IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1710b



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.61 STD DEV: 4.48
Burkholderia pseudomallei 1710b chromosome II, complete sequence - 1..3181762
2611 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1432	 68.95	0	1743301..1744440	-	379	76818990	-	BURPS1710b_A1434	-	putative porin protein
1433	 69.82	0	1744508..1746313	-	601	76818360	-	BURPS1710b_A1435	-	medium-chain-fatty-acid--CoA ligase
1434	 74.55	+1	1746615..1749380	-	921	76817917	acoK	BURPS1710b_A1436	-	GerE family regulatory protein
1435	 72.72	0	1749333..1751711	+	792	76817423	-	BURPS1710b_A1438	-	hypothetical protein
1436	 75.14	+1	1749544..1750605	+	353	76819163	-	BURPS1710b_A1437	-	hypothetical protein
1437	 70.33	0	1750708..1751691	+	327	76819341	qor-2	BURPS1710b_A1439	-	quinone oxidoreductase
1438	 69.73	0	1751693..1752541	+	282	76818141	tauD	BURPS1710b_A1440	-	taurine catabolism dioxygenase TauD, TfdA family protein
1439	 66.57	0	1752604..1753659	+	351	76819841	-	BURPS1710b_A1441	-	hypothetical protein
1440	 71.95	0	1753826..1755151	+	441	76817620	dgoT	BURPS1710b_A1442	-	major facilitator family transporter
1441	 72.86	0	1755174..1755770	+	198	76818093	-	BURPS1710b_A1443	-	hypothetical protein
1442	 70.68	0	1755767..1756489	+	240	76818995	-	BURPS1710b_A1444	-	DSBA-like thioredoxin domain-containing protein
1443	 67.45	0	1756998..1759934	+	978	76819425	-	BURPS1710b_A1445	-	molybdopterin oxidoreductase family protein
1444	 68.42	0	1759948..1760745	+	265	76818979	-	BURPS1710b_A1446	-	iron-sulfur cluster-binding protein
1445	 71.50	0	1760803..1761753	+	316	76819527	-	BURPS1710b_A1447	-	DMSO reductase chain C
1446	 71.06	0	1762568..1763704	+	378	76817837	-	BURPS1710b_A1448	-	polysaccharide deacetylase family protein
1447	 65.74	0	1763649..1763756	+	35	76819788	-	BURPS1710b_A1449	-	hypothetical protein
1448	 71.72	0	1763701..1765560	+	619	76817615	-	BURPS1710b_A1450	-	hypothetical protein
1449	 71.01	0	1765753..1768539	-	928	76817349	ponA	BURPS1710b_A1451	-	penicillin-binding protein
1450	 71.77	0	1769020..1770588	-	522	76819036	-	BURPS1710b_A1452	-	disulphide-isomerase
1451	 65.27	0	1771288..1772580	-	430	76818793	-	BURPS1710b_A1453	-	outer membrane porin
1452	 74.86	+1	1772786..1774372	-	528	76819205	gatAX	BURPS1710b_A1454	-	amidase
1453	 66.67	0	1774807..1775130	+	107	76817645	-	BURPS1710b_A1455	-	hypothetical protein
1454	 75.00	+1	1775322..1775897	-	191	76817246	-	BURPS1710b_A1456	-	acetyltransferase
1455	 75.81	+1	1775894..1776451	-	185	76817993	-	BURPS1710b_A1457	-	acetyltransferase
1456	 72.54	0	1776456..1777817	-	453	76818715	-	BURPS1710b_A1458	-	hypothetical protein
1457	 71.62	0	1777817..1779250	-	477	76818148	-	BURPS1710b_A1459	-	TldD/PmbA family protein
1458	 59.55	-2	1779844..1780419	-	191	76818331	tnp	BURPS1710b_A1460	-	ISBma1, transposase
1459	 64.76	0	1780416..1780940	-	174	76818893	tnpA	BURPS1710b_A1461	-	transposase
1460	 69.09	0	1781778..1783178	+	466	76819799	-	BURPS1710b_A1462	-	sensor kinase protein
1461	 67.75	0	1783175..1783822	+	215	76817735	-	BURPS1710b_A1463	-	LuxR family DNA-binding response regulator
1462	 66.16	0	1784016..1784612	-	198	76817980	-	BURPS1710b_A1464	-	hypothetical protein
1463	 66.67	0	1784905..1785612	-	235	76818553	-	BURPS1710b_A1465	-	hypothetical protein
1464	 66.67	0	1785679..1788081	-	800	76818072	-	BURPS1710b_A1466	-	sensory box protein
1465	 67.84	0	1788437..1789540	-	367	76818459	-	BURPS1710b_A1467	-	lipase
1466	 72.95	0	1789634..1790461	-	275	76819288	hetI	BURPS1710b_A1468	-	4'-phosphopantetheinyl transferase superfamily protein
1467	 67.92	0	1790461..1790859	-	132	76818947	-	BURPS1710b_A1469	-	hypothetical protein
1468	 69.83	0	1790899..1792956	-	685	76819524	-	BURPS1710b_A1470	-	hypothetical protein
1469	 66.03	0	1792194..1792976	-	260	76817536	-	BURPS1710b_A1471	-	hypothetical protein
1470	 70.66	0	1793033..1795183	-	716	76818324	-	BURPS1710b_A1472	-	putative permease
1471	 70.66	0	1794460..1795161	-	233	76819244	-	BURPS1710b_A1473	-	ABC-transporter ATP binding protein
1472	 68.35	0	1795161..1796645	-	494	76817556	pedG	BURPS1710b_A1474	-	flavin-binding monooxygenase-like protein
1473	 72.49	0	1796597..1800886	+	1429	76817962	-	BURPS1710b_A1476	-	hypothetical protein
1474	 72.63	0	1796678..1800799	-	1373	76817722	-	BURPS1710b_A1475	-	cytochrome P450 family protein
1475	 71.43	0	1800796..1807617	-	2273	76818988	-	BURPS1710b_A1477	-	beta keto-acyl synthase
1476	 67.09	0	1807721..1809355	-	544	76817860	epoC	BURPS1710b_A1478	-	acyl transferase domain-containing protein
1477	 70.31	0	1809665..1812574	+	969	76817859	-	BURPS1710b_A1479	-	hypothetical protein
1478	 70.36	0	1809851..1812586	-	911	76818433	-	BURPS1710b_A1480	-	hypothetical protein
1479	 69.74	0	1812576..1813550	+	324	76819566	vacJ	BURPS1710b_A1481	-	lipoprotein VacJ
1480	 68.44	0	1813786..1814349	-	187	76818935	pcaC	BURPS1710b_A1482	-	hypothetical protein
1481	 69.86	0	1814378..1815724	-	448	76819066	-	BURPS1710b_A1483	-	hypothetical protein
1482	 72.18	0	1815721..1816791	-	356	76818095	-	BURPS1710b_A1484	-	hypothetical protein
1483	 65.56	0	1816804..1817526	-	240	76817817	glnQ	BURPS1710b_A1485	-	glutamine ABC transporter ATP-binding protein
1484	 64.54	0	1817529..1818185	-	218	76817724	glnP	BURPS1710b_A1486	-	glutamine ABC transporter permease protein
1485	 64.01	-1	1818250..1819002	-	250	76818697	glnH	BURPS1710b_A1487	-	glutamine ABC transporter periplasmic protein
1486	 74.15	+1	1819126..1820061	+	311	76819457	-	BURPS1710b_A1488	-	hypothetical protein
1487	 77.68	+2	1819449..1820156	-	235	76817916	-	BURPS1710b_A1489	-	hypothetical protein
1488	 69.73	0	1820163..1822118	-	651	76818996	shc	BURPS1710b_A1490	-	squalene-hopene cyclase
1489	 69.69	0	1822464..1823291	-	275	76818304	-	BURPS1710b_A1491	-	squalene/phytoene synthase
1490	 71.71	0	1823752..1824762	+	336	76817876	estC	BURPS1710b_A1492	-	esterase EstC
1491	 66.56	0	1824809..1825744	-	311	76817799	-	BURPS1710b_A1493	-	GGDEF domain-containing protein
1492	 68.43	0	1825741..1826364	-	207	76818693	-	BURPS1710b_A1494	-	response regulator
1493	 63.96	-1	1826357..1826983	-	208	76818143	-	BURPS1710b_A1495	-	response regulator
1494	 68.32	0	1827336..1829513	+	725	76817340	-	BURPS1710b_A1496	-	sensor histidine kinase/response regulator
1495	 63.44	-1	1829947..1830504	-	185	76819418	-	BURPS1710b_A1497	-	NADPH-dependent FMN reductase domain-containing protein
1496	 71.90	0	1830739..1830891	-	50	76818836	-	BURPS1710b_A1498	-	hypothetical protein
1497	 63.53	-1	1830868..1831473	+	201	76818237	-	BURPS1710b_A1499	-	RNA polymerase sigma factor
1498	 63.64	-1	1831454..1831651	+	65	76817693	-	BURPS1710b_A1500	-	hypothetical protein
1499	 58.26	-2	1831967..1832323	-	118	76819603	arsC	BURPS1710b_A1502	-	arsenate reductase
1500	 63.77	-1	1831978..1832115	+	45	76819251	-	BURPS1710b_A1501	-	hypothetical protein
1501	 58.37	-2	1832842..1833504	+	220	76818525	-	BURPS1710b_A1503	-	ParA family protein
1502	 60.77	-1	1833529..1834596	+	355	76818177	parB	BURPS1710b_A1504	-	parB family protein
1503	 62.74	-1	1834687..1836138	-	483	76817395	-	BURPS1710b_A1505	-	plasmid replication protein, putative
1504	 62.21	-1	1839078..1840265	+	395	76817845	-	BURPS1710b_A1506	-	hypothetical protein
1505	 64.08	-1	1840359..1841402	-	347	76817293	-	BURPS1710b_A1507	-	phage integrase family protein
1506	 67.98	0	1841565..1841945	-	126	76818973	-	BURPS1710b_A1508	-	hypothetical protein
1507	 68.80	0	1842025..1842633	-	202	76818409	-	BURPS1710b_A1509	-	putative DNA-binding protein
1508	 67.00	0	1842801..1844000	+	399	76819597	kbl	BURPS1710b_A1510	-	2-amino-3-ketobutyrate coenzyme A ligase
1509	 65.47	0	1842825..1845332	-	835	76817407	-	BURPS1710b_A1511	-	hypothetical protein
1510	 64.34	0	1844013..1845044	+	343	76819026	tdh	BURPS1710b_A1512	-	L-threonine 3-dehydrogenase
1511	 66.85	0	1845379..1845936	-	185	76818108	-	BURPS1710b_A1513	-	YceI-like family protein
1512	 61.24	-1	1845962..1846090	+	42	76819568	-	BURPS1710b_A1514	-	hypothetical protein
1513	 70.55	0	1846122..1846739	+	205	76818998	-	BURPS1710b_A1515	-	TetR family transcriptional regulator
1514	 63.55	-1	1846711..1847319	+	202	76818847	-	BURPS1710b_A1516	-	hypothetical protein
1515	 67.16	0	1847541..1848764	-	407	76817603	-	BURPS1710b_A1517	-	succinylglutamate desuccinylase
1516	 67.40	0	1848860..1849945	-	361	76817373	-	BURPS1710b_A1518	-	tartrate dehydrogenase
1517	 67.21	0	1850114..1851031	+	305	76818084	-	BURPS1710b_A1519	-	LysR family transcriptional regulator
1518	 66.96	0	1851580..1852257	+	225	76819185	-	BURPS1710b_A1520	-	hypothetical protein
1519	 65.54	0	1852463..1853086	+	207	76817800	-	BURPS1710b_A1521	-	glutathione S-transferase
1520	 72.55	0	1853521..1853928	-	135	76818055	-	BURPS1710b_A1522	-	hypothetical protein
1521	 66.10	0	1854065..1855303	-	412	76818752	-	BURPS1710b_A1523	-	patatin-like phospholipase
1522	 65.78	0	1855300..1856085	-	261	76817662	bdhA-1	BURPS1710b_A1524	-	3-hydroxybutyrate dehydrogenase
1523	 63.83	-1	1856132..1856872	-	246	76818235	-	BURPS1710b_A1525	-	acetoacetate decarboxylase
1524	 70.75	0	1857292..1857927	+	211	76819224	-	BURPS1710b_A1526	-	PAP2 family protein
1525	 66.67	0	1857950..1858243	-	97	76818655	-	BURPS1710b_A1527	-	hypothetical protein
1526	 68.39	0	1858802..1860544	+	580	76817659	-	BURPS1710b_A1529	-	hypothetical protein
1527	 68.24	0	1858952..1859779	-	275	76818450	mxcB	BURPS1710b_A1528	-	siderophore-interacting protein
1528	 68.65	0	1859819..1860523	-	234	76817865	-	BURPS1710b_A1530	-	PadR-like family regulatory protein
1529	 65.32	0	1860926..1862332	+	468	76817417	-	BURPS1710b_A1531	-	putative cytochrome monooxygenase related protein
1530	 55.22	-2	1862482..1862682	+	66	76819226	-	BURPS1710b_A1532	-	hypothetical protein
1531	 64.55	0	1862856..1863707	+	283	76818650	-	BURPS1710b_A1533	-	hypothetical protein
68.61	MEAN

4.48	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.