818846	-	BURPS1710b_A2398	-	2OG-Fe(II) oxygenase family oxidoreductase
2391	 67.40	0	2908432..2909661	-	409	76818855	-	BURPS1710b_A2400	-	hypothetical protein
2392	 65.00	0	2910231..2910710	+	159	76817574	-	BURPS1710b_A2401	-	hypothetical protein
2393	 75.93	+1	2910856..2911125	+	89	76817546	-	BURPS1710b_A2402	-	hypothetical protein
2394	 68.60	0	2911125..2912930	+	601	76819212	-	BURPS1710b_A2403	-	sensor histidine kinase
2395	 65.04	0	2912941..2913309	+	122	76818754	-	BURPS1710b_A2404	-	response regulator
2396	 69.58	0	2913365..2913913	+	182	76818253	-	BURPS1710b_A2405	-	CheC family protein
2397	 73.84	+1	2913948..2916803	-	951	76817864	pbpC	BURPS1710b_A2406	-	penicillin-binding protein 1C
2398	 73.13	+1	2916811..2923014	-	2067	76817415	-	BURPS1710b_A2407	-	alpha-2-macroglobulin family protein
2399	 56.44	-2	2923187..2924056	+	289	76818961	-	BURPS1710b_A2408	-	hypothetical protein
2400	 72.22	0	2924389..2924964	+	191	76817981	-	BURPS1710b_A2409	-	hypothetical protein
2401	 69.51	0	2925043..2925570	+	175	76819016	-	BURPS1710b_A2410	-	hypothetical protein
2402	 73.42	+1	2925567..2927771	+	734	76817892	leuS	BURPS1710b_A2411	-	leucyl-tRNA synthetase
2403	 71.55	0	2927768..2928688	+	306	76817498	-	BURPS1710b_A2412	-	hypothetical protein
2404	 74.09	+1	2928691..2929593	+	300	76817795	-	BURPS1710b_A2413	-	hypothetical protein
2405	 73.11	+1	2929590..2931203	+	537	76818665	-	BURPS1710b_A2414	-	hypothetical protein
2406	 71.25	0	2931196..2932089	+	297	76817749	tauD	BURPS1710b_A2415	-	TauD/TfdA family dioxygenase
2407	 69.13	0	2932053..2932784	-	243	76818256	-	BURPS1710b_A2416	-	hypothetical protein
2408	 67.01	0	2932772..2933929	+	385	76819600	cefD	BURPS1710b_A2417	-	putative aminotransferase class-V
2409	 70.00	0	2934528..2934767	+	79	76818863	-	BURPS1710b_A2418	-	hypothetical protein
2410	 64.01	-1	2935040..2936848	+	602	76818611	-	BURPS1710b_A2419	-	peptidase
2411	 67.55	0	2937137..2937475	-	112	76818624	-	BURPS1710b_A2420	-	hypothetical protein
2412	 68.21	0	2938128..2939294	-	388	162210113	-	BURPS1710b_A2421	-	putative monooxygenase
2413	 62.44	-1	2939421..2939633	-	70	76818682	-	BURPS1710b_A2422	-	hypothetical protein
2414	 67.61	0	2939892..2940635	-	247	76817641	-	BURPS1710b_A2423	-	DNA-binding protein
2415	 64.02	-1	2941007..2941195	+	62	76817559	-	BURPS1710b_A2424	-	hypothetical protein
2416	 68.55	0	2941412..2942422	+	336	76819732	-	BURPS1710b_A2426	-	hypothetical protein
2417	 69.70	0	2941454..2941981	-	175	76819184	-	BURPS1710b_A2425	-	hypothetical protein
2418	 69.38	0	2942806..2943654	-	282	76817367	vsrD	BURPS1710b_A2427	-	LuxR family DNA-binding response regulator
2419	 70.31	0	2943898..2944473	+	191	76817942	-	BURPS1710b_A2428	-	universal stress protein
2420	 72.76	0	2944843..2945679	-	278	76817329	-	BURPS1710b_A2429	-	universal stress protein family protein
2421	 73.33	+1	2945679..2946173	-	164	76819817	-	BURPS1710b_A2430	-	universal stress protein
2422	 70.24	0	2946355..2947194	-	279	76817965	-	BURPS1710b_A2431	-	universal stress protein family protein
2423	 69.07	0	2947444..2948484	+	346	76818698	-	BURPS1710b_A2432	-	alcohol dehydrogenase, zinc-containing
2424	 72.26	0	2948818..2951550	-	910	76819440	-	BURPS1710b_A2434	-	200 kDa antigen p200, putative
2425	 70.43	0	2948887..2949975	+	362	76817584	-	BURPS1710b_A2433	-	dedA family protein
2426	 72.18	0	2950030..2951370	+	446	76817454	-	BURPS1710b_A2435	-	major facilitator superfamily protein
2427	 71.79	0	2951692..2952570	+	292	76818921	-	BURPS1710b_A2436	-	short chain dehydrogenase/reductase family oxidoreductase
2428	 72.76	0	2951812..2953353	-	513	76819673	-	BURPS1710b_A2437	-	hypothetical protein
2429	 71.61	0	2952586..2953455	+	289	76818461	-	BURPS1710b_A2438	-	methyltransferase CmcJ
2430	 67.30	0	2953951..2954268	-	105	76818000	-	BURPS1710b_A2439	-	hypothetical protein
2431	 66.16	0	2954454..2955839	+	461	76818643	proY	BURPS1710b_A2440	-	amino acid permease
2432	 58.02	-2	2956393..2956635	-	80	76819198	-	BURPS1710b_A2441	-	DNA-binding protein
2433	 59.60	-2	2956681..2957076	+	131	76817520	bprA	BURPS1710b_A2442	-	H-NS histone family protein
2434	 71.07	0	2957470..2958786	-	438	76818122	-	BURPS1710b_A2443	-	acyl-CoA dehydrogenase domain-containing protein
2435	 68.21	0	2958779..2960524	+	581	76819193	-	BURPS1710b_A2445	-	hypothetical protein
2436	 68.57	0	2959208..2959786	-	192	76819008	-	BURPS1710b_A2444	-	hypothetical protein
2437	 63.28	-1	2959823..2960707	-	294	76818454	-	BURPS1710b_A2446	-	hypothetical protein
2438	 68.81	0	2961093..2961698	+	201	76817260	-	BURPS1710b_A2447	-	hypothetical protein
2439	 71.77	0	2961722..2963209	+	495	76818817	-	BURPS1710b_A2448	-	putative nitrilotriacetate monooxygenase component A
2440	 71.96	0	2961857..2963329	-	490	76818187	-	BURPS1710b_A2449	-	hypothetical protein
2441	 71.87	0	2963351..2964676	+	441	76817298	-	BURPS1710b_A2450	-	inosine-uridine preferring nucleoside hydrolase
2442	 69.18	0	2964700..2965734	-	344	76819264	rbsK	BURPS1710b_A2451	-	ribokinase
2443	 70.58	0	2965678..2966418	+	246	76817473	-	BURPS1710b_A2452	-	hypothetical protein
68.61	MEAN

4.48	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.