IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1710b



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.61 STD DEV: 4.48
Burkholderia pseudomallei 1710b chromosome II, complete sequence - 1..3181762
2611 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2020	 70.86	0	2465588..2466088	+	166	76818081	-	BURPS1710b_A2028	-	hypothetical protein
2021	 64.95	0	2466282..2466572	+	96	76817441	groES	BURPS1710b_A2029	-	co-chaperonin GroES
2022	 68.98	0	2466594..2468234	+	546	76819196	groEL	BURPS1710b_A2030	-	chaperonin GroEL
2023	 65.77	0	2468296..2468742	-	148	76818480	-	BURPS1710b_A2031	-	hypothetical protein
2024	 69.00	0	2469269..2471884	+	871	76818467	nrdA	BURPS1710b_A2032	-	ribonucleotide reductase, coenzyme B12-dependent
2025	 71.16	0	2472907..2474532	+	541	76817725	-	BURPS1710b_A2033	-	2-aminobenzoate-CoA ligase
2026	 72.62	0	2474619..2475509	+	296	76818843	-	BURPS1710b_A2034	-	hypothetical protein
2027	 71.46	0	2475062..2476606	-	514	76819586	-	BURPS1710b_A2035	-	hypothetical protein
2028	 70.28	0	2475509..2476615	+	368	76818511	-	BURPS1710b_A2036	-	putative beta-ketoacyl-ACP synthase
2029	 69.87	0	2476605..2477603	+	332	76817747	fabH	BURPS1710b_A2037	-	3-oxoacyl-(acyl carrier protein) synthase III
2030	 71.60	0	2477618..2478508	+	296	76817525	-	BURPS1710b_A2038	-	putative metallo-beta lactamase-related protein
2031	 70.82	0	2478681..2482511	+	1276	76818257	-	BURPS1710b_A2039	-	polyketide synthase
2032	 70.51	0	2482525..2484660	+	711	76818244	-	BURPS1710b_A2040	-	hypothetical protein
2033	 69.26	0	2484667..2485398	+	243	76818092	-	BURPS1710b_A2042	-	hypothetical protein
2034	 66.67	0	2484902..2485003	-	33	76817667	-	BURPS1710b_A2041	-	hypothetical protein
2035	 61.60	-1	2487178..2487414	+	78	76818642	-	BURPS1710b_A2043	-	transposase B
2036	 69.02	0	2487629..2489497	-	622	76819213	ahpF	BURPS1710b_A2044	-	alkyl hydroperoxide reductase subunit
2037	 63.12	-1	2489440..2490003	-	187	76819819	ahpC	BURPS1710b_A2045	-	alkyl hydroperoxide reductase protein
2038	 74.19	+1	2490207..2490299	+	30	76819102	-	BURPS1710b_A2046	-	hypothetical protein
2039	 65.63	0	2490263..2491516	-	417	76819698	-	BURPS1710b_A2047	-	chitin binding domain-containing protein
2040	 73.21	+1	2491707..2492684	+	325	76818712	-	BURPS1710b_A2049	-	hypothetical protein
2041	 70.96	0	2491831..2492412	+	193	76818546	-	BURPS1710b_A2048	-	hypothetical protein
2042	 75.32	+1	2492498..2493121	-	207	76817797	-	BURPS1710b_A2050	-	nitroreductase family protein
2043	 71.15	0	2493248..2493559	+	103	76817948	-	BURPS1710b_A2051	-	hypothetical protein
2044	 65.89	0	2493855..2495270	+	471	76817638	-	BURPS1710b_A2052	-	hypothetical protein
2045	 64.15	0	2495275..2496306	+	343	76819481	-	BURPS1710b_A2053	-	hypothetical protein
2046	 72.10	0	2496315..2497271	+	318	76819058	-	BURPS1710b_A2054	-	transglutaminase-like superfamily protein
2047	 69.15	0	2497408..2500830	+	1140	76818371	-	BURPS1710b_A2055	-	transglutaminase-like superfamily protein
2048	 71.75	0	2500970..2503666	+	898	76819470	-	BURPS1710b_A2056	-	hypothetical protein
2049	 72.83	0	2503657..2504679	+	340	76817297	-	BURPS1710b_A2057	-	transglutaminase domain-containing protein
2050	 70.79	0	2504867..2506369	-	500	76818038	-	BURPS1710b_A2058	-	GntR family regulatory protein
2051	 68.07	0	2506473..2507684	+	403	76819633	mfsA	BURPS1710b_A2059	-	putative transporter protein
2052	 68.25	0	2508006..2509079	-	357	76819347	-	BURPS1710b_A2060	-	hypothetical protein
2053	 70.75	0	2509213..2511123	+	636	76817721	-	BURPS1710b_A2062	-	DJ-1/PfpI family protein
2054	 71.12	0	2509318..2510283	-	321	76818587	darR	BURPS1710b_A2061	-	AraC family transcriptional regulator
2055	 71.44	0	2511269..2512336	-	355	76819313	phnW	BURPS1710b_A2063	-	2-aminoethylphosphonate-pyruvate transaminase
2056	 73.35	+1	2512351..2513532	-	393	76818942	ppd	BURPS1710b_A2064	-	3-phosphonopyruvate decarboxylase
2057	 68.15	0	2513529..2515217	-	562	76818535	pepM	BURPS1710b_A2065	-	phosphoenolpyruvate phosphomutase
2058	 68.94	0	2515208..2515954	+	248	76818183	-	BURPS1710b_A2066	-	hypothetical protein
2059	 68.88	0	2515214..2515981	-	255	76818403	rfbF	BURPS1710b_A2067	-	ADP-glucose pyrophosphorylase
2060	 74.47	+1	2516020..2517006	-	328	76819736	-	BURPS1710b_A2068	-	hypothetical protein
2061	 67.02	0	2517018..2517869	-	283	76819693	-	BURPS1710b_A2069	-	2OG-Fe(II) oxygenase family oxidoreductase
2062	 67.51	0	2517788..2518618	-	276	76819139	-	BURPS1710b_A2070	-	putative CDP-alcohol phosphatidyltransferase
2063	 67.10	0	2518722..2520350	+	542	76818232	aarC	BURPS1710b_A2071	-	acetyl-CoA hydrolase/transferase
2064	 75.97	+1	2520447..2520575	+	42	76817704	-	BURPS1710b_A2072	-	hypothetical protein
2065	 64.67	0	2522107..2523009	+	300	76819401	-	BURPS1710b_A2073	-	hypothetical protein
2066	 62.84	-1	2523043..2523591	+	182	76818999	-	BURPS1710b_A2074	-	hypothetical protein
2067	 62.95	-1	2523594..2525099	+	501	76817987	-	BURPS1710b_A2075	-	hypothetical protein
2068	 62.31	-1	2525243..2525770	+	175	76817268	-	BURPS1710b_A2076	-	hypothetical protein
2069	 62.27	-1	2525850..2526281	+	143	76819104	-	BURPS1710b_A2077	-	hypothetical protein
2070	 71.44	0	2526295..2528157	+	620	76818387	-	BURPS1710b_A2078	-	hypothetical protein
2071	 70.61	0	2528154..2529143	+	329	76818050	-	BURPS1710b_A2079	-	hypothetical protein
2072	 71.72	0	2529146..2532016	+	956	76817313	htpM	BURPS1710b_A2080	-	ATP-dependent Clp protease ATP-binding subunit
2073	 63.96	-1	2532007..2534298	+	763	76819321	vgrG5	BURPS1710b_A2081	-	Rhs element Vgr protein
2074	 64.83	0	2534464..2536752	+	762	76819730	vgrG5	BURPS1710b_A2082	-	Rhs element Vgr protein
2075	 68.70	0	2536756..2538972	+	738	76819135	-	BURPS1710b_A2083	-	hypothetical protein
2076	 68.72	0	2538972..2540042	+	356	76818245	-	BURPS1710b_A2084	-	pentapeptide repeat-containing protein
2077	 72.11	0	2540045..2540761	+	238	76819713	-	BURPS1710b_A2085	-	hypothetical protein
2078	 66.41	0	2540804..2541193	+	129	76819119	-	BURPS1710b_A2086	-	hypothetical protein
2079	 72.04	0	2541253..2541792	+	179	76818282	-	BURPS1710b_A2087	-	putative lipoprotein
2080	 69.75	0	2541789..2543150	+	453	76817649	-	BURPS1710b_A2088	-	hypothetical protein
2081	 71.62	0	2543176..2544891	+	571	76819156	-	BURPS1710b_A2089	-	hypothetical protein
2082	 70.86	0	2545077..2548391	+	1104	76818309	icmF3	BURPS1710b_A2090	-	hypothetical protein
2083	 60.00	-1	2548450..2548809	+	119	76818435	-	BURPS1710b_A2091	-	hypothetical protein
2084	 70.07	0	2548964..2549257	+	97	76819309	-	BURPS1710b_A2092	-	hypothetical protein
2085	 58.87	-2	2549482..2549853	+	123	76818613	-	BURPS1710b_A2093	-	hypothetical protein
2086	 67.22	0	2550404..2551303	+	299	76818212	rhlA-2	BURPS1710b_A2094	-	rhamnosyltransferase 1, subunit A
2087	 75.30	+1	2551537..2552856	+	439	76818206	rhlB-1	BURPS1710b_A2095	-	rhamnosyltransferase I, subunit B
2088	 70.26	0	2552853..2554439	+	528	76817483	bcrA	BURPS1710b_A2096	-	multidrug resistance protein
2089	 72.89	0	2554680..2555675	+	331	76818923	rhlC	BURPS1710b_A2097	-	rhamnosyltransferase II
2090	 73.67	+1	2555251..2559675	-	1474	76819674	-	BURPS1710b_A2099	-	hypothetical protein
2091	 75.00	+1	2555980..2557563	+	527	76817856	-	BURPS1710b_A2098	-	RND efflux system outer membrane lipoprotein
2092	 73.54	+1	2557828..2559297	+	489	76818383	emrA	BURPS1710b_A2100	-	multidrug resistance protein
2093	 67.93	0	2559811..2561475	-	554	76818627	sacC	BURPS1710b_A2101	-	levanase
2094	 67.11	0	2561608..2563173	-	521	76817595	sacB	BURPS1710b_A2102	-	levansucrase precursor
2095	 70.62	0	2563368..2564378	+	336	76818328	-	BURPS1710b_A2103	-	LacI family regulatory protein
2096	 66.83	0	2564888..2566087	+	399	76818045	fdhA	BURPS1710b_A2104	-	glutathione-independent formaldehyde dehydrogenase
2097	 67.61	0	2566265..2567530	-	421	76818838	-	BURPS1710b_A2105	-	AraC family transcriptional regulator
2098	 65.96	0	2567706..2570801	-	1031	76819214	-	BURPS1710b_A2107	-	hypothetical protein
2099	 67.69	0	2567724..2568998	+	424	76817352	glyA	BURPS1710b_A2106	-	serine hydroxymethyltransferase
2100	 62.65	-1	2569071..2570042	+	323	76818514	-	BURPS1710b_A2108	-	renal dipeptidase family protein
2101	 67.12	0	2570064..2570726	+	220	76819216	-	BURPS1710b_A2109	-	V4R domain-containing protein
2102	 67.10	0	2570787..2572850	+	687	76818900	stcD	BURPS1710b_A2110	-	oxidoreductase, FAD/FMN-binding
2103	 70.66	0	2572853..2574778	+	641	76818087	-	BURPS1710b_A2111	-	iron-sulfur cluster binding protein
2104	 72.38	0	2574783..2575955	+	390	76819091	eftA	BURPS1710b_A2112	-	electron transfer flavoprotein, alpha subunit
2105	 67.45	0	2575742..2578033	-	763	76819665	-	BURPS1710b_A2114	-	hypothetical protein
2106	 72.90	0	2575952..2576737	+	261	76818504	eftB	BURPS1710b_A2113	-	electron transfer flavoprotein, beta subunit
2107	 64.09	-1	2576789..2578030	+	413	76817951	-	BURPS1710b_A2115	-	iron-sulphur Rieske protein
2108	 67.54	0	2578051..2579196	+	381	76819349	-	BURPS1710b_A2116	-	iron-sulfur cluster-binding protein
2109	 65.16	0	2579306..2580169	+	287	76818545	opuC	BURPS1710b_A2117	-	ABC transporter, periplasmic glycine/betaine-binding protein
2110	 65.40	0	2580350..2582005	+	551	76818208	-	BURPS1710b_A2118	-	hypothetical protein
2111	 66.10	0	2582092..2582967	-	291	76817628	purU	BURPS1710b_A2119	-	formyltetrahydrofolate deformylase
2112	 71.57	0	2583111..2584130	-	339	76818532	-	BURPS1710b_A2120	-	LysR family regulatory protein
2113	 68.51	0	2584131..2585699	+	522	76818920	betC	BURPS1710b_A2121	-	choline sulfatase
2114	 68.25	0	2585594..2586733	+	379	76817784	-	BURPS1710b_A2122	-	glycine betaine ABC transporter substrate-binding protein
2115	 63.08	-1	2586961..2588103	+	380	76818477	omp38	BURPS1710b_A2123	-	outer membrane porin
2116	 66.91	0	2588158..2589384	-	408	76818582	apAC	BURPS1710b_A2124	-	aminopeptidase
2117	 67.90	0	2589502..2591205	-	567	76819324	-	BURPS1710b_A2125	-	metallopeptidase domain-containing protein
2118	 66.57	0	2591677..2592762	-	361	76818189	-	BURPS1710b_A2126	-	AraC family transcriptional regulator
2119	 64.04	-1	2592889..2593839	+	316	76819002	-	BURPS1710b_A2127	-	ABC transporter, periplasmic glycine/betaine-binding protein
68.61	MEAN

4.48	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.