IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1710b



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.61 STD DEV: 4.48
Burkholderia pseudomallei 1710b chromosome II, complete sequence - 1..3181762
2611 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1577	 56.21	-2	1923512..1924429	+	305	76818369	-	BURPS1710b_A1579	-	spermidine/putrescine ABC transporter, permease protein
1578	 56.26	-2	1924416..1925270	+	284	76817648	-	BURPS1710b_A1580	-	spermidine/putrescine ABC transporter, permease protein
1579	 53.94	-2	1924940..1926298	+	452	76818255	-	BURPS1710b_A1581	-	putative ABC transport system, exported substrate-binding protein
1580	 69.15	0	1927567..1930143	+	858	76819042	-	BURPS1710b_A1582	-	Rhs element Vgr protein
1581	 64.19	0	1930153..1932336	-	727	76819733	-	BURPS1710b_A1583	-	hypothetical protein
1582	 63.42	-1	1930276..1932462	+	728	76819188	-	BURPS1710b_A1584	-	hypothetical protein
1583	 60.29	-1	1932601..1934136	+	511	76817521	-	BURPS1710b_A1585	-	hypothetical protein
1584	 67.80	0	1934146..1934409	+	87	76817262	-	BURPS1710b_A1586	-	PAAR motif-containing protein
1585	 65.24	0	1934824..1935243	-	139	76818485	-	BURPS1710b_A1587	-	hypothetical protein
1586	 67.89	0	1935263..1935589	-	108	76818824	-	BURPS1710b_A1588	-	thioredoxin
1587	 67.39	0	1936061..1936753	+	230	76819421	-	BURPS1710b_A1589	-	hypothetical protein
1588	 65.08	0	1937146..1937334	-	62	76818718	opcP	BURPS1710b_A1590	-	outer membrane porin OpcP
1589	 68.05	0	1937339..1938133	-	264	76819432	-	BURPS1710b_A1592	-	hypothetical protein
1590	 68.44	0	1937345..1937569	+	74	76819772	-	BURPS1710b_A1591	-	hypothetical protein
1591	 63.10	-1	1938073..1939668	-	531	76817582	ctaD	BURPS1710b_A1593	-	cytochrome c oxidase polypeptide I
1592	 63.88	-1	1940818..1942398	-	526	76817973	-	BURPS1710b_A1594	-	hypothetical protein
1593	 67.42	0	1943828..1945681	+	617	76819030	-	BURPS1710b_A1595	-	Hep_Hag family protein
1594	 62.16	-1	1945748..1947235	-	495	76818382	-	BURPS1710b_A1596	-	hypothetical protein
1595	 61.08	-1	1947497..1948051	-	184	76817853	-	BURPS1710b_A1597	-	hypothetical protein
1596	 57.51	-2	1948636..1949181	+	181	76819245	fimA4	BURPS1710b_A1598	-	frimbrial protein
1597	 60.72	-1	1949261..1949983	+	240	76818373	staB	BURPS1710b_A1599	-	chaperone protein EcpD precursor
1598	 64.30	0	1950099..1952840	+	913	76818889	-	BURPS1710b_A1600	-	outer membrane usher protein
1599	 66.67	0	1952742..1952966	-	74	76817499	-	BURPS1710b_A1601	-	hypothetical protein
1600	 62.77	-1	1952842..1953405	+	187	76818341	-	BURPS1710b_A1602	-	major fimbrial subunit protein
1601	 60.03	-1	1953449..1954126	+	225	76817325	-	BURPS1710b_A1603	-	hypothetical protein
1602	 62.49	-1	1954129..1955805	+	558	76819194	ompA2	BURPS1710b_A1604	-	OmpA family protein
1603	 58.52	-2	1956195..1956734	+	179	76819078	-	BURPS1710b_A1605	-	hypothetical protein
1604	 60.20	-1	1956768..1958267	+	499	76817314	-	BURPS1710b_A1606	-	hypothetical protein
1605	 60.25	-1	1958467..1958949	+	160	76819763	-	BURPS1710b_A1607	-	hypothetical protein
1606	 61.26	-1	1959532..1960974	+	480	76818799	-	BURPS1710b_A1608	-	hypothetical protein
1607	 65.98	0	1960971..1962272	+	433	76818070	-	BURPS1710b_A1609	-	hypothetical protein
1608	 67.23	0	1962287..1966195	+	1302	76818330	sciS	BURPS1710b_A1610	-	SciS protein
1609	 81.30	+2	1966226..1966348	+	40	76817597	-	BURPS1710b_A1611	-	hypothetical protein
1610	 66.84	0	1966385..1966954	+	189	76818362	-	BURPS1710b_A1612	-	hypothetical protein
1611	 64.73	0	1967052..1969628	+	858	76817637	-	BURPS1710b_A1613	-	Rhs element Vgr protein
1612	 64.81	0	1969703..1969972	+	89	76819204	-	BURPS1710b_A1614	-	Rhs family protein
1613	 63.10	-1	1969985..1973437	+	1150	76818340	-	BURPS1710b_A1615	-	Rhs1 protein
1614	 61.00	-1	1973330..1974724	-	464	76819079	-	BURPS1710b_A1616	-	hypothetical protein
1615	 61.29	-1	1974527..1974619	+	30	76817816	-	BURPS1710b_A1617	-	hypothetical protein
1616	 58.21	-2	1974721..1975749	-	342	76819533	-	BURPS1710b_A1618	-	hypothetical protein
1617	 67.04	0	1975804..1976874	-	356	76818907	-	BURPS1710b_A1619	-	ImpA-like N-terminal family protein
1618	 67.14	0	1976893..1977942	-	349	76818593	-	BURPS1710b_A1620	-	hypothetical protein
1619	 64.11	-1	1977939..1979819	-	626	76818079	-	BURPS1710b_A1621	-	hypothetical protein
1620	 63.58	-1	1979821..1980339	-	172	76818466	-	BURPS1710b_A1622	-	hypothetical protein
1621	 66.20	0	1980326..1981180	-	284	76817875	sciE	BURPS1710b_A1623	-	SciE protein
1622	 64.49	0	1981164..1982219	-	351	76818970	-	BURPS1710b_A1624	-	hypothetical protein
1623	 65.76	0	1982538..1985294	+	918	76818455	sciG	BURPS1710b_A1625	-	SciG protein
1624	 72.50	0	1985557..1985676	+	39	76818717	-	BURPS1710b_A1626	-	hypothetical protein
1625	 63.84	-1	1985685..1988651	-	988	76817983	rcsC	BURPS1710b_A1627	-	two-component system sensor protein
1626	 59.00	-2	1989401..1989661	+	86	76819234	-	BURPS1710b_A1628	-	hypothetical protein
1627	 56.99	-2	1989988..1990080	+	30	76819143	-	BURPS1710b_A1629	-	hypothetical protein
1628	 50.98	-2	1990332..1990994	-	220	76818490	-	BURPS1710b_A1630	-	DNA-binding response regulator
1629	 61.06	-1	1991543..1994110	-	855	76817744	-	BURPS1710b_A1631	-	putative fimbrial usher protein
1630	 55.13	-2	1994288..1994998	-	236	76818165	fimC1	BURPS1710b_A1632	-	putative periplasmic chaperone protein
1631	 57.99	-2	1996357..1997013	-	218	76817479	-	BURPS1710b_A1633	-	hypothetical protein
1632	 59.02	-2	1998018..1998710	+	230	76819334	-	BURPS1710b_A1634	-	DNA-binding response regulator
1633	 55.44	-2	1999180..1999473	-	97	76818617	bprA	BURPS1710b_A1635	-	H-NS histone family protein
1634	 68.78	0	1999964..2001289	+	441	76819458	ttuB	BURPS1710b_A1636	-	MFS transporter
1635	 75.24	+1	2001363..2002529	+	388	76817577	glxK	BURPS1710b_A1637	-	glycerate kinase 1
1636	 70.94	0	2002634..2005603	+	989	76819073	-	BURPS1710b_A1639	-	hypothetical protein
1637	 70.24	0	2002722..2004176	+	484	76818303	pyk	BURPS1710b_A1638	-	pyruvate kinase
1638	 71.78	0	2004189..2005655	+	488	76819080	-	BURPS1710b_A1640	-	putative transcriptional regulator
1639	 51.93	-2	2005758..2006042	+	94	76817263	-	BURPS1710b_A1641	-	hypothetical protein
1640	 69.93	0	2006229..2006381	-	50	76817985	-	BURPS1710b_A1642	-	hypothetical protein
1641	 59.80	-1	2006424..2006525	-	33	76818746	-	BURPS1710b_A1643	-	hypothetical protein
1642	 68.38	0	2006482..2009523	+	1013	76818767	-	BURPS1710b_A1644	-	putative peptide synthase protein
1643	 68.99	0	2006700..2010962	+	1420	76819339	-	BURPS1710b_A1645	-	limonene-1,2-epoxide hydrolase catalytic domain-contain protein
1644	 70.74	0	2009563..2010543	+	326	76819485	-	BURPS1710b_A1646	-	putative dehydratase
1645	 68.81	0	2011205..2012230	+	341	76818623	-	BURPS1710b_A1647	-	putative methyltransferase
1646	 72.08	0	2012271..2013212	-	313	76818731	-	BURPS1710b_A1648	-	LysR family transcriptional regulator
1647	 63.03	-1	2013177..2013698	+	173	76817977	-	BURPS1710b_A1649	-	hypothetical protein
1648	 69.40	0	2013742..2015130	-	462	76817698	-	BURPS1710b_A1650	-	hypothetical protein
1649	 64.96	0	2016354..2016704	+	116	76819555	-	BURPS1710b_A1651	-	hypothetical protein
1650	 68.84	0	2017895..2019274	+	459	162210119	lpd	BURPS1710b_A1652	-	mercuric reductase
1651	 66.03	0	2019407..2020351	-	314	76817798	-	BURPS1710b_A1653	-	ABC transporter sugar-binding protein
1652	 70.34	0	2020431..2021465	-	344	76818816	-	BURPS1710b_A1654	-	ABC transporter permease protein
1653	 70.91	0	2021508..2023061	-	517	76817899	-	BURPS1710b_A1655	-	ribose ABC transporter, ATP-binding protein
1654	 72.02	0	2023048..2024298	-	416	76817660	frcR	BURPS1710b_A1656	-	ROK family transcriptional regulator
1655	 81.42	+2	2024801..2025166	-	121	76818510	-	BURPS1710b_A1657	-	hypothetical protein
1656	 68.29	0	2025166..2027811	-	881	76819424	-	BURPS1710b_A1658	-	putative amylase
1657	 68.96	0	2028510..2029907	-	465	162210105	dbpA	BURPS1710b_A1659	-	ATP-dependent RNA helicase DbpA
1658	 67.78	0	2030072..2030701	-	209	76819127	opcP	BURPS1710b_A1660	-	hypothetical protein
1659	 71.31	0	2030736..2032049	-	437	76817256	proP	BURPS1710b_A1661	-	major facilitator family transporter
1660	 69.35	0	2032090..2033280	-	396	76817685	hipO-2	BURPS1710b_A1662	-	hypothetical protein
1661	 68.04	0	2033345..2034361	+	338	76818407	tsaR	BURPS1710b_A1663	-	LysR family transcriptional regulator
1662	 74.07	+1	2034717..2035553	-	278	76818850	-	BURPS1710b_A1664	-	hypothetical protein
1663	 73.45	+1	2035078..2035254	+	58	76819261	-	BURPS1710b_A1665	-	hypothetical protein
1664	 68.78	0	2035595..2036869	+	424	76819486	-	BURPS1710b_A1666	-	fatty acid desaturase domain-containing protein
1665	 71.09	0	2037179..2037811	+	210	76817902	-	BURPS1710b_A1667	-	surface antigen protein
1666	 70.15	0	2037799..2038344	-	181	76818651	-	BURPS1710b_A1668	-	hypothetical protein
1667	 63.44	-1	2038434..2039333	-	299	76819782	gltI	BURPS1710b_A1669	-	glutamate/aspartate periplasmic binding protein precursor
1668	 72.20	0	2039497..2040744	-	415	76819052	dadA	BURPS1710b_A1670	-	hypothetical protein
1669	 70.74	0	2040897..2041829	-	310	76818317	-	BURPS1710b_A1671	-	LysR family transcriptional regulator
1670	 70.63	0	2041520..2043334	-	604	76819112	-	BURPS1710b_A1672	-	hypothetical protein
1671	 71.66	0	2042374..2043114	-	246	76818216	-	BURPS1710b_A1673	-	short chain dehydrogenase
1672	 64.56	0	2043134..2043418	+	94	76817643	-	BURPS1710b_A1674	-	hypothetical protein
1673	 61.24	-1	2043408..2043923	+	171	76819422	-	BURPS1710b_A1675	-	hypothetical protein
1674	 65.40	0	2044286..2046334	+	682	76818820	-	BURPS1710b_A1676	-	LigA
1675	 65.36	0	2044365..2046281	+	638	76819462	-	BURPS1710b_A1677	-	hypothetical protein
1676	 68.69	0	2046587..2049454	+	955	76819003	-	BURPS1710b_A1678	-	alpha-1,2-mannosidase family protein
68.61	MEAN

4.48	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.