IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1710b



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.61 STD DEV: 4.48
Burkholderia pseudomallei 1710b chromosome II, complete sequence - 1..3181762
2611 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1645	 68.81	0	2011205..2012230	+	341	76818623	-	BURPS1710b_A1647	-	putative methyltransferase
1646	 72.08	0	2012271..2013212	-	313	76818731	-	BURPS1710b_A1648	-	LysR family transcriptional regulator
1647	 63.03	-1	2013177..2013698	+	173	76817977	-	BURPS1710b_A1649	-	hypothetical protein
1648	 69.40	0	2013742..2015130	-	462	76817698	-	BURPS1710b_A1650	-	hypothetical protein
1649	 64.96	0	2016354..2016704	+	116	76819555	-	BURPS1710b_A1651	-	hypothetical protein
1650	 68.84	0	2017895..2019274	+	459	162210119	lpd	BURPS1710b_A1652	-	mercuric reductase
1651	 66.03	0	2019407..2020351	-	314	76817798	-	BURPS1710b_A1653	-	ABC transporter sugar-binding protein
1652	 70.34	0	2020431..2021465	-	344	76818816	-	BURPS1710b_A1654	-	ABC transporter permease protein
1653	 70.91	0	2021508..2023061	-	517	76817899	-	BURPS1710b_A1655	-	ribose ABC transporter, ATP-binding protein
1654	 72.02	0	2023048..2024298	-	416	76817660	frcR	BURPS1710b_A1656	-	ROK family transcriptional regulator
1655	 81.42	+2	2024801..2025166	-	121	76818510	-	BURPS1710b_A1657	-	hypothetical protein
1656	 68.29	0	2025166..2027811	-	881	76819424	-	BURPS1710b_A1658	-	putative amylase
1657	 68.96	0	2028510..2029907	-	465	162210105	dbpA	BURPS1710b_A1659	-	ATP-dependent RNA helicase DbpA
1658	 67.78	0	2030072..2030701	-	209	76819127	opcP	BURPS1710b_A1660	-	hypothetical protein
1659	 71.31	0	2030736..2032049	-	437	76817256	proP	BURPS1710b_A1661	-	major facilitator family transporter
1660	 69.35	0	2032090..2033280	-	396	76817685	hipO-2	BURPS1710b_A1662	-	hypothetical protein
1661	 68.04	0	2033345..2034361	+	338	76818407	tsaR	BURPS1710b_A1663	-	LysR family transcriptional regulator
1662	 74.07	+1	2034717..2035553	-	278	76818850	-	BURPS1710b_A1664	-	hypothetical protein
1663	 73.45	+1	2035078..2035254	+	58	76819261	-	BURPS1710b_A1665	-	hypothetical protein
1664	 68.78	0	2035595..2036869	+	424	76819486	-	BURPS1710b_A1666	-	fatty acid desaturase domain-containing protein
1665	 71.09	0	2037179..2037811	+	210	76817902	-	BURPS1710b_A1667	-	surface antigen protein
1666	 70.15	0	2037799..2038344	-	181	76818651	-	BURPS1710b_A1668	-	hypothetical protein
1667	 63.44	-1	2038434..2039333	-	299	76819782	gltI	BURPS1710b_A1669	-	glutamate/aspartate periplasmic binding protein precursor
1668	 72.20	0	2039497..2040744	-	415	76819052	dadA	BURPS1710b_A1670	-	hypothetical protein
1669	 70.74	0	2040897..2041829	-	310	76818317	-	BURPS1710b_A1671	-	LysR family transcriptional regulator
1670	 70.63	0	2041520..2043334	-	604	76819112	-	BURPS1710b_A1672	-	hypothetical protein
1671	 71.66	0	2042374..2043114	-	246	76818216	-	BURPS1710b_A1673	-	short chain dehydrogenase
1672	 64.56	0	2043134..2043418	+	94	76817643	-	BURPS1710b_A1674	-	hypothetical protein
1673	 61.24	-1	2043408..2043923	+	171	76819422	-	BURPS1710b_A1675	-	hypothetical protein
1674	 65.40	0	2044286..2046334	+	682	76818820	-	BURPS1710b_A1676	-	LigA
1675	 65.36	0	2044365..2046281	+	638	76819462	-	BURPS1710b_A1677	-	hypothetical protein
1676	 68.69	0	2046587..2049454	+	955	76819003	-	BURPS1710b_A1678	-	alpha-1,2-mannosidase family protein
1677	 67.71	0	2050054..2051112	+	352	76818400	pvcA	BURPS1710b_A1679	-	pyoverdine chromophore biosynthetic protein PvcA
1678	 69.62	0	2051109..2052023	+	304	76818821	pvcB	BURPS1710b_A1680	-	pyoverdine chromophore biosynthetic protein PvcB
1679	 67.07	0	2052049..2053533	+	494	76817901	pvcC	BURPS1710b_A1681	-	pyoverdin chromophore biosynthetic protein PvcC
1680	 69.45	0	2053579..2055447	+	622	76817861	asnB	BURPS1710b_A1682	-	asparagine synthase (glutamine-hydrolyzing)
1681	 71.34	0	2055392..2057467	-	691	76817344	-	BURPS1710b_A1684	-	hypothetical protein
1682	 72.27	0	2055463..2057889	+	808	76819474	-	BURPS1710b_A1685	-	hypothetical protein
1683	 72.94	0	2055476..2056447	+	323	76819510	-	BURPS1710b_A1683	-	quinone oxidoreductase, putative
1684	 70.98	0	2056502..2057428	+	308	76819023	-	BURPS1710b_A1686	-	putative dioxygenase
1685	 67.11	0	2057672..2059033	-	453	76819569	ptxR	BURPS1710b_A1687	-	LysR family regulatory protein
1686	 67.65	0	2059272..2059475	+	67	76817475	-	BURPS1710b_A1688	-	hypothetical protein
1687	 71.47	0	2059856..2063932	-	1358	76818042	sciS	BURPS1710b_A1689	-	SciS protein
1688	 71.01	0	2063961..2065226	-	421	76819105	-	BURPS1710b_A1690	-	hypothetical protein
1689	 69.04	0	2065315..2066661	-	448	76818318	-	BURPS1710b_A1691	-	hypothetical protein
1690	 71.23	0	2066683..2067186	-	167	76819028	-	BURPS1710b_A1692	-	putative lipoprotein
1691	 62.76	-1	2067293..2067778	-	161	76819777	-	BURPS1710b_A1693	-	hypothetical protein
1692	 65.16	0	2067895..2069487	-	530	76817264	-	BURPS1710b_A1694	-	hypothetical protein
1693	 70.27	0	2069429..2073145	-	1238	76817970	-	BURPS1710b_A1695	-	hypothetical protein
1694	 71.96	0	2070046..2072973	-	975	76818832	sciG	BURPS1710b_A1696	-	SciG protein
1695	 72.96	0	2073479..2074225	+	248	76817991	-	BURPS1710b_A1697	-	hypothetical protein
1696	 75.57	+1	2074222..2075187	+	321	76818111	-	BURPS1710b_A1698	-	ImpE protein superfamily protein
1697	 68.90	0	2075174..2075755	+	193	76817523	-	BURPS1710b_A1699	-	hypothetical protein
1698	 69.47	0	2075786..2077675	+	629	76819516	-	BURPS1710b_A1700	-	SciC protein
1699	 71.27	0	2077675..2078760	+	361	76819180	-	BURPS1710b_A1701	-	SciB protein
1700	 73.55	+1	2078757..2079860	+	367	76819067	-	BURPS1710b_A1702	-	ImpA-like N-terminal family protein
1701	 67.40	0	2079932..2082259	+	775	76818495	-	BURPS1710b_A1703	-	Rhs element Vgr protein
1702	 69.29	0	2082180..2084768	+	862	76819210	-	BURPS1710b_A1704	-	pentapeptide repeat-containing protein
1703	 67.59	0	2084765..2085847	+	360	76818653	-	BURPS1710b_A1705	-	pentapeptide repeat-containing protein
1704	 67.73	0	2086029..2086688	+	219	76818273	-	BURPS1710b_A1706	-	hypothetical protein
1705	 65.09	0	2086729..2087109	+	126	76818805	-	BURPS1710b_A1707	-	hypothetical protein
1706	 66.44	0	2087745..2089970	+	741	76818439	-	BURPS1710b_A1709	-	hypothetical protein
1707	 66.20	0	2087811..2089727	-	638	76819385	-	BURPS1710b_A1708	-	hypothetical protein
1708	 70.92	0	2090067..2090960	-	297	76819531	-	BURPS1710b_A1710	-	LysR family transcriptional regulator
1709	 63.23	-1	2090960..2091832	+	290	76818980	-	BURPS1710b_A1711	-	quinone reductase
1710	 73.01	0	2091747..2092298	+	183	76818395	-	BURPS1710b_A1712	-	AraC/XylS family transcription factor
1711	 67.44	0	2092832..2094127	-	431	76817868	metY	BURPS1710b_A1713	-	O-acetylhomoserine sulfhydrylase
1712	 67.18	0	2094411..2094803	-	130	76819246	-	BURPS1710b_A1714	-	glyoxalase family protein
1713	 69.59	0	2095019..2096662	+	547	76819834	-	BURPS1710b_A1715	-	hypothetical protein
1714	 70.11	0	2095157..2096752	-	531	76818730	-	BURPS1710b_A1716	-	hypothetical protein
1715	 76.99	+1	2095977..2096315	+	112	76819031	-	BURPS1710b_A1717	-	hypothetical protein
1716	 66.59	0	2096789..2098144	-	451	76817296	-	BURPS1710b_A1718	-	hypothetical protein
1717	 72.14	0	2098331..2099335	-	334	76818010	-	BURPS1710b_A1719	-	urea amidolyase-like protein
1718	 65.30	0	2099325..2100200	-	291	76818827	-	BURPS1710b_A1720	-	allophanate hydrolase, subunit 1
1719	 71.65	0	2100197..2101642	-	481	76818864	accC	BURPS1710b_A1721	-	acetyl-CoA carboxylase biotin carboxylase subunit
1720	 69.55	0	2101648..2101890	-	80	76819644	-	BURPS1710b_A1722	-	hypothetical protein
1721	 69.04	0	2101904..2102704	-	266	76817778	-	BURPS1710b_A1723	-	hypothetical protein
1722	 66.56	0	2102972..2103886	+	304	76818539	-	BURPS1710b_A1724	-	LysR family transcriptional regulator
1723	 69.63	0	2104397..2104666	+	89	76818634	-	BURPS1710b_A1725	-	hypothetical protein
1724	 70.88	0	2104641..2107154	+	837	76818064	-	BURPS1710b_A1726	-	penicillin acylase
1725	 70.40	0	2107168..2108478	+	436	76818974	-	BURPS1710b_A1728	-	proline iminopeptidase
1726	 71.82	0	2107231..2107521	-	96	76817930	-	BURPS1710b_A1727	-	hypothetical protein
1727	 71.16	0	2108246..2110981	-	911	76817387	-	BURPS1710b_A1730	-	hypothetical protein
1728	 68.36	0	2108702..2109526	+	274	76818507	-	BURPS1710b_A1729	-	hypothetical protein
1729	 72.68	0	2109619..2111631	-	670	76819438	-	BURPS1710b_A1732	-	putative lipoprotein
1730	 70.24	0	2110298..2110465	+	55	76818862	-	BURPS1710b_A1731	-	hypothetical protein
1731	 70.49	0	2112429..2114414	-	661	76817922	tsr	BURPS1710b_A1733	-	methyl-accepting chemotaxis protein I
1732	 73.83	+1	2114407..2116500	-	697	76817386	prpR	BURPS1710b_A1734	-	propionate catabolism operon regulatory protein PrpR
1733	 64.76	0	2116548..2118908	+	786	76817702	-	BURPS1710b_A1736	-	hypothetical protein
1734	 67.67	0	2116717..2117610	+	297	76819805	prpB	BURPS1710b_A1735	-	2-methylisocitrate lyase
1735	 64.79	0	2117659..2118831	+	390	76817908	prpC	BURPS1710b_A1737	-	methylcitrate synthase
1736	 69.06	0	2118905..2121499	+	864	76819682	acnD	BURPS1710b_A1738	-	aconitate hydratase
1737	 70.78	0	2121657..2122847	+	396	76819477	prpF	BURPS1710b_A1739	-	AcnD-accessory protein PrpF
1738	 68.67	0	2122900..2123646	-	248	76818252	-	BURPS1710b_A1740	-	hypothetical protein
1739	 66.82	0	2124749..2125387	+	212	76817952	-	BURPS1710b_A1741	-	hypothetical protein
1740	 65.99	0	2125440..2126030	+	196	76817366	-	BURPS1710b_A1742	-	hypothetical protein
1741	 69.31	0	2126109..2127584	+	491	76817912	-	BURPS1710b_A1743	-	heme biosynthesis protein
1742	 70.14	0	2127793..2129406	+	537	76817377	tar	BURPS1710b_A1744	-	methyl-accepting chemotaxis protein
1743	 72.84	0	2129589..2131337	-	582	76819608	-	BURPS1710b_A1745	-	RemN protein
1744	 74.83	+1	2131340..2132221	+	293	76817414	-	BURPS1710b_A1746	-	LysR family transcriptional regulator
68.61	MEAN

4.48	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.