IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1710b



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.61 STD DEV: 4.48
Burkholderia pseudomallei 1710b chromosome II, complete sequence - 1..3181762
2611 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1118	 63.16	-1	1402341..1402967	+	208	76818612	tISRso7	BURPS1710b_A1119	-	ISRSO7-transposase protein
1119	 67.82	0	1403189..1405006	-	605	76818506	glmS	BURPS1710b_A1120	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
1120	 70.23	0	1405013..1406134	-	373	76817476	-	BURPS1710b_A1121	-	hypothetical protein
1121	 64.31	0	1406227..1408347	-	706	76819345	-	BURPS1710b_A1122	-	putative outer membrane protein
1122	 72.13	0	1407722..1407904	+	60	76818129	-	BURPS1710b_A1123	-	hypothetical protein
1123	 68.89	0	1408633..1410747	-	704	76818221	-	BURPS1710b_A1125	-	hypothetical protein
1124	 67.03	0	1408677..1409492	-	271	76819241	-	BURPS1710b_A1124	-	hypothetical protein
1125	 70.35	0	1409103..1410869	+	588	76818880	-	BURPS1710b_A1126	-	hypothetical protein
1126	 70.01	0	1409505..1410761	-	418	76817524	-	BURPS1710b_A1127	-	hypothetical protein
1127	 74.87	+1	1410775..1411749	-	324	76818326	-	BURPS1710b_A1128	-	hypothetical protein
1128	 69.73	0	1411771..1413759	-	662	76819752	-	BURPS1710b_A1129	-	putative inner membrane glycosyltransferase
1129	 75.69	+1	1414064..1414351	+	95	76817733	-	BURPS1710b_A1130	-	hypothetical protein
1130	 68.31	0	1414589..1415803	+	404	76818654	-	BURPS1710b_A1131	-	UDP-N-acetylglucosamine 2-epimerase
1131	 78.53	+2	1415867..1416043	+	58	76819191	-	BURPS1710b_A1132	-	hypothetical protein
1132	 73.07	0	1417072..1417977	-	301	76818701	lysR	BURPS1710b_A1134	-	LysR family transcriptional regulator
1133	 66.40	0	1418089..1418844	+	251	76819266	-	BURPS1710b_A1135	-	TerC family membrane protein
1134	 65.77	0	1418988..1419320	+	110	76819611	-	BURPS1710b_A1136	-	hypothetical protein
1135	 73.12	+1	1419355..1419540	+	61	76818892	-	BURPS1710b_A1137	-	hypothetical protein
1136	 70.16	0	1419558..1419986	+	142	76818440	-	BURPS1710b_A1138	-	hypothetical protein
1137	 66.39	0	1420206..1421627	-	473	76817762	-	BURPS1710b_A1139	-	pyridoxal-dependent decarboxylase domain-containing protein
1138	 65.38	0	1422034..1422732	+	232	76818674	-	BURPS1710b_A1140	-	lectin
1139	 74.24	+1	1423096..1423359	+	87	76817949	-	BURPS1710b_A1141	-	hypothetical protein
1140	 69.46	0	1423371..1424624	-	417	76817870	-	BURPS1710b_A1142	-	alcohol dehydrogenase
1141	 66.95	0	1425112..1426533	-	473	76819746	-	BURPS1710b_A1143	-	pyridoxal-dependent decarboxylase domain-containing protein
1142	 69.76	0	1426911..1428524	-	537	76818745	-	BURPS1710b_A1144	-	xylulose kinase
1143	 67.08	0	1429644..1432085	+	813	76817732	-	BURPS1710b_A1146	-	hypothetical protein
1144	 67.11	0	1429731..1430405	-	224	76817999	-	BURPS1710b_A1145	-	TetR family transcriptional regulator
1145	 67.86	0	1430601..1431773	-	390	76819289	-	BURPS1710b_A1147	-	acyl-CoA dehydrogenase
1146	 69.44	0	1431989..1432960	+	323	76818202	-	BURPS1710b_A1148	-	short chain dehydrogenase/reductase family oxidoreductase
1147	 69.76	0	1432962..1434578	+	538	76818723	-	BURPS1710b_A1149	-	acetyl-CoA carboxylase carboxyltransferase
1148	 66.49	0	1434591..1435742	+	383	76818683	-	BURPS1710b_A1150	-	acyl-CoA dehydrogenase
1149	 74.28	+1	1435739..1438600	+	953	76817519	-	BURPS1710b_A1152	-	carbamoyl-phosphate synthase L subunit
1150	 77.11	+1	1435749..1436591	+	280	76819358	-	BURPS1710b_A1151	-	enoyl-CoA hydratase
1151	 69.38	0	1438635..1439519	+	294	76817578	-	BURPS1710b_A1153	-	hypothetical protein
1152	 69.39	0	1439747..1441543	+	598	76819630	-	BURPS1710b_A1154	-	putative AMP-binding acetyl-CoA synthetase
1153	 70.26	0	1439810..1442038	-	742	76818867	-	BURPS1710b_A1155	-	hypothetical protein
1154	 68.21	0	1442524..1443558	+	344	76819514	-	BURPS1710b_A1156	-	JamB
1155	 63.16	-1	1443584..1443868	+	94	76819426	-	BURPS1710b_A1157	-	putative polyketide synthase subunit
1156	 66.03	0	1443881..1444816	+	311	76817478	-	BURPS1710b_A1158	-	cyclopropane-fatty-acyl-phospholipid synthase-like protein
1157	 72.81	0	1444813..1445853	+	346	76818174	-	BURPS1710b_A1159	-	JamB
1158	 68.22	0	1445762..1446919	+	385	76818264	-	BURPS1710b_A1160	-	amidohydrolase
1159	 69.69	0	1446916..1448769	+	617	76819464	safB	BURPS1710b_A1161	-	saframycin Mx1 synthetase B
1160	 65.17	0	1448603..1449202	+	199	76819726	-	BURPS1710b_A1162	-	thioesterase family protein
1161	 69.76	0	1449275..1450180	+	301	76817684	-	BURPS1710b_A1163	-	hydrolase alpha/beta fold domain-containing protein
1162	 62.93	-1	1450659..1451246	+	195	76818554	-	BURPS1710b_A1164	-	hypothetical protein
1163	 64.06	-1	1451483..1452211	+	242	76819279	-	BURPS1710b_A1165	-	putative IS element transposase
1164	 61.87	-1	1453415..1454248	-	277	76819343	tISRso14b	BURPS1710b_A1166	-	IS407A, transposase OrfB
1165	 56.44	-2	1454272..1454535	-	87	76817472	tISRso14a	BURPS1710b_A1167	-	IS407A, transposase OrfA
1166	 64.31	0	1454566..1455159	-	197	76817753	-	BURPS1710b_A1168	-	putative DNA-binding protein
1167	 62.52	-1	1455159..1456919	-	586	76818603	fhaC	BURPS1710b_A1169	-	outer membrane hemolysin activator protein
1168	 63.19	-1	1457362..1466787	-	3141	76819638	fhaB2	BURPS1710b_A1170	-	adhesin/hemolysin
1169	 60.66	-1	1467992..1472623	-	1543	76817789	rhsA2	BURPS1710b_A1171	-	rhsD protein
1170	 64.85	0	1472637..1473905	-	422	76818150	-	BURPS1710b_A1172	-	hypothetical protein
1171	 64.17	0	1473921..1476125	-	734	76818861	-	BURPS1710b_A1173	-	Rhs element Vgr protein
1172	 59.83	-1	1476122..1476238	-	38	76817474	-	BURPS1710b_A1174	-	hypothetical protein
1173	 62.24	-1	1476995..1477288	+	97	76818086	-	BURPS1710b_A1175	-	hypothetical protein
1174	 64.42	0	1477582..1478070	-	162	76818384	tnpC	BURPS1710b_A1176	-	TnpC protein
1175	 63.22	-1	1478100..1478447	-	115	76817967	tnpB	BURPS1710b_A1177	-	70 kDa peroxisomal membrane protein
1176	 64.65	0	1478444..1478839	-	131	76818566	-	BURPS1710b_A1178	-	putative DNA-binding protein
1177	 47.10	-2	1479284..1481251	-	655	76819294	-	BURPS1710b_A1179	-	hypothetical protein
1178	 42.71	-2	1481370..1481465	+	31	76818121	-	BURPS1710b_A1180	-	hypothetical protein
1179	 57.73	-2	1481558..1483729	-	723	76819025	rafA	BURPS1710b_A1181	-	alpha-galactosidase
1180	 53.52	-2	1483734..1484585	-	283	76819535	-	BURPS1710b_A1182	-	ABC transporter, permease protein
1181	 54.76	-2	1484586..1485509	-	307	76817821	-	BURPS1710b_A1183	-	ABC transporter, permease protein
1182	 53.22	-2	1485572..1486813	-	413	76817752	-	BURPS1710b_A1184	-	ABC transporter, substrate-binding protein
1183	 58.31	-2	1486849..1488093	-	414	76817968	-	BURPS1710b_A1185	-	maltose/maltodextrin import ATP-binding protein malK
1184	 57.12	-2	1488447..1490195	-	582	76819381	-	BURPS1710b_A1186	-	hypothetical protein
1185	 56.54	-2	1490546..1491700	-	384	76818590	-	BURPS1710b_A1187	-	LacI family regulatory protein
1186	 59.30	-2	1492009..1492266	+	85	76818286	tnpA	BURPS1710b_A1188	-	Tn501 transposition transposase
1187	 62.65	-1	1493037..1493783	+	248	76817438	-	BURPS1710b_A1189	-	hypothetical protein
1188	 62.14	-1	1494243..1494839	+	198	76818748	-	BURPS1710b_A1190	-	invertase/recombinase protein
1189	 62.21	-1	1494515..1495792	-	425	76819503	rhsA2	BURPS1710b_A1191	-	YD repeat-containing protein
1190	 64.56	0	1495734..1496444	-	236	76818332	-	BURPS1710b_A1192	-	hypothetical protein
1191	 65.07	0	1496460..1498655	-	731	76817766	-	BURPS1710b_A1193	-	Rhs element Vgr protein
1192	 70.45	0	1498661..1501327	-	888	76819843	-	BURPS1710b_A1194	-	SciG protein
1193	 72.55	0	1501306..1502784	-	492	76817888	-	BURPS1710b_A1195	-	hypothetical protein
1194	 71.31	0	1502781..1504652	-	623	76819652	-	BURPS1710b_A1196	-	hypothetical protein
1195	 73.44	+1	1504657..1505217	-	186	76818158	-	BURPS1710b_A1197	-	hypothetical protein
1196	 64.84	0	1505236..1505727	-	163	76819304	-	BURPS1710b_A1198	-	hypothetical protein
1197	 65.67	0	1505787..1507295	-	502	76818570	-	BURPS1710b_A1199	-	hypothetical protein
1198	 66.15	0	1507288..1507866	-	192	76818502	-	BURPS1710b_A1200	-	hypothetical protein
1199	 73.06	0	1507929..1509008	-	359	76817764	-	BURPS1710b_A1201	-	ImpA-like N-terminal family protein
1200	 74.17	+1	1509061..1511712	-	883	76817651	-	BURPS1710b_A1202	-	serine/threonine protein kinase
1201	 74.39	+1	1511923..1512828	-	301	76819515	-	BURPS1710b_A1203	-	hypothetical protein
1202	 70.91	0	1512834..1516463	-	1209	76818019	-	BURPS1710b_A1204	-	SciS protein
1203	 71.48	0	1516445..1518211	+	588	76818860	-	BURPS1710b_A1206	-	hypothetical protein
1204	 72.89	0	1516466..1517782	-	438	76817452	-	BURPS1710b_A1205	-	hypothetical protein
1205	 70.26	0	1517798..1519162	-	454	76818810	-	BURPS1710b_A1207	-	ImpJ
1206	 64.58	0	1519198..1519773	-	191	76817500	-	BURPS1710b_A1208	-	putative lipoprotein
1207	 59.18	-2	1520224..1520757	+	177	76819333	-	BURPS1710b_A1209	-	putative lipoprotein
1208	 71.68	0	1520812..1522248	+	478	76819320	-	BURPS1710b_A1210	-	FHA domain-containing protein
1209	 71.82	0	1522291..1524057	-	588	76818562	-	BURPS1710b_A1211	-	hypothetical protein
1210	 72.12	0	1522345..1524399	+	684	76818475	-	BURPS1710b_A1212	-	hypothetical protein
1211	 68.09	0	1523993..1524484	+	163	76817737	-	BURPS1710b_A1213	-	hypothetical protein
1212	 65.46	0	1524664..1525908	+	414	76818895	-	BURPS1710b_A1214	-	hypothetical protein
1213	 69.91	0	1525981..1526535	+	184	76817243	-	BURPS1710b_A1215	-	chorismate lyase superfamily protein
1214	 69.11	0	1526471..1527247	-	258	76817469	-	BURPS1710b_A1217	-	protamine P1
1215	 69.49	0	1526584..1526760	+	58	76817976	-	BURPS1710b_A1216	-	hypothetical protein
1216	 70.78	0	1527292..1527996	-	234	76818672	fabG	BURPS1710b_A1218	-	short chain dehydrogenase/reductase family oxidoreductase
1217	 72.35	0	1528178..1529092	+	304	76819263	-	BURPS1710b_A1219	-	LysR family transcriptional regulator
68.61	MEAN

4.48	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.