IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1710b



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.61 STD DEV: 4.48
Burkholderia pseudomallei 1710b chromosome II, complete sequence - 1..3181762
2611 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1300	 68.99	0	1612679..1613668	-	329	76819427	-	BURPS1710b_A1302	-	hypothetical protein
1301	 67.33	0	1613176..1614237	-	353	76818789	-	BURPS1710b_A1303	-	glycosyl transferase, group 2 family protein
1302	 74.60	+1	1614222..1615646	-	474	76818041	-	BURPS1710b_A1304	-	hypothetical protein
1303	 71.22	0	1615643..1616851	-	402	76818458	-	BURPS1710b_A1305	-	hypothetical protein
1304	 57.31	-2	1618008..1618178	+	56	76818517	pilA	BURPS1710b_A1306	-	putative pilus subunit protein
1305	 63.47	-1	1618285..1618503	+	72	76818831	-	BURPS1710b_A1307	-	putative pilus subunit protein
1306	 71.91	0	1618478..1620478	-	666	76819383	-	BURPS1710b_A1309	-	hypothetical protein
1307	 74.81	+1	1618595..1619134	+	179	76817950	cpaA1	BURPS1710b_A1308	-	type IV prepilin peptidase-like protein
1308	 71.22	0	1619174..1620556	+	460	76817362	-	BURPS1710b_A1310	-	hypothetical protein
1309	 71.63	0	1620602..1621447	+	281	76817358	-	BURPS1710b_A1311	-	pilus assembly transmembrane protein
1310	 74.77	+1	1621561..1623633	+	690	76819084	-	BURPS1710b_A1312	-	phospholipid-binding domain-containing protein
1311	 68.60	0	1623639..1625807	+	722	76818230	-	BURPS1710b_A1313	-	hypothetical protein
1312	 70.35	0	1625804..1626265	+	153	76817714	-	BURPS1710b_A1314	-	hypothetical protein
1313	 71.05	0	1626288..1627496	+	402	76819415	cpaE1	BURPS1710b_A1315	-	flp pilus assembly protein, ATPase
1314	 67.18	0	1627518..1628885	+	455	76818351	cpaF1	BURPS1710b_A1316	-	type II secretion system protein
1315	 67.79	0	1628912..1629889	+	325	76818607	-	BURPS1710b_A1317	-	Flp pilus assembly protein TadB
1316	 70.00	0	1629944..1630903	+	319	76819357	tadC	BURPS1710b_A1318	-	type II secretion system protein
1317	 64.19	0	1631351..1631875	-	174	76818736	-	BURPS1710b_A1319	-	transcription regulator AsnC
1318	 71.62	0	1631900..1633372	-	490	76819446	wbpN	BURPS1710b_A1320	-	WbpN
1319	 70.53	0	1632062..1633279	+	405	162210117	tyrB2	BURPS1710b_A1321	-	aromatic amino acid aminotransferase
1320	 72.77	0	1633503..1633895	+	130	76818375	-	BURPS1710b_A1322	-	translation initiation inhibitor
1321	 69.93	0	1634063..1635136	+	357	76818404	-	BURPS1710b_A1323	-	outer membrane porin protein precursor
1322	 68.27	0	1635216..1636646	+	476	76818902	-	BURPS1710b_A1324	-	amino acid transporter
1323	 71.40	0	1636723..1637862	-	379	76817380	-	BURPS1710b_A1325	-	GntR family regulatory protein
1324	 71.87	0	1637984..1639540	-	518	76819629	-	BURPS1710b_A1326	-	MlrC C-terminus family protein
1325	 66.44	0	1639519..1640826	-	435	76819802	ttuB	BURPS1710b_A1327	-	major facilitator family transporter
1326	 64.37	0	1640955..1641869	+	304	76819189	-	BURPS1710b_A1328	-	LysR family transcriptional regulator
1327	 67.79	0	1641921..1644686	+	921	76818903	-	BURPS1710b_A1330	-	hypothetical protein
1328	 68.45	0	1642161..1644287	-	708	76818319	-	BURPS1710b_A1329	-	hypothetical protein
1329	 47.47	-2	1644435..1644533	-	32	76819043	-	BURPS1710b_A1331	-	hypothetical protein
1330	 72.45	0	1644718..1645599	+	293	76817437	-	BURPS1710b_A1333	-	hypothetical protein
1331	 77.21	+1	1644921..1645214	+	97	76819612	-	BURPS1710b_A1332	-	hypothetical protein
1332	 71.82	0	1645646..1646965	+	439	76818184	-	BURPS1710b_A1334	-	Na+/H+ antiporter-like protein
1333	 72.31	0	1647681..1650623	-	980	76817871	-	BURPS1710b_A1335	-	ATP-dependent DNA ligase
1334	 71.99	0	1650585..1653158	+	857	76817442	-	BURPS1710b_A1338	-	hypothetical protein
1335	 70.81	0	1650723..1651181	-	152	76818277	-	BURPS1710b_A1336	-	ATP-dependent DNA ligase
1336	 70.92	0	1651251..1652354	-	367	76817294	-	BURPS1710b_A1337	-	Ku70/Ku80 beta-barrel domain-containing protein
1337	 70.04	0	1652436..1652939	-	167	76819312	-	BURPS1710b_A1339	-	hypothetical protein
1338	 68.88	0	1652962..1655088	-	708	76818162	katE	BURPS1710b_A1340	-	hydroperoxidase II
1339	 75.47	+1	1655143..1655721	+	192	76818509	-	BURPS1710b_A1341	-	hypothetical protein
1340	 73.61	+1	1655224..1655655	-	143	76819265	-	BURPS1710b_A1342	-	hypothetical protein
1341	 63.33	-1	1655690..1655899	-	69	76818540	-	BURPS1710b_A1343	-	hypothetical protein
1342	 65.50	0	1655896..1656153	-	85	76817763	-	BURPS1710b_A1344	-	hypothetical protein
1343	 70.05	0	1656150..1657625	-	491	76819614	rpoN	BURPS1710b_A1345	-	RNA polymerase factor sigma-54
1344	 69.23	0	1657590..1659344	+	584	76819429	-	BURPS1710b_A1346	-	hypothetical protein
1345	 68.94	0	1658119..1659087	+	322	76817553	-	BURPS1710b_A1347	-	putative lipoprotein
1346	 68.34	0	1659146..1660042	+	298	76819542	-	BURPS1710b_A1348	-	DNA mismatch endonuclease
1347	 70.68	0	1660536..1661408	-	290	76817656	-	BURPS1710b_A1349	-	hypothetical protein
1348	 70.25	0	1661420..1661977	-	185	76819034	-	BURPS1710b_A1350	-	hypothetical protein
1349	 71.71	0	1662409..1665003	-	864	76819623	-	BURPS1710b_A1351	-	hypothetical protein
1350	 73.50	+1	1665132..1666667	+	511	76819411	-	BURPS1710b_A1353	-	hypothetical protein
1351	 77.49	+1	1665537..1665998	-	153	76817572	priA	BURPS1710b_A1352	-	hypothetical protein
1352	 71.80	0	1666089..1666964	-	291	76818812	-	BURPS1710b_A1354	-	hypothetical protein
1353	 74.36	+1	1666501..1666929	+	142	76818854	-	BURPS1710b_A1355	-	hypothetical protein
1354	 63.83	-1	1666995..1667135	+	46	76819818	-	BURPS1710b_A1356	-	hypothetical protein
1355	 70.51	0	1667529..1668491	+	320	76817332	-	BURPS1710b_A1358	-	hypothetical protein
1356	 69.92	0	1667664..1668308	-	214	76817881	-	BURPS1710b_A1357	-	hypothetical protein
1357	 68.78	0	1668499..1668687	-	62	76817909	-	BURPS1710b_A1359	-	hypothetical protein
1358	 66.67	0	1668896..1669327	+	143	76817462	-	BURPS1710b_A1360	-	CBS domain-containing protein
1359	 69.11	0	1669473..1669964	+	163	76819417	-	BURPS1710b_A1361	-	PRC-barrel domain-containing protein
1360	 71.78	0	1670180..1670629	-	149	76818783	-	BURPS1710b_A1362	-	CheY-like domain-containing protein
1361	 78.71	+2	1670738..1671094	+	118	76818215	-	BURPS1710b_A1363	-	hypothetical protein
1362	 74.89	+1	1671106..1671762	+	218	76817668	-	BURPS1710b_A1364	-	putative DNA glycosylase
1363	 70.15	0	1672165..1673313	+	382	76819792	-	BURPS1710b_A1365	-	putative transport related, membrane protein
1364	 73.80	+1	1673423..1674781	-	452	76818029	-	BURPS1710b_A1366	-	glutathione-dependent formaldehyde dehydrogenase
1365	 72.14	0	1675026..1676396	+	456	76819097	-	BURPS1710b_A1368	-	hypothetical protein
1366	 69.46	0	1675056..1675664	-	202	76817717	-	BURPS1710b_A1367	-	hypothetical protein
1367	 73.93	+1	1675785..1676390	-	201	76818289	-	BURPS1710b_A1369	-	hypothetical protein
1368	 69.58	0	1676428..1677285	-	285	76819701	-	BURPS1710b_A1370	-	short chain dehydrogenase/reductase family oxidoreductase
1369	 77.05	+1	1677300..1677482	-	60	76817994	-	BURPS1710b_A1371	-	hypothetical protein
1370	 73.72	+1	1677496..1678062	-	188	76819129	-	BURPS1710b_A1372	-	hypothetical protein
1371	 66.99	0	1678306..1678611	-	101	76819416	-	BURPS1710b_A1373	-	hypothetical protein
1372	 71.39	0	1678608..1680701	-	697	76817393	-	BURPS1710b_A1375	-	hypothetical protein
1373	 70.06	0	1678772..1679803	-	343	76819616	-	BURPS1710b_A1374	-	short chain dehydrogenase
1374	 72.38	0	1679831..1680355	-	174	76819770	osmY1	BURPS1710b_A1376	-	osmotically inducible protein Y
1375	 72.82	0	1680622..1681953	+	443	76817601	-	BURPS1710b_A1377	-	glycosyl transferase, group 1 family protein
1376	 68.48	0	1681950..1682996	+	348	76818296	rfbB	BURPS1710b_A1378	-	NAD-dependent epimerase/dehydratase family protein
1377	 72.90	0	1683125..1685434	-	769	76817567	-	BURPS1710b_A1379	-	sensory box histidine kinase/response regulator
1378	 73.02	0	1685569..1686261	+	230	76818294	-	BURPS1710b_A1380	-	hypothetical protein
1379	 76.13	+1	1686279..1687187	+	302	76818706	-	BURPS1710b_A1381	-	glycosyl transferase, group 2 family protein
1380	 68.42	0	1687211..1688581	-	456	76819447	-	BURPS1710b_A1382	-	putative sigma-54 interacting response regulator
1381	 64.04	-1	1688682..1689938	+	418	76819836	-	BURPS1710b_A1383	-	putative sigma-54 interacting transcriptional regulator
1382	 68.56	0	1690172..1691122	-	316	76817957	rfaG	BURPS1710b_A1384	-	glycosyltransferase
1383	 74.01	+1	1691112..1692227	-	371	76818321	-	BURPS1710b_A1385	-	ADP-heptose--LPS heptosyltransferase II
1384	 73.75	+1	1692224..1693225	-	333	76819828	-	BURPS1710b_A1386	-	glycosyl transferase, group 2 family protein
1385	 69.97	0	1693222..1694976	-	584	76819822	-	BURPS1710b_A1387	-	carbamoyltransferase family protein
1386	 72.62	0	1694980..1696911	-	643	76818969	-	BURPS1710b_A1388	-	heptosyltransferase family protein
1387	 71.29	0	1696908..1698485	-	525	76818239	-	BURPS1710b_A1389	-	HAD-superfamily hydrolase
1388	 71.96	0	1697522..1698277	-	251	76819460	-	BURPS1710b_A1390	-	short chain dehydrogenase/reductase family oxidoreductase
1389	 71.31	0	1698490..1698984	-	164	76819451	-	BURPS1710b_A1391	-	hypothetical protein
1390	 71.35	0	1698959..1701925	-	988	76818763	-	BURPS1710b_A1392	-	ATP-binding transmembrane ABC transporter protein
1391	 73.72	+1	1702023..1703369	-	448	76817984	-	BURPS1710b_A1393	-	hypothetical protein
1392	 68.82	0	1704000..1705301	-	433	76817801	-	BURPS1710b_A1394	-	phosphatidylserine decarboxylase precursor
1393	 69.79	0	1705409..1707682	+	757	76818037	-	BURPS1710b_A1396	-	hypothetical protein
1394	 67.80	0	1705463..1706170	-	235	76819207	sdhB	BURPS1710b_A1395	-	succinate dehydrogenase iron-sulfur subunit
1395	 70.83	0	1706801..1707688	-	295	76817777	-	BURPS1710b_A1397	-	2-hydroxy-3-oxopropionate reductase
1396	 66.89	0	1707829..1709178	-	449	76818951	-	BURPS1710b_A1398	-	nitrilotriacetate monooxygenase
1397	 67.98	0	1707851..1709368	-	505	76819467	-	BURPS1710b_A1399	-	hypothetical protein
1398	 71.60	0	1709459..1710229	-	256	76817283	mtaA	BURPS1710b_A1400	-	4'-phosphopantetheinyl transferase family protein
1399	 69.38	0	1710492..1711745	-	417	76818946	-	BURPS1710b_A1401	-	oxalate/formate antiporter
68.61	MEAN

4.48	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.