IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1710b



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.61 STD DEV: 4.48
Burkholderia pseudomallei 1710b chromosome II, complete sequence - 1..3181762
2611 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1347	 70.68	0	1660536..1661408	-	290	76817656	-	BURPS1710b_A1349	-	hypothetical protein
1348	 70.25	0	1661420..1661977	-	185	76819034	-	BURPS1710b_A1350	-	hypothetical protein
1349	 71.71	0	1662409..1665003	-	864	76819623	-	BURPS1710b_A1351	-	hypothetical protein
1350	 73.50	+1	1665132..1666667	+	511	76819411	-	BURPS1710b_A1353	-	hypothetical protein
1351	 77.49	+1	1665537..1665998	-	153	76817572	priA	BURPS1710b_A1352	-	hypothetical protein
1352	 71.80	0	1666089..1666964	-	291	76818812	-	BURPS1710b_A1354	-	hypothetical protein
1353	 74.36	+1	1666501..1666929	+	142	76818854	-	BURPS1710b_A1355	-	hypothetical protein
1354	 63.83	-1	1666995..1667135	+	46	76819818	-	BURPS1710b_A1356	-	hypothetical protein
1355	 70.51	0	1667529..1668491	+	320	76817332	-	BURPS1710b_A1358	-	hypothetical protein
1356	 69.92	0	1667664..1668308	-	214	76817881	-	BURPS1710b_A1357	-	hypothetical protein
1357	 68.78	0	1668499..1668687	-	62	76817909	-	BURPS1710b_A1359	-	hypothetical protein
1358	 66.67	0	1668896..1669327	+	143	76817462	-	BURPS1710b_A1360	-	CBS domain-containing protein
1359	 69.11	0	1669473..1669964	+	163	76819417	-	BURPS1710b_A1361	-	PRC-barrel domain-containing protein
1360	 71.78	0	1670180..1670629	-	149	76818783	-	BURPS1710b_A1362	-	CheY-like domain-containing protein
1361	 78.71	+2	1670738..1671094	+	118	76818215	-	BURPS1710b_A1363	-	hypothetical protein
1362	 74.89	+1	1671106..1671762	+	218	76817668	-	BURPS1710b_A1364	-	putative DNA glycosylase
1363	 70.15	0	1672165..1673313	+	382	76819792	-	BURPS1710b_A1365	-	putative transport related, membrane protein
1364	 73.80	+1	1673423..1674781	-	452	76818029	-	BURPS1710b_A1366	-	glutathione-dependent formaldehyde dehydrogenase
1365	 72.14	0	1675026..1676396	+	456	76819097	-	BURPS1710b_A1368	-	hypothetical protein
1366	 69.46	0	1675056..1675664	-	202	76817717	-	BURPS1710b_A1367	-	hypothetical protein
1367	 73.93	+1	1675785..1676390	-	201	76818289	-	BURPS1710b_A1369	-	hypothetical protein
1368	 69.58	0	1676428..1677285	-	285	76819701	-	BURPS1710b_A1370	-	short chain dehydrogenase/reductase family oxidoreductase
1369	 77.05	+1	1677300..1677482	-	60	76817994	-	BURPS1710b_A1371	-	hypothetical protein
1370	 73.72	+1	1677496..1678062	-	188	76819129	-	BURPS1710b_A1372	-	hypothetical protein
1371	 66.99	0	1678306..1678611	-	101	76819416	-	BURPS1710b_A1373	-	hypothetical protein
1372	 71.39	0	1678608..1680701	-	697	76817393	-	BURPS1710b_A1375	-	hypothetical protein
1373	 70.06	0	1678772..1679803	-	343	76819616	-	BURPS1710b_A1374	-	short chain dehydrogenase
1374	 72.38	0	1679831..1680355	-	174	76819770	osmY1	BURPS1710b_A1376	-	osmotically inducible protein Y
1375	 72.82	0	1680622..1681953	+	443	76817601	-	BURPS1710b_A1377	-	glycosyl transferase, group 1 family protein
1376	 68.48	0	1681950..1682996	+	348	76818296	rfbB	BURPS1710b_A1378	-	NAD-dependent epimerase/dehydratase family protein
1377	 72.90	0	1683125..1685434	-	769	76817567	-	BURPS1710b_A1379	-	sensory box histidine kinase/response regulator
1378	 73.02	0	1685569..1686261	+	230	76818294	-	BURPS1710b_A1380	-	hypothetical protein
1379	 76.13	+1	1686279..1687187	+	302	76818706	-	BURPS1710b_A1381	-	glycosyl transferase, group 2 family protein
1380	 68.42	0	1687211..1688581	-	456	76819447	-	BURPS1710b_A1382	-	putative sigma-54 interacting response regulator
1381	 64.04	-1	1688682..1689938	+	418	76819836	-	BURPS1710b_A1383	-	putative sigma-54 interacting transcriptional regulator
1382	 68.56	0	1690172..1691122	-	316	76817957	rfaG	BURPS1710b_A1384	-	glycosyltransferase
1383	 74.01	+1	1691112..1692227	-	371	76818321	-	BURPS1710b_A1385	-	ADP-heptose--LPS heptosyltransferase II
1384	 73.75	+1	1692224..1693225	-	333	76819828	-	BURPS1710b_A1386	-	glycosyl transferase, group 2 family protein
1385	 69.97	0	1693222..1694976	-	584	76819822	-	BURPS1710b_A1387	-	carbamoyltransferase family protein
1386	 72.62	0	1694980..1696911	-	643	76818969	-	BURPS1710b_A1388	-	heptosyltransferase family protein
1387	 71.29	0	1696908..1698485	-	525	76818239	-	BURPS1710b_A1389	-	HAD-superfamily hydrolase
1388	 71.96	0	1697522..1698277	-	251	76819460	-	BURPS1710b_A1390	-	short chain dehydrogenase/reductase family oxidoreductase
1389	 71.31	0	1698490..1698984	-	164	76819451	-	BURPS1710b_A1391	-	hypothetical protein
1390	 71.35	0	1698959..1701925	-	988	76818763	-	BURPS1710b_A1392	-	ATP-binding transmembrane ABC transporter protein
1391	 73.72	+1	1702023..1703369	-	448	76817984	-	BURPS1710b_A1393	-	hypothetical protein
1392	 68.82	0	1704000..1705301	-	433	76817801	-	BURPS1710b_A1394	-	phosphatidylserine decarboxylase precursor
1393	 69.79	0	1705409..1707682	+	757	76818037	-	BURPS1710b_A1396	-	hypothetical protein
1394	 67.80	0	1705463..1706170	-	235	76819207	sdhB	BURPS1710b_A1395	-	succinate dehydrogenase iron-sulfur subunit
1395	 70.83	0	1706801..1707688	-	295	76817777	-	BURPS1710b_A1397	-	2-hydroxy-3-oxopropionate reductase
1396	 66.89	0	1707829..1709178	-	449	76818951	-	BURPS1710b_A1398	-	nitrilotriacetate monooxygenase
1397	 67.98	0	1707851..1709368	-	505	76819467	-	BURPS1710b_A1399	-	hypothetical protein
1398	 71.60	0	1709459..1710229	-	256	76817283	mtaA	BURPS1710b_A1400	-	4'-phosphopantetheinyl transferase family protein
1399	 69.38	0	1710492..1711745	-	417	76818946	-	BURPS1710b_A1401	-	oxalate/formate antiporter
1400	 68.75	0	1711765..1711860	-	31	76818801	-	BURPS1710b_A1402	-	hypothetical protein
1401	 73.22	+1	1712108..1712794	-	228	76817370	-	BURPS1710b_A1403	-	flavin reductase domain-containing protein
1402	 71.26	0	1712794..1713294	-	166	76817895	-	BURPS1710b_A1404	-	hypothetical protein
1403	 69.54	0	1712976..1714820	-	614	76819181	-	BURPS1710b_A1405	-	hypothetical protein
1404	 70.27	0	1713488..1714708	-	406	76819174	-	BURPS1710b_A1406	-	hypothetical protein
1405	 70.83	0	1713554..1714753	+	399	76817315	-	BURPS1710b_A1407	-	hypothetical protein
1406	 70.95	0	1715298..1716698	-	466	76818035	lpdA	BURPS1710b_A1408	-	dihydrolipoamide dehydrogenase
1407	 72.06	0	1716703..1718148	-	481	76818033	bkdB	BURPS1710b_A1409	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1408	 68.26	0	1718156..1719160	-	334	76818778	bkdA2	BURPS1710b_A1410	-	2-oxoisovalerate dehydrogenase, E1 component, beta subunit
1409	 67.64	0	1719205..1720437	-	410	76819484	bkdA1	BURPS1710b_A1411	-	2-oxoisovalerate dehydrogenase alpha subunit
1410	 65.45	0	1721558..1722130	+	190	76817619	-	BURPS1710b_A1412	-	hypothetical protein
1411	 69.27	0	1722432..1723547	-	371	76817716	-	BURPS1710b_A1413	-	hypothetical protein
1412	 68.48	0	1723845..1724780	+	311	76818219	-	BURPS1710b_A1414	-	LysR family regulatory protein
1413	 73.77	+1	1724796..1725386	+	196	76818085	-	BURPS1710b_A1416	-	hypothetical protein
1414	 69.11	0	1725018..1725140	-	40	76819113	-	BURPS1710b_A1415	-	hypothetical protein
1415	 70.14	0	1725446..1727344	+	632	76818661	-	BURPS1710b_A1417	-	GMC oxidoreductase family protein
1416	 70.40	0	1727634..1729907	-	757	76819228	fprD	BURPS1710b_A1418	-	pyridine nucleotide-disulphide oxidoreductase family protein
1417	 70.96	0	1730040..1730435	-	131	76819737	-	BURPS1710b_A1419	-	C4-type zinc finger DksA/TraR family protein
1418	 72.11	0	1730767..1731501	+	244	76817588	-	BURPS1710b_A1420	-	hypothetical protein
1419	 73.98	+1	1731790..1733061	+	423	76817511	phaZ	BURPS1710b_A1421	-	intracellular polyhydroxyalkanoate depolymerase
1420	 74.27	+1	1733199..1735118	+	639	76818060	nrdE	BURPS1710b_A1422	-	hypothetical protein
1421	 75.33	+1	1735163..1737043	-	626	76819420	-	BURPS1710b_A1423	-	hypothetical protein
1422	 74.91	+1	1735295..1737004	+	569	76819494	-	BURPS1710b_A1424	-	hypothetical protein
1423	 75.65	+1	1735615..1737417	+	600	76818228	-	BURPS1710b_A1425	-	hypothetical protein
1424	 70.35	0	1737515..1738546	+	343	76819010	-	BURPS1710b_A1426	-	hypothetical protein
1425	 73.27	+1	1738543..1740375	+	610	76818527	-	BURPS1710b_A1427	-	ulfate transporter family protein
1426	 63.03	-1	1740497..1740826	-	109	76817739	-	BURPS1710b_A1428	-	hypothetical protein
1427	 67.77	0	1740830..1741465	-	211	76819482	-	BURPS1710b_A1429	-	CBS domain-containing protein
1428	 71.45	0	1741323..1742702	+	459	76817768	-	BURPS1710b_A1431	-	hypothetical protein
1429	 71.86	0	1741603..1742391	+	262	76818780	-	BURPS1710b_A1430	-	nitroreductase family protein
1430	 61.61	-1	1742461..1742895	-	144	76818032	hsp	BURPS1710b_A1432	-	HSP20/alpha crystallin family protein
1431	 69.08	0	1742705..1744321	-	538	76819724	-	BURPS1710b_A1433	-	hypothetical protein
1432	 68.95	0	1743301..1744440	-	379	76818990	-	BURPS1710b_A1434	-	putative porin protein
1433	 69.82	0	1744508..1746313	-	601	76818360	-	BURPS1710b_A1435	-	medium-chain-fatty-acid--CoA ligase
1434	 74.55	+1	1746615..1749380	-	921	76817917	acoK	BURPS1710b_A1436	-	GerE family regulatory protein
1435	 72.72	0	1749333..1751711	+	792	76817423	-	BURPS1710b_A1438	-	hypothetical protein
1436	 75.14	+1	1749544..1750605	+	353	76819163	-	BURPS1710b_A1437	-	hypothetical protein
1437	 70.33	0	1750708..1751691	+	327	76819341	qor-2	BURPS1710b_A1439	-	quinone oxidoreductase
1438	 69.73	0	1751693..1752541	+	282	76818141	tauD	BURPS1710b_A1440	-	taurine catabolism dioxygenase TauD, TfdA family protein
1439	 66.57	0	1752604..1753659	+	351	76819841	-	BURPS1710b_A1441	-	hypothetical protein
1440	 71.95	0	1753826..1755151	+	441	76817620	dgoT	BURPS1710b_A1442	-	major facilitator family transporter
1441	 72.86	0	1755174..1755770	+	198	76818093	-	BURPS1710b_A1443	-	hypothetical protein
1442	 70.68	0	1755767..1756489	+	240	76818995	-	BURPS1710b_A1444	-	DSBA-like thioredoxin domain-containing protein
1443	 67.45	0	1756998..1759934	+	978	76819425	-	BURPS1710b_A1445	-	molybdopterin oxidoreductase family protein
1444	 68.42	0	1759948..1760745	+	265	76818979	-	BURPS1710b_A1446	-	iron-sulfur cluster-binding protein
1445	 71.50	0	1760803..1761753	+	316	76819527	-	BURPS1710b_A1447	-	DMSO reductase chain C
1446	 71.06	0	1762568..1763704	+	378	76817837	-	BURPS1710b_A1448	-	polysaccharide deacetylase family protein
68.61	MEAN

4.48	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.