IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1710b



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.61 STD DEV: 4.48
Burkholderia pseudomallei 1710b chromosome II, complete sequence - 1..3181762
2611 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2174	 73.08	0	2667214..2668008	+	264	76818705	-	BURPS1710b_A2182	-	enoyl-CoA hydratase
2175	 70.93	0	2668005..2669153	+	382	76817911	-	BURPS1710b_A2183	-	enoyl-CoA hydratase/isomerase family protein
2176	 72.74	0	2669606..2670988	-	460	76818808	-	BURPS1710b_A2184	-	outer membrane efflux protein
2177	 68.50	0	2670998..2672959	-	653	76819453	macB	BURPS1710b_A2185	-	macrolide-specific ABC-type efflux carrier
2178	 67.60	0	2672962..2674248	-	428	76818349	macA	BURPS1710b_A2186	-	macrolide efflux protein MacA
2179	 67.29	0	2674310..2675587	+	425	76818931	-	BURPS1710b_A2187	-	luciferase-like monooxygenase
2180	 64.45	0	2675957..2676679	+	240	76819812	-	BURPS1710b_A2188	-	ribonuclease T2 family protein
2181	 66.78	0	2677154..2678068	-	304	76819322	glsA	BURPS1710b_A2189	-	glutaminase
2182	 69.77	0	2678068..2678421	+	117	76817302	-	BURPS1710b_A2190	-	hypothetical protein
2183	 65.04	0	2678517..2679254	+	245	76819124	-	BURPS1710b_A2191	-	DNA-binding response regulator
2184	 69.12	0	2679456..2680757	+	433	76819708	-	BURPS1710b_A2192	-	sensor histidine kinase
2185	 68.36	0	2681103..2684051	-	982	76819645	-	BURPS1710b_A2193	-	patatin-like phospholipase
2186	 71.37	0	2684078..2685226	+	382	76817754	-	BURPS1710b_A2194	-	cell shape determining protein MreB
2187	 68.68	0	2685278..2685625	-	115	76818205	cytC4	BURPS1710b_A2195	-	cytochrome c4 family protein
2188	 69.05	0	2685438..2685563	+	41	76818912	-	BURPS1710b_A2196	-	hypothetical protein
2189	 69.54	0	2685567..2686331	+	254	76819519	-	BURPS1710b_A2197	-	HD domain-containing protein
2190	 73.24	+1	2686432..2688744	+	770	76817674	-	BURPS1710b_A2198	-	amylo-alpha-1,6-glucosidase family
2191	 68.18	0	2688840..2689103	+	87	76817351	-	BURPS1710b_A2199	-	hypothetical protein
2192	 71.60	0	2689339..2689581	-	80	76817552	tpc2	BURPS1710b_A2200	-	putative terpene cyclase
2193	 71.98	0	2689581..2690390	-	269	76818058	tpc2	BURPS1710b_A2201	-	putative terpene cyclase
2194	 71.67	0	2690419..2690658	+	79	76819018	-	BURPS1710b_A2202	-	hypothetical protein
2195	 66.88	0	2690728..2691204	+	158	76819697	-	BURPS1710b_A2203	-	glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein
2196	 69.09	0	2691497..2692156	+	219	76818688	gst10	BURPS1710b_A2204	-	glutathione S-transferase-like protein
2197	 70.32	0	2692197..2692907	+	236	76819259	-	BURPS1710b_A2205	-	hypothetical protein
2198	 65.66	0	2692957..2693253	+	98	76817867	-	BURPS1710b_A2206	-	hypothetical protein
2199	 70.66	0	2694781..2698062	-	1093	76818432	-	BURPS1710b_A2207	-	sensor kinase protein
2200	 70.44	0	2696157..2696819	-	220	76819632	-	BURPS1710b_A2208	-	response regulator protein
2201	 70.38	0	2696980..2697840	+	286	76817429	-	BURPS1710b_A2209	-	putative DNA-binding protein
2202	 62.22	-1	2698226..2698495	+	89	76819182	-	BURPS1710b_A2210	-	hypothetical protein
2203	 69.02	0	2698390..2698644	-	84	76818615	-	BURPS1710b_A2211	-	hypothetical protein
2204	 63.61	-1	2698722..2699048	-	108	76818311	-	BURPS1710b_A2212	-	hypothetical protein
2205	 69.44	0	2699138..2699605	-	155	76817696	-	BURPS1710b_A2213	-	rhodanese-like domain-containing protein
2206	 72.20	0	2699712..2700668	+	318	76819131	ftrA	BURPS1710b_A2214	-	transcriptional activator FtrA
2207	 70.27	0	2700018..2701487	-	489	76819700	-	BURPS1710b_A2215	-	hypothetical protein
2208	 69.79	0	2700870..2701157	+	95	76818229	-	BURPS1710b_A2216	-	hypothetical protein
2209	 68.54	0	2701242..2701721	+	159	76817711	-	BURPS1710b_A2217	-	hypothetical protein
2210	 70.18	0	2701785..2703236	+	483	76819456	dapE	BURPS1710b_A2218	-	M20/M25/M40 family peptidase
2211	 71.00	0	2703346..2703714	+	122	76818099	-	BURPS1710b_A2219	-	TfoX, N-terminal
2212	 68.65	0	2703970..2704824	+	284	76817392	-	BURPS1710b_A2220	-	hypothetical protein
2213	 69.29	0	2705101..2705367	+	88	76819380	-	BURPS1710b_A2221	-	insertion element hypothetical protein
2214	 61.58	-1	2706335..2708299	+	654	76819718	pepX	BURPS1710b_A2222	-	x-prolyl-dipeptidyl aminopeptidase
2215	 58.93	-2	2708460..2710217	+	585	76819158	-	BURPS1710b_A2223	-	serine-type carboxypeptidase family protein
2216	 61.44	-1	2711530..2711682	-	50	76817850	-	BURPS1710b_A2224	-	hypothetical protein
2217	 44.59	-2	2712211..2714208	+	665	76818388	-	BURPS1710b_A2225	-	hypothetical protein
2218	 59.93	-1	2715361..2715642	+	93	76817997	-	BURPS1710b_A2226	-	transposase
2219	 59.32	-2	2716331..2716507	+	58	76818575	-	BURPS1710b_A2227	-	insertion element hypothetical protein
2220	 43.04	-2	2718436..2719146	+	236	76819488	cpxR	BURPS1710b_A2228	-	response regulator protein
2221	 61.78	-1	2720344..2721489	+	381	76819790	-	BURPS1710b_A2229	-	putative alpha-ketoglutarate-dependent taurine dioxygenase
2222	 57.87	-2	2721850..2723667	-	605	76819562	-	BURPS1710b_A2230	-	peptidase
2223	 71.03	0	2724023..2724664	+	213	76818997	-	BURPS1710b_A2231	-	acetyltransferase
2224	 64.84	0	2724534..2724752	+	72	76818075	-	BURPS1710b_A2232	-	hypothetical protein
2225	 70.26	0	2724961..2726295	-	444	76817505	-	BURPS1710b_A2233	-	hypothetical protein
2226	 69.10	0	2726607..2728004	-	465	76817550	-	BURPS1710b_A2234	-	EmrB/QacA family drug resistance transporter
2227	 67.63	0	2728508..2730382	+	624	162210115	treA	BURPS1710b_A2235	-	trehalase
2228	 62.91	-1	2730903..2731595	+	230	76819621	-	BURPS1710b_A2236	-	hypothetical protein
2229	 68.98	0	2731576..2732268	-	230	76818913	-	BURPS1710b_A2237	-	hypothetical protein
2230	 68.25	0	2731624..2732253	+	209	76819829	norE	BURPS1710b_A2238	-	cytochrome c oxidase, subunit III family protein
2231	 69.97	0	2732275..2732577	+	100	76818737	-	BURPS1710b_A2239	-	hypothetical protein
2232	 71.32	0	2732613..2733644	+	343	76819576	-	BURPS1710b_A2241	-	hypothetical protein
2233	 69.62	0	2732670..2733380	-	236	76819024	-	BURPS1710b_A2240	-	LuxR family transcriptional regulator
2234	 69.74	0	2733550..2733744	+	64	76818380	-	BURPS1710b_A2242	-	hypothetical protein
2235	 73.33	+1	2733693..2733872	-	59	76817839	-	BURPS1710b_A2243	-	hypothetical protein
2236	 69.82	0	2733862..2734908	+	348	76817252	-	BURPS1710b_A2245	-	hypothetical protein
2237	 69.89	0	2733865..2734920	-	351	76818714	-	BURPS1710b_A2246	-	hypothetical protein
2238	 69.35	0	2734014..2734274	-	86	76819437	-	BURPS1710b_A2244	-	hypothetical protein
2239	 70.22	0	2735126..2737096	+	656	76817995	asnB	BURPS1710b_A2247	-	asparagine synthase (glutamine-hydrolyzing)
2240	 65.62	0	2737148..2737624	-	158	76818711	-	BURPS1710b_A2248	-	hypothetical protein
2241	 71.58	0	2738249..2741059	-	936	76819376	iorB	BURPS1710b_A2249	-	isoquinoline 1-oxidoreductase, beta subunit
2242	 70.13	0	2740483..2740944	-	153	76819375	iorA	BURPS1710b_A2250	-	isoquinoline 1-oxidoreductase, alpha subunit
2243	 68.88	0	2740956..2742128	+	390	76817335	-	BURPS1710b_A2251	-	AraC family transcription regulator
2244	 64.66	0	2742347..2742745	+	132	76818524	-	BURPS1710b_A2252	-	hypothetical protein
2245	 64.43	0	2743177..2743533	-	118	76819093	-	BURPS1710b_A2253	-	hypothetical protein
2246	 68.73	0	2743821..2745176	+	451	76818209	-	BURPS1710b_A2254	-	acyl-CoA dehydrogenase domain-containing protein
2247	 73.15	+1	2745193..2746395	+	400	76819536	-	BURPS1710b_A2255	-	acyl-CoA dehydrogenase domain-containing protein
2248	 70.54	0	2745764..2747827	-	687	76818777	-	BURPS1710b_A2256	-	hypothetical protein
2249	 69.94	0	2746490..2747893	+	467	76817834	-	BURPS1710b_A2257	-	monoxygenase
2250	 70.35	0	2748167..2749495	-	442	76819101	rpeA	BURPS1710b_A2258	-	sensor kinase protein
2251	 69.32	0	2749496..2750362	-	288	76818875	-	BURPS1710b_A2259	-	response regulator protein
2252	 67.05	0	2750426..2751205	+	259	76818176	-	BURPS1710b_A2260	-	MipA family MltA-interacting protein
2253	 72.56	0	2751229..2752416	+	395	76817424	-	BURPS1710b_A2261	-	NAD-dependent epimerase/dehydratase family protein
2254	 64.38	0	2752460..2752897	-	145	76819277	hpaR	BURPS1710b_A2262	-	homoprotocatechuate degradation operon regulator, HpaR
2255	 71.01	0	2753063..2753752	+	229	76818558	hpaG	BURPS1710b_A2263	-	4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit
2256	 68.24	0	2753749..2754513	+	254	76818837	hpaG	BURPS1710b_A2264	-	4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit
2257	 68.37	0	2754537..2756000	+	487	76817682	hpaE	BURPS1710b_A2265	-	5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
2258	 67.59	0	2754695..2757397	+	900	76818576	-	BURPS1710b_A2266	-	hypothetical protein
2259	 66.78	0	2756070..2756918	+	282	76819308	hpaD	BURPS1710b_A2267	-	3,4-dihydroxyphenylacetate 2,3-dioxygenase
2260	 65.14	0	2756976..2757368	+	130	76819141	hpcD	BURPS1710b_A2268	-	5-carboxymethyl-2-hydroxymuconate delta isomerase
2261	 67.54	0	2757391..2758194	+	267	76817566	hpaH	BURPS1710b_A2269	-	2-oxo-hepta-3-ene-1,7-dioic acid hydratase
2262	 72.02	0	2757394..2760102	-	902	76818542	-	BURPS1710b_A2271	-	AraC family transcription regulator
2263	 74.60	+1	2758204..2759010	+	268	76819596	hpaI	BURPS1710b_A2270	-	2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
2264	 73.81	+1	2760112..2761077	+	321	76818652	-	BURPS1710b_A2272	-	zinc-binding dehydrogenase family oxidoreductase
2265	 69.33	0	2761170..2762519	-	449	76818078	-	BURPS1710b_A2273	-	outer membrane porin protein
2266	 71.91	0	2762732..2763799	-	355	76818685	potA	BURPS1710b_A2274	-	ABC transporter, ATP-binding protein
2267	 69.15	0	2763792..2765561	-	589	76818107	-	BURPS1710b_A2275	-	putative transmembrane ABC transporter protein
2268	 62.72	-1	2765661..2766749	-	362	76818414	tbpA2	BURPS1710b_A2276	-	putative periplasmic solute-binding protein
2269	 66.78	0	2766686..2767549	+	287	76817820	-	BURPS1710b_A2277	-	DNA-binding response regulator TctD
2270	 72.91	0	2767546..2769051	+	501	76819540	tctE	BURPS1710b_A2278	-	sensor histidine kinase
2271	 70.57	0	2769664..2770533	-	289	76819766	-	BURPS1710b_A2279	-	MOSC domain-containing protein
2272	 75.44	+1	2771377..2771547	+	56	76819221	-	BURPS1710b_A2280	-	hypothetical protein
2273	 66.92	0	2772439..2773641	+	400	76817364	opcP1	BURPS1710b_A2281	-	outer membrane porin
68.61	MEAN

4.48	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.