IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1710b



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.61 STD DEV: 4.48
Burkholderia pseudomallei 1710b chromosome II, complete sequence - 1..3181762
2611 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1795	 68.76	0	2186406..2187410	+	334	76818497	-	BURPS1710b_A1796	-	putative kinase
1796	 73.60	+1	2188116..2188721	+	201	76818352	-	BURPS1710b_A1798	-	hypothetical protein
1797	 68.42	0	2188568..2189023	-	151	76818641	-	BURPS1710b_A1799	-	hypothetical protein
1798	 68.58	0	2189434..2189694	-	86	76817486	-	BURPS1710b_A1800	-	hypothetical protein
1799	 65.18	0	2189902..2191176	-	424	76818419	-	BURPS1710b_A1801	-	putative porin-related protein
1800	 65.90	0	2191384..2192163	+	259	76817811	metQ-2	BURPS1710b_A1802	-	D-methionine-binding lipoprotein metQ
1801	 75.84	+1	2192192..2192518	+	108	76819242	-	BURPS1710b_A1803	-	hypothetical protein
1802	 67.84	0	2192639..2193919	-	426	76818555	aotO	BURPS1710b_A1804	-	AotO
1803	 70.87	0	2193955..2196141	+	728	76817545	-	BURPS1710b_A1805	-	O-antigen acetylase
1804	 62.86	-1	2196466..2197254	-	262	76819583	argT	BURPS1710b_A1806	-	lysine-arginine-ornithine transport system, binding exported protein
1805	 70.29	0	2197443..2199704	+	753	76818428	hipO-1	BURPS1710b_A1808	-	peptidase
1806	 71.44	0	2197482..2198381	-	299	76818983	tsaR	BURPS1710b_A1807	-	LysR family transcriptional regulator
1807	 70.03	0	2199971..2201308	+	445	76819337	proP	BURPS1710b_A1809	-	major facilitator family transporter
1808	 70.69	0	2201898..2202617	-	239	76818616	-	BURPS1710b_A1810	-	TetR family transcriptional regulator
1809	 67.25	0	2202978..2203835	-	285	76818154	-	BURPS1710b_A1811	-	IclR family transcriptional regulator
1810	 72.57	0	2204000..2205202	+	400	76817401	pcaF	BURPS1710b_A1812	-	beta-ketoadipyl CoA thiolase
1811	 72.13	0	2205305..2205487	-	60	76819240	-	BURPS1710b_A1813	-	hypothetical protein
1812	 70.42	0	2205987..2207531	+	514	76818678	aer	BURPS1710b_A1814	-	aerotaxis receptor
1813	 66.76	0	2207629..2208732	-	367	76819831	hioM	BURPS1710b_A1815	-	O-methyltransferase family protein
1814	 68.79	0	2207723..2209933	-	736	76817324	-	BURPS1710b_A1816	-	hypothetical protein
1815	 68.82	0	2209063..2211102	-	679	76818061	-	BURPS1710b_A1817	-	hypothetical protein
1816	 71.10	0	2210100..2211092	-	330	76817955	-	BURPS1710b_A1818	-	putative Rieske iron-sulfur protein
1817	 70.06	0	2211385..2212032	-	215	76819098	-	BURPS1710b_A1819	-	hypothetical protein
1818	 69.89	0	2212481..2215678	+	1065	76818441	-	BURPS1710b_A1821	-	hypothetical protein
1819	 69.66	0	2212781..2214250	-	489	76819712	gabD	BURPS1710b_A1820	-	succinate-semialdehyde dehydrogenase
1820	 69.31	0	2214308..2215591	-	427	76817728	gabT	BURPS1710b_A1822	-	4-aminobutyrate transaminase
1821	 72.33	0	2215615..2217450	+	611	76818494	-	BURPS1710b_A1823	-	hypothetical protein
1822	 73.39	+1	2215733..2217427	+	564	76818684	-	BURPS1710b_A1824	-	GntR family transcriptional regulator
1823	 69.16	0	2217444..2219006	-	520	76819433	-	BURPS1710b_A1825	-	C4-dicarboxylate anaerobic carrier family protein
1824	 71.09	0	2219003..2219770	-	255	76818866	-	BURPS1710b_A1826	-	IclR family transcriptional regulator
1825	 71.18	0	2219767..2220675	-	302	76817311	-	BURPS1710b_A1827	-	N-formylglutamate amidohydrolase
1826	 72.05	0	2221018..2221314	+	98	76818014	opcP	BURPS1710b_A1828	-	outer membrane porin protein
1827	 67.32	0	2221311..2221463	+	50	76818146	-	BURPS1710b_A1829	-	outer membrane porin protein
1828	 73.76	+1	2221460..2222530	-	356	76818585	-	BURPS1710b_A1831	-	hypothetical protein
1829	 74.79	+1	2221600..2221833	-	77	76819548	-	BURPS1710b_A1830	-	hypothetical protein
1830	 72.51	0	2222444..2223709	+	421	76817703	selD	BURPS1710b_A1832	-	selenophosphate synthetase
1831	 72.12	0	2224320..2224649	-	109	76817815	-	BURPS1710b_A1833	-	hypothetical protein
1832	 72.36	0	2224712..2224957	-	81	76818238	-	BURPS1710b_A1834	-	hypothetical protein
1833	 67.56	0	2225094..2226101	+	335	76819762	-	BURPS1710b_A1835	-	putative lipoprotein
1834	 70.48	0	2226341..2227180	-	279	76818673	-	BURPS1710b_A1836	-	hypothetical protein
1835	 65.45	0	2226889..2227053	+	54	76818290	-	BURPS1710b_A1837	-	hypothetical protein
1836	 65.77	0	2227543..2228547	-	334	76817757	ceoR	BURPS1710b_A1838	-	LysR family transcriptional regulator
1837	 69.93	0	2228640..2229590	+	316	76818851	llpE	BURPS1710b_A1839	-	lipase-like protein LlpE
1838	 71.06	0	2229640..2230869	+	409	76818881	ceoA	BURPS1710b_A1840	-	RND family efflux transporter MFP subunit
1839	 66.42	0	2230931..2234116	+	1061	76817383	ceoB	BURPS1710b_A1841	-	multidrug-efflux transporter protein
1840	 71.75	0	2234127..2235659	+	510	76819413	-	BURPS1710b_A1842	-	RND efflux system outer membrane lipoprotein
1841	 68.75	0	2235997..2236140	+	47	76819130	-	BURPS1710b_A1843	-	hypothetical protein
1842	 66.72	0	2236157..2237920	+	587	76817748	-	BURPS1710b_A1844	-	hypothetical protein
1843	 67.95	0	2236544..2237785	-	413	76817914	-	BURPS1710b_A1845	-	sodium:dicarboxylate symporter family protein
1844	 61.67	-1	2237769..2238428	-	219	76819285	gntR	BURPS1710b_A1846	-	GntR family transcriptional regulator
1845	 69.43	0	2238584..2239054	+	156	76818541	-	BURPS1710b_A1847	-	acetyltransferase
1846	 70.51	0	2239242..2240255	-	337	76818941	-	BURPS1710b_A1848	-	auxin efflux carrier, putative
1847	 71.28	0	2240558..2242423	-	621	76817592	-	BURPS1710b_A1849	-	AMP-binding domain-containing protein
1848	 72.78	0	2242440..2243339	-	299	76818342	fabD	BURPS1710b_A1850	-	malonyl CoA-acyl carrier protein transacylase
1849	 64.12	-1	2243340..2243771	-	143	76818197	-	BURPS1710b_A1851	-	hypothetical protein
1850	 69.87	0	2243839..2245620	-	593	76818608	fadD	BURPS1710b_A1852	-	fatty-acid-CoA ligase
1851	 71.56	0	2245728..2247116	-	462	76818637	-	BURPS1710b_A1853	-	diaminopimelate decarboxylase
1852	 75.44	+1	2246984..2248465	-	493	76819677	-	BURPS1710b_A1854	-	FkbH domain-containing protein
1853	 70.93	0	2248462..2249517	-	351	76817538	ilvC	BURPS1710b_A1855	-	ketol-acid reductoisomerase
1854	 73.04	0	2249523..2261894	-	4123	76818113	albI	BURPS1710b_A1856	-	polyketide non-ribosomal peptide synthase
1855	 72.47	0	2261953..2263365	-	470	162210114	-	BURPS1710b_A1857	-	gamma-aminobutyraldehyde dehydrogenase
1856	 69.34	0	2263359..2264780	-	473	76819020	-	BURPS1710b_A1858	-	hypothetical protein
1857	 71.73	0	2264789..2265814	-	341	76819513	syrP	BURPS1710b_A1859	-	putative peptide synthase regulatory protein
1858	 74.42	+1	2266074..2266202	-	42	76817878	-	BURPS1710b_A1860	-	hypothetical protein
1859	 66.67	0	2266848..2267366	-	172	76817854	-	BURPS1710b_A1861	-	hypothetical protein
1860	 74.13	+1	2267466..2275964	-	2832	76818692	mtaD	BURPS1710b_A1862	-	thiotemplate mechanism natural product synthetase
1861	 66.16	0	2276711..2277895	+	394	76819232	ppuR	BURPS1710b_A1863	-	ATP-dependent transcription regulator LuxR
1862	 65.33	0	2278318..2279064	+	248	76819218	metQ-1	BURPS1710b_A1864	-	D-methionine-binding lipoprotein MetQ
1863	 68.44	0	2278995..2280518	-	507	76817526	-	BURPS1710b_A1865	-	hypothetical protein
1864	 68.46	0	2279082..2280476	+	464	76818640	-	BURPS1710b_A1866	-	monoxygenase
1865	 74.45	+1	2280545..2281687	+	380	76819164	-	BURPS1710b_A1867	-	ABC transporter, ATP-binding protein
1866	 71.31	0	2281203..2282990	-	595	76817406	-	BURPS1710b_A1869	-	hypothetical protein
1867	 70.62	0	2281680..2282336	+	218	76818234	-	BURPS1710b_A1868	-	ABC transporter, permease protein
1868	 73.51	+1	2283037..2284308	+	423	76817357	-	BURPS1710b_A1870	-	monoxygenase
1869	 70.36	0	2284410..2285168	-	252	76819731	-	BURPS1710b_A1871	-	hypothetical protein
1870	 72.00	0	2286165..2287121	-	318	76819096	pdhR	BURPS1710b_A1872	-	GntR family transcriptional regulator
1871	 71.26	0	2287234..2288103	+	289	76817883	-	BURPS1710b_A1873	-	hypothetical protein
1872	 69.22	0	2288100..2289548	+	482	76819800	-	BURPS1710b_A1874	-	iron-sulfur cluster binding protein
1873	 73.97	+1	2289545..2290270	+	241	76818004	-	BURPS1710b_A1875	-	hypothetical protein
1874	 69.05	0	2290638..2292356	+	572	76817632	glcA	BURPS1710b_A1876	-	glycolate permease
1875	 67.12	0	2292658..2293095	+	145	76818327	-	BURPS1710b_A1877	-	hypothetical protein
1876	 71.06	0	2292851..2296654	-	1267	76819811	-	BURPS1710b_A1880	-	hypothetical protein
1877	 71.51	0	2293072..2293257	-	61	76818732	-	BURPS1710b_A1878	-	hypothetical protein
1878	 73.44	+1	2293291..2294826	-	511	76818057	mmr	BURPS1710b_A1879	-	major facilitator family transporter
1879	 68.31	0	2295094..2296491	-	465	76817504	-	BURPS1710b_A1881	-	major facilitator family transporter
1880	 73.10	+1	2296712..2297752	-	346	76817841	-	BURPS1710b_A1882	-	malate/L-lactate dehydrogenase family protein
1881	 72.28	0	2297617..2301108	-	1163	76819643	-	BURPS1710b_A1884	-	hypothetical protein
1882	 75.27	+1	2297745..2299337	-	530	76817299	-	BURPS1710b_A1883	-	aldehyde dehydrogenase family protein
1883	 71.03	0	2299413..2301407	-	664	76819033	-	BURPS1710b_A1885	-	amino acid permease
1884	 67.26	0	2301499..2302671	-	390	76819757	-	BURPS1710b_A1886	-	hypothetical protein
1885	 72.59	0	2302640..2303602	+	320	76817590	-	BURPS1710b_A1887	-	hypothetical protein
1886	 75.49	+1	2303599..2304732	+	377	76818287	-	BURPS1710b_A1888	-	oxidoreductase, FAD-binding family protein
1887	 72.22	0	2304729..2304962	+	77	76818986	-	BURPS1710b_A1889	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
1888	 77.65	+2	2304914..2306251	+	445	76819390	-	BURPS1710b_A1890	-	pyridine nucleotide-disulphide oxidoreductase
1889	 69.15	0	2306287..2307171	+	294	76817542	-	BURPS1710b_A1891	-	AraC family transcriptional regulator
1890	 67.78	0	2307369..2307638	-	89	76819765	-	BURPS1710b_A1892	-	hypothetical protein
1891	 64.38	0	2307854..2309206	-	450	76817630	-	BURPS1710b_A1893	-	transposase
1892	 70.56	0	2309219..2311273	-	684	76818027	-	BURPS1710b_A1894	-	putative amino acid dioxygenase
1893	 73.87	+1	2311292..2311402	+	36	76819087	-	BURPS1710b_A1895	-	hypothetical protein
1894	 65.64	0	2311407..2311988	+	193	76819549	aroQ2	BURPS1710b_A1896	-	3-dehydroquinate dehydratase
68.61	MEAN

4.48	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.