IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1710b



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.61 STD DEV: 4.48
Burkholderia pseudomallei 1710b chromosome II, complete sequence - 1..3181762
2611 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1519	 65.54	0	1852463..1853086	+	207	76817800	-	BURPS1710b_A1521	-	glutathione S-transferase
1520	 72.55	0	1853521..1853928	-	135	76818055	-	BURPS1710b_A1522	-	hypothetical protein
1521	 66.10	0	1854065..1855303	-	412	76818752	-	BURPS1710b_A1523	-	patatin-like phospholipase
1522	 65.78	0	1855300..1856085	-	261	76817662	bdhA-1	BURPS1710b_A1524	-	3-hydroxybutyrate dehydrogenase
1523	 63.83	-1	1856132..1856872	-	246	76818235	-	BURPS1710b_A1525	-	acetoacetate decarboxylase
1524	 70.75	0	1857292..1857927	+	211	76819224	-	BURPS1710b_A1526	-	PAP2 family protein
1525	 66.67	0	1857950..1858243	-	97	76818655	-	BURPS1710b_A1527	-	hypothetical protein
1526	 68.39	0	1858802..1860544	+	580	76817659	-	BURPS1710b_A1529	-	hypothetical protein
1527	 68.24	0	1858952..1859779	-	275	76818450	mxcB	BURPS1710b_A1528	-	siderophore-interacting protein
1528	 68.65	0	1859819..1860523	-	234	76817865	-	BURPS1710b_A1530	-	PadR-like family regulatory protein
1529	 65.32	0	1860926..1862332	+	468	76817417	-	BURPS1710b_A1531	-	putative cytochrome monooxygenase related protein
1530	 55.22	-2	1862482..1862682	+	66	76819226	-	BURPS1710b_A1532	-	hypothetical protein
1531	 64.55	0	1862856..1863707	+	283	76818650	-	BURPS1710b_A1533	-	hypothetical protein
1532	 66.55	0	1863704..1864525	+	273	76818022	-	BURPS1710b_A1534	-	hypothetical protein
1533	 66.97	0	1864510..1866465	+	651	76817304	-	BURPS1710b_A1535	-	radical SAM domain/B12 binding domain-containing protein
1534	 68.79	0	1866479..1867468	+	329	76819062	-	BURPS1710b_A1536	-	hypothetical protein
1535	 67.95	0	1867640..1868260	-	206	76819729	-	BURPS1710b_A1537	-	LysE family protein
1536	 67.04	0	1868257..1870134	-	625	76817966	-	BURPS1710b_A1539	-	hypothetical protein
1537	 69.24	0	1868368..1869261	+	297	76818605	oriC	BURPS1710b_A1538	-	chromosome replication initiation inhibitor protein
1538	 65.56	0	1869336..1871228	-	630	76817898	fnrL	BURPS1710b_A1540	-	Crp/FNR family transcriptional regulator
1539	 71.01	0	1871734..1873713	+	659	76818785	-	BURPS1710b_A1541	-	aldehyde dehydrogenase (NADP) family protein
1540	 66.14	0	1873719..1874660	+	313	76819743	-	BURPS1710b_A1542	-	gluconolactonase precursor
1541	 70.29	0	1874596..1875396	-	266	76819045	-	BURPS1710b_A1544	-	hypothetical protein
1542	 68.38	0	1874927..1875043	+	38	76818339	-	BURPS1710b_A1543	-	hypothetical protein
1543	 71.14	0	1875153..1875353	-	66	76819081	-	BURPS1710b_A1545	-	hypothetical protein
1544	 71.10	0	1875393..1875911	-	172	76817990	-	BURPS1710b_A1546	-	hypothetical protein
1545	 66.28	0	1876337..1877359	+	340	76817528	cysE	BURPS1710b_A1547	-	serine O-acetyltransferase
1546	 67.16	0	1877646..1878449	-	267	76819454	-	BURPS1710b_A1548	-	pteridine reductase 1
1547	 67.01	0	1878450..1879328	-	292	76818716	folE	BURPS1710b_A1549	-	GTP cyclohydrolase I
1548	 68.40	0	1879316..1880239	-	307	76818136	ndsR	BURPS1710b_A1550	-	LysR family transcriptional regulator
1549	 69.12	0	1880356..1881579	+	407	76818936	pobA	BURPS1710b_A1551	-	4-hydroxybenzoate 3-monooxygenase
1550	 66.72	0	1881346..1883247	-	633	76817242	-	BURPS1710b_A1553	-	hypothetical protein
1551	 67.37	0	1881787..1882500	+	237	76818849	pcaI	BURPS1710b_A1552	-	3-oxoadipate CoA-transferase subunit A
1552	 65.75	0	1882519..1883175	+	218	76817759	pcaJ	BURPS1710b_A1554	-	3-oxoadipate CoA-succinyl transferase beta subunit
1553	 72.04	0	1883311..1884669	+	452	76819651	pcaB	BURPS1710b_A1555	-	3-carboxy-cis,cis-muconate cycloisomerase
1554	 67.68	0	1884682..1885467	+	261	76819655	pcaD	BURPS1710b_A1556	-	3-oxoadipate enol-lactonase
1555	 64.34	0	1885483..1885869	+	128	76819074	pcaC	BURPS1710b_A1557	-	4-carboxymuconolactone decarboxylase
1556	 69.10	0	1886048..1887403	+	451	76818192	pcaK	BURPS1710b_A1558	-	4-hydroxybenzoate transporter
1557	 62.97	-1	1887820..1889742	-	640	76817506	-	BURPS1710b_A1559	-	LysE family protein
1558	 63.20	-1	1889784..1890707	-	307	76819564	lpqO	BURPS1710b_A1560	-	LpqO-like protein
1559	 70.25	0	1890823..1892079	-	418	76818742	lrg6	BURPS1710b_A1561	-	light regulation of gametogenesis6 protein
1560	 64.56	0	1892066..1892683	-	205	76818157	-	BURPS1710b_A1562	-	hypothetical protein
1561	 67.25	0	1892896..1894086	-	396	76817258	chrA	BURPS1710b_A1563	-	chromate resistance transport protein
1562	 69.46	0	1894083..1894904	-	273	76819271	chrB	BURPS1710b_A1564	-	chromate resistance exported protein
1563	 62.48	-1	1896044..1896592	+	182	76818408	-	BURPS1710b_A1565	-	hypothetical protein
1564	 66.93	0	1896573..1896947	+	124	76818738	-	BURPS1710b_A1566	-	plastocyanin/azurin family copper binding protein
1565	 67.10	0	1896956..1897651	+	231	76818123	rpoE3	BURPS1710b_A1567	-	RNA polymerase sigma factor
1566	 70.28	0	1898128..1904043	+	1971	76817253	uvrA	BURPS1710b_A1568	-	excinuclease ABC, subunit A, form 2
1567	 60.35	-1	1905076..1905471	-	131	76819748	-	BURPS1710b_A1569	-	KluA
1568	 59.00	-2	1906550..1907071	-	173	76817530	bprA	BURPS1710b_A1570	-	H-NS histone family protein
1569	 61.89	-1	1906848..1908752	+	634	76819268	kgtP	BURPS1710b_A1571	-	alpha-ketoglutarate permease
1570	 67.13	0	1908805..1910736	+	643	76818694	dctB1	BURPS1710b_A1572	-	C4-dicarboxylate transport sensor protein
1571	 66.38	0	1910648..1912066	+	472	76819086	-	BURPS1710b_A1573	-	C4-dicarboxylate transport transcriptional response regulator
1572	 70.25	0	1913527..1914168	-	213	76818501	-	BURPS1710b_A1574	-	hypothetical protein
1573	 68.15	0	1914375..1916327	+	650	76817692	-	BURPS1710b_A1575	-	hypothetical protein
1574	 71.20	0	1916474..1917091	+	205	76818659	-	BURPS1710b_A1576	-	AraC family transcription regulator
1575	 67.42	0	1917409..1919658	+	749	76819491	plcN	BURPS1710b_A1577	-	phospholipase C
1576	 55.48	-2	1922595..1923014	-	139	76817636	-	BURPS1710b_A1578	-	acetyltransferase
1577	 56.21	-2	1923512..1924429	+	305	76818369	-	BURPS1710b_A1579	-	spermidine/putrescine ABC transporter, permease protein
1578	 56.26	-2	1924416..1925270	+	284	76817648	-	BURPS1710b_A1580	-	spermidine/putrescine ABC transporter, permease protein
1579	 53.94	-2	1924940..1926298	+	452	76818255	-	BURPS1710b_A1581	-	putative ABC transport system, exported substrate-binding protein
1580	 69.15	0	1927567..1930143	+	858	76819042	-	BURPS1710b_A1582	-	Rhs element Vgr protein
1581	 64.19	0	1930153..1932336	-	727	76819733	-	BURPS1710b_A1583	-	hypothetical protein
1582	 63.42	-1	1930276..1932462	+	728	76819188	-	BURPS1710b_A1584	-	hypothetical protein
1583	 60.29	-1	1932601..1934136	+	511	76817521	-	BURPS1710b_A1585	-	hypothetical protein
1584	 67.80	0	1934146..1934409	+	87	76817262	-	BURPS1710b_A1586	-	PAAR motif-containing protein
1585	 65.24	0	1934824..1935243	-	139	76818485	-	BURPS1710b_A1587	-	hypothetical protein
1586	 67.89	0	1935263..1935589	-	108	76818824	-	BURPS1710b_A1588	-	thioredoxin
1587	 67.39	0	1936061..1936753	+	230	76819421	-	BURPS1710b_A1589	-	hypothetical protein
1588	 65.08	0	1937146..1937334	-	62	76818718	opcP	BURPS1710b_A1590	-	outer membrane porin OpcP
1589	 68.05	0	1937339..1938133	-	264	76819432	-	BURPS1710b_A1592	-	hypothetical protein
1590	 68.44	0	1937345..1937569	+	74	76819772	-	BURPS1710b_A1591	-	hypothetical protein
1591	 63.10	-1	1938073..1939668	-	531	76817582	ctaD	BURPS1710b_A1593	-	cytochrome c oxidase polypeptide I
1592	 63.88	-1	1940818..1942398	-	526	76817973	-	BURPS1710b_A1594	-	hypothetical protein
1593	 67.42	0	1943828..1945681	+	617	76819030	-	BURPS1710b_A1595	-	Hep_Hag family protein
1594	 62.16	-1	1945748..1947235	-	495	76818382	-	BURPS1710b_A1596	-	hypothetical protein
1595	 61.08	-1	1947497..1948051	-	184	76817853	-	BURPS1710b_A1597	-	hypothetical protein
1596	 57.51	-2	1948636..1949181	+	181	76819245	fimA4	BURPS1710b_A1598	-	frimbrial protein
1597	 60.72	-1	1949261..1949983	+	240	76818373	staB	BURPS1710b_A1599	-	chaperone protein EcpD precursor
1598	 64.30	0	1950099..1952840	+	913	76818889	-	BURPS1710b_A1600	-	outer membrane usher protein
1599	 66.67	0	1952742..1952966	-	74	76817499	-	BURPS1710b_A1601	-	hypothetical protein
1600	 62.77	-1	1952842..1953405	+	187	76818341	-	BURPS1710b_A1602	-	major fimbrial subunit protein
1601	 60.03	-1	1953449..1954126	+	225	76817325	-	BURPS1710b_A1603	-	hypothetical protein
1602	 62.49	-1	1954129..1955805	+	558	76819194	ompA2	BURPS1710b_A1604	-	OmpA family protein
1603	 58.52	-2	1956195..1956734	+	179	76819078	-	BURPS1710b_A1605	-	hypothetical protein
1604	 60.20	-1	1956768..1958267	+	499	76817314	-	BURPS1710b_A1606	-	hypothetical protein
1605	 60.25	-1	1958467..1958949	+	160	76819763	-	BURPS1710b_A1607	-	hypothetical protein
1606	 61.26	-1	1959532..1960974	+	480	76818799	-	BURPS1710b_A1608	-	hypothetical protein
1607	 65.98	0	1960971..1962272	+	433	76818070	-	BURPS1710b_A1609	-	hypothetical protein
1608	 67.23	0	1962287..1966195	+	1302	76818330	sciS	BURPS1710b_A1610	-	SciS protein
1609	 81.30	+2	1966226..1966348	+	40	76817597	-	BURPS1710b_A1611	-	hypothetical protein
1610	 66.84	0	1966385..1966954	+	189	76818362	-	BURPS1710b_A1612	-	hypothetical protein
1611	 64.73	0	1967052..1969628	+	858	76817637	-	BURPS1710b_A1613	-	Rhs element Vgr protein
1612	 64.81	0	1969703..1969972	+	89	76819204	-	BURPS1710b_A1614	-	Rhs family protein
1613	 63.10	-1	1969985..1973437	+	1150	76818340	-	BURPS1710b_A1615	-	Rhs1 protein
1614	 61.00	-1	1973330..1974724	-	464	76819079	-	BURPS1710b_A1616	-	hypothetical protein
1615	 61.29	-1	1974527..1974619	+	30	76817816	-	BURPS1710b_A1617	-	hypothetical protein
1616	 58.21	-2	1974721..1975749	-	342	76819533	-	BURPS1710b_A1618	-	hypothetical protein
1617	 67.04	0	1975804..1976874	-	356	76818907	-	BURPS1710b_A1619	-	ImpA-like N-terminal family protein
1618	 67.14	0	1976893..1977942	-	349	76818593	-	BURPS1710b_A1620	-	hypothetical protein
68.61	MEAN

4.48	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.