IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1710b



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.61 STD DEV: 4.48
Burkholderia pseudomallei 1710b chromosome II, complete sequence - 1..3181762
2611 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2116	 66.91	0	2588158..2589384	-	408	76818582	apAC	BURPS1710b_A2124	-	aminopeptidase
2117	 67.90	0	2589502..2591205	-	567	76819324	-	BURPS1710b_A2125	-	metallopeptidase domain-containing protein
2118	 66.57	0	2591677..2592762	-	361	76818189	-	BURPS1710b_A2126	-	AraC family transcriptional regulator
2119	 64.04	-1	2592889..2593839	+	316	76819002	-	BURPS1710b_A2127	-	ABC transporter, periplasmic glycine/betaine-binding protein
2120	 69.11	0	2593661..2595709	-	682	76818604	-	BURPS1710b_A2129	-	hypothetical protein
2121	 69.78	0	2593922..2594851	+	309	76819607	-	BURPS1710b_A2128	-	hypothetical protein
2122	 67.97	0	2594936..2595931	+	331	76818886	-	BURPS1710b_A2130	-	3-hydroxybutyryl-CoA dehydrogenase
2123	 69.15	0	2595949..2596431	+	160	76817342	-	BURPS1710b_A2131	-	hypothetical protein
2124	 73.44	+1	2596467..2597426	+	319	76817727	-	BURPS1710b_A2132	-	lipase (esterase)
2125	 69.58	0	2597773..2598081	-	102	76819489	-	BURPS1710b_A2133	-	hypothetical protein
2126	 69.19	0	2598315..2599304	-	329	76818638	-	BURPS1710b_A2134	-	short chain dehydrogenase/reductase family oxidoreductase
2127	 65.05	0	2599523..2599894	-	123	76818368	-	BURPS1710b_A2135	-	hypothetical protein
2128	 64.71	0	2600090..2600344	+	84	76817492	-	BURPS1710b_A2136	-	hypothetical protein
2129	 74.59	+1	2600583..2602034	-	483	76819502	dadA	BURPS1710b_A2137	-	D-amino-acid dehydrogenase
2130	 64.34	0	2602717..2603832	+	371	76818760	braC	BURPS1710b_A2138	-	leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor
2131	 65.80	0	2604026..2604952	+	308	76818755	braD	BURPS1710b_A2139	-	high-affinity branched-chain amino acid transport system permease protein
2132	 67.85	0	2604961..2606232	+	423	76818367	livM	BURPS1710b_A2140	-	leucine/isoleucine/valine transporter permease subunit
2133	 67.44	0	2606229..2607002	+	257	76817634	livG	BURPS1710b_A2141	-	leucine/isoleucine/valine transporter ATP-binding subunit
2134	 67.33	0	2607031..2607783	-	250	76819793	-	BURPS1710b_A2142	-	hypothetical protein
2135	 58.27	-2	2607822..2608226	-	134	76817518	-	BURPS1710b_A2143	-	hypothetical protein
2136	 70.36	0	2608429..2609673	+	414	76819310	lasA	BURPS1710b_A2144	-	hypothetical protein
2137	 74.57	+1	2609995..2611449	-	484	76818581	pchA	BURPS1710b_A2145	-	salicylate biosynthesis isochorismate synthase
2138	 70.26	0	2611446..2611751	-	101	76818473	pchB	BURPS1710b_A2146	-	isochorismate-pyruvate lyase
2139	 72.22	0	2611748..2612521	-	257	76819767	pchC	BURPS1710b_A2147	-	pyochelin biosynthetic protein
2140	 71.22	0	2612518..2614581	-	687	76819057	pchD	BURPS1710b_A2148	-	salicyl-AMP ligase
2141	 68.62	0	2614783..2615754	+	323	76819146	pchR	BURPS1710b_A2149	-	AraC family transcription regulator
2142	 74.54	+1	2615881..2620416	+	1511	76818249	pchE	BURPS1710b_A2150	-	pyochelin synthetase
2143	 72.60	0	2620164..2626418	+	2084	76817327	pchF	BURPS1710b_A2151	-	pyochelin synthetase
2144	 75.19	+1	2626415..2627470	+	351	76819692	pchG	BURPS1710b_A2152	-	pyochelin biosynthetic protein
2145	 75.41	+1	2627467..2629194	+	575	76818819	pchH	BURPS1710b_A2153	-	putative ATP-binding component of ABC transporter
2146	 75.41	+1	2629191..2630975	+	594	76817900	pchI	BURPS1710b_A2154	-	ABC transporter
2147	 69.99	0	2631052..2633310	+	752	76819570	fptA	BURPS1710b_A2155	-	Fe(III)-pyochelin receptor precursor
2148	 74.07	+1	2633426..2633587	-	53	76819015	-	BURPS1710b_A2156	-	hypothetical protein
2149	 75.97	+1	2633578..2635092	+	504	76818358	-	BURPS1710b_A2157	-	putative iron-regulated membrane protein
2150	 71.78	0	2635109..2636380	+	423	76817581	-	BURPS1710b_A2158	-	hypothetical protein
2151	 67.01	0	2636755..2637045	-	96	76819147	-	BURPS1710b_A2159	-	2Fe-2S iron-sulfur
2152	 71.26	0	2637469..2639643	-	724	76819725	-	BURPS1710b_A2160	-	sigma-54 activated regulatory protein
2153	 64.62	0	2639679..2639873	+	64	76817432	-	BURPS1710b_A2161	-	hypothetical protein
2154	 65.62	0	2640556..2640843	+	95	76818248	-	BURPS1710b_A2162	-	hypothetical protein
2155	 68.31	0	2640973..2641338	+	121	76819761	-	BURPS1710b_A2163	-	hypothetical protein
2156	 66.44	0	2641825..2643126	-	433	76818695	xprA	BURPS1710b_A2164	-	permease
2157	 67.62	0	2643359..2643985	+	208	76818329	-	BURPS1710b_A2165	-	hypothetical protein
2158	 69.89	0	2645379..2645471	+	30	76817571	-	BURPS1710b_A2166	-	hypothetical protein
2159	 70.28	0	2645911..2646297	-	128	76819365	-	BURPS1710b_A2167	-	hypothetical protein
2160	 68.32	0	2647040..2647765	-	241	76818293	-	BURPS1710b_A2168	-	hypothetical protein
2161	 69.00	0	2647882..2648781	+	299	76819656	phnR	BURPS1710b_A2169	-	LysR family regulatory protein
2162	 68.21	0	2648811..2650364	-	517	76818904	-	BURPS1710b_A2170	-	aldehyde dehydrogenase family protein
2163	 66.21	0	2650322..2651200	-	292	76818159	-	BURPS1710b_A2171	-	TauD/TfdA family dioxygenase
2164	 65.37	0	2651136..2653301	-	721	76817404	fom2	BURPS1710b_A2172	-	thiamine pyrophosphate enzyme family protein
2165	 65.79	0	2653744..2654652	-	302	76819298	-	BURPS1710b_A2173	-	hypothetical protein
2166	 72.19	0	2654690..2656480	-	596	162210109	-	BURPS1710b_A2174	-	short chain dehydrogenase
2167	 65.37	0	2657929..2658702	-	257	76819076	-	BURPS1710b_A2175	-	SPFH domain-containing protein/band 7 family protein
2168	 76.29	+1	2658699..2660381	-	560	76818292	-	BURPS1710b_A2176	-	nodulation efficiency protein D
2169	 70.04	0	2660288..2661415	-	375	76819635	-	BURPS1710b_A2177	-	AraC family transcription regulator
2170	 68.34	0	2661515..2662648	+	377	76817780	acdA	BURPS1710b_A2178	-	acyl-CoA dehydrogenase
2171	 68.30	0	2662847..2666206	+	1119	76817249	mmsA	BURPS1710b_A2180	-	methylmalonate-semialdehyde dehydrogenase
2172	 69.07	0	2662905..2664608	+	567	76819758	acsA	BURPS1710b_A2179	-	AMP-binding enzyme
2173	 70.68	0	2666318..2667214	+	298	76817982	mmsB	BURPS1710b_A2181	-	3-hydroxyisobutyrate dehydrogenase
2174	 73.08	0	2667214..2668008	+	264	76818705	-	BURPS1710b_A2182	-	enoyl-CoA hydratase
2175	 70.93	0	2668005..2669153	+	382	76817911	-	BURPS1710b_A2183	-	enoyl-CoA hydratase/isomerase family protein
2176	 72.74	0	2669606..2670988	-	460	76818808	-	BURPS1710b_A2184	-	outer membrane efflux protein
2177	 68.50	0	2670998..2672959	-	653	76819453	macB	BURPS1710b_A2185	-	macrolide-specific ABC-type efflux carrier
2178	 67.60	0	2672962..2674248	-	428	76818349	macA	BURPS1710b_A2186	-	macrolide efflux protein MacA
2179	 67.29	0	2674310..2675587	+	425	76818931	-	BURPS1710b_A2187	-	luciferase-like monooxygenase
2180	 64.45	0	2675957..2676679	+	240	76819812	-	BURPS1710b_A2188	-	ribonuclease T2 family protein
2181	 66.78	0	2677154..2678068	-	304	76819322	glsA	BURPS1710b_A2189	-	glutaminase
2182	 69.77	0	2678068..2678421	+	117	76817302	-	BURPS1710b_A2190	-	hypothetical protein
2183	 65.04	0	2678517..2679254	+	245	76819124	-	BURPS1710b_A2191	-	DNA-binding response regulator
2184	 69.12	0	2679456..2680757	+	433	76819708	-	BURPS1710b_A2192	-	sensor histidine kinase
2185	 68.36	0	2681103..2684051	-	982	76819645	-	BURPS1710b_A2193	-	patatin-like phospholipase
2186	 71.37	0	2684078..2685226	+	382	76817754	-	BURPS1710b_A2194	-	cell shape determining protein MreB
2187	 68.68	0	2685278..2685625	-	115	76818205	cytC4	BURPS1710b_A2195	-	cytochrome c4 family protein
2188	 69.05	0	2685438..2685563	+	41	76818912	-	BURPS1710b_A2196	-	hypothetical protein
2189	 69.54	0	2685567..2686331	+	254	76819519	-	BURPS1710b_A2197	-	HD domain-containing protein
2190	 73.24	+1	2686432..2688744	+	770	76817674	-	BURPS1710b_A2198	-	amylo-alpha-1,6-glucosidase family
2191	 68.18	0	2688840..2689103	+	87	76817351	-	BURPS1710b_A2199	-	hypothetical protein
2192	 71.60	0	2689339..2689581	-	80	76817552	tpc2	BURPS1710b_A2200	-	putative terpene cyclase
2193	 71.98	0	2689581..2690390	-	269	76818058	tpc2	BURPS1710b_A2201	-	putative terpene cyclase
2194	 71.67	0	2690419..2690658	+	79	76819018	-	BURPS1710b_A2202	-	hypothetical protein
2195	 66.88	0	2690728..2691204	+	158	76819697	-	BURPS1710b_A2203	-	glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein
2196	 69.09	0	2691497..2692156	+	219	76818688	gst10	BURPS1710b_A2204	-	glutathione S-transferase-like protein
2197	 70.32	0	2692197..2692907	+	236	76819259	-	BURPS1710b_A2205	-	hypothetical protein
2198	 65.66	0	2692957..2693253	+	98	76817867	-	BURPS1710b_A2206	-	hypothetical protein
2199	 70.66	0	2694781..2698062	-	1093	76818432	-	BURPS1710b_A2207	-	sensor kinase protein
2200	 70.44	0	2696157..2696819	-	220	76819632	-	BURPS1710b_A2208	-	response regulator protein
2201	 70.38	0	2696980..2697840	+	286	76817429	-	BURPS1710b_A2209	-	putative DNA-binding protein
2202	 62.22	-1	2698226..2698495	+	89	76819182	-	BURPS1710b_A2210	-	hypothetical protein
2203	 69.02	0	2698390..2698644	-	84	76818615	-	BURPS1710b_A2211	-	hypothetical protein
2204	 63.61	-1	2698722..2699048	-	108	76818311	-	BURPS1710b_A2212	-	hypothetical protein
2205	 69.44	0	2699138..2699605	-	155	76817696	-	BURPS1710b_A2213	-	rhodanese-like domain-containing protein
2206	 72.20	0	2699712..2700668	+	318	76819131	ftrA	BURPS1710b_A2214	-	transcriptional activator FtrA
2207	 70.27	0	2700018..2701487	-	489	76819700	-	BURPS1710b_A2215	-	hypothetical protein
2208	 69.79	0	2700870..2701157	+	95	76818229	-	BURPS1710b_A2216	-	hypothetical protein
2209	 68.54	0	2701242..2701721	+	159	76817711	-	BURPS1710b_A2217	-	hypothetical protein
2210	 70.18	0	2701785..2703236	+	483	76819456	dapE	BURPS1710b_A2218	-	M20/M25/M40 family peptidase
2211	 71.00	0	2703346..2703714	+	122	76818099	-	BURPS1710b_A2219	-	TfoX, N-terminal
2212	 68.65	0	2703970..2704824	+	284	76817392	-	BURPS1710b_A2220	-	hypothetical protein
2213	 69.29	0	2705101..2705367	+	88	76819380	-	BURPS1710b_A2221	-	insertion element hypothetical protein
2214	 61.58	-1	2706335..2708299	+	654	76819718	pepX	BURPS1710b_A2222	-	x-prolyl-dipeptidyl aminopeptidase
2215	 58.93	-2	2708460..2710217	+	585	76819158	-	BURPS1710b_A2223	-	serine-type carboxypeptidase family protein
68.61	MEAN

4.48	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.