IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei 1710b



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.61 STD DEV: 4.48
Burkholderia pseudomallei 1710b chromosome II, complete sequence - 1..3181762
2611 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1002	 72.56	0	1268159..1269397	-	412	76819306	-	BURPS1710b_A1003	-	carboxylesterase family protein
1003	 73.25	+1	1269450..1269935	+	161	76819332	-	BURPS1710b_A1004	-	MarR family transcriptional regulator
1004	 69.98	0	1269932..1270504	+	190	76818798	-	BURPS1710b_A1005	-	isochorismatase family protein
1005	 74.83	+1	1270527..1271579	+	350	76817285	-	BURPS1710b_A1006	-	hypothetical protein
1006	 72.65	0	1271539..1271772	-	77	76819142	-	BURPS1710b_A1007	-	hypothetical protein
1007	 68.05	0	1271939..1275469	+	1176	76819702	-	BURPS1710b_A1009	-	hypothetical protein
1008	 68.26	0	1272240..1273679	+	479	76817907	-	BURPS1710b_A1008	-	BNR/Asp-box repeat-containing protein
1009	 66.09	0	1273934..1275496	-	520	76819064	lysP	BURPS1710b_A1010	-	lysine-specific permease
1010	 67.49	0	1275674..1275916	+	80	76817616	-	BURPS1710b_A1011	-	hypothetical protein
1011	 65.15	0	1276136..1276990	-	284	76818844	-	BURPS1710b_A1012	-	hypothetical protein
1012	 69.48	0	1277308..1279119	+	603	76819393	-	BURPS1710b_A1013	-	metallo-beta-lactamase family protein
1013	 65.19	0	1279712..1280458	-	248	76817363	phbB-2	BURPS1710b_A1014	-	acetoacetyl-CoA reductase
1014	 68.42	0	1280553..1280666	+	37	76817925	-	BURPS1710b_A1015	-	hypothetical protein
1015	 66.28	0	1281123..1281905	+	260	76817368	fnrL	BURPS1710b_A1016	-	Crp/FNR family transcriptional regulator
1016	 72.09	0	1281961..1283196	+	411	76817319	-	BURPS1710b_A1017	-	hypothetical protein
1017	 71.73	0	1282111..1283097	-	328	76817915	-	BURPS1710b_A1018	-	alcohol dehydrogenase, zinc-containing
1018	 68.42	0	1283097..1283324	-	75	76819449	-	BURPS1710b_A1019	-	hypothetical protein
1019	 72.27	0	1283809..1284504	+	231	76817718	-	BURPS1710b_A1020	-	hypothetical protein
1020	 66.67	0	1284878..1285378	-	166	76818299	-	BURPS1710b_A1021	-	hypothetical protein
1021	 70.99	0	1285481..1286428	+	315	76818869	-	BURPS1710b_A1022	-	decarboxylase family protein
1022	 69.15	0	1286862..1287143	+	93	76819103	-	BURPS1710b_A1023	-	hypothetical protein
1023	 72.58	0	1286865..1287236	-	123	76819699	-	BURPS1710b_A1024	-	hypothetical protein
1024	 70.54	0	1287745..1288338	-	197	76819679	-	BURPS1710b_A1025	-	OsmY domain-containing protein
1025	 67.43	0	1288754..1289932	-	392	76817323	-	BURPS1710b_A1026	-	sulfotransferase domain-containing protein
1026	 68.20	0	1288935..1290431	-	498	76818181	-	BURPS1710b_A1027	-	hypothetical protein
1027	 71.01	0	1290230..1291081	-	283	76819814	cysC-2	BURPS1710b_A1028	-	adenylylsulfate kinase
1028	 68.50	0	1291115..1292803	-	562	76818596	-	BURPS1710b_A1029	-	methyl-accepting chemotaxis protein
1029	 68.93	0	1292787..1294640	+	617	76818012	-	BURPS1710b_A1030	-	polysaccharide deacetylase domain-containing protein
1030	 74.75	+1	1294675..1296159	-	494	76817482	-	BURPS1710b_A1031	-	ABC-type export system, outer membrane channel protein
1031	 71.09	0	1296137..1297222	-	361	76817485	-	BURPS1710b_A1032	-	ABC-type export system, membrane fusion protein
1032	 68.10	0	1297219..1297917	-	232	76819276	-	BURPS1710b_A1033	-	ABC transporter, ATP-binding protein
1033	 64.56	0	1297920..1299056	-	378	76818518	devC	BURPS1710b_A1034	-	ABC transporter, permease protein
1034	 69.85	0	1299337..1299807	-	156	76819138	-	BURPS1710b_A1035	-	universal stress protein
1035	 76.70	+1	1300023..1300889	-	288	76817885	-	BURPS1710b_A1036	-	TetR family transcriptional regulator
1036	 71.91	0	1301176..1302702	+	508	76818795	cusC	BURPS1710b_A1037	-	RND efflux system, outer membrane protein
1037	 71.23	0	1302699..1303772	+	357	76819367	-	BURPS1710b_A1038	-	Type I antifreeze protein:HlyD family secretion protein
1038	 70.85	0	1303769..1307017	+	1082	76817959	-	BURPS1710b_A1039	-	RND efflux system, cytoplasmic membrane extrusion protein
1039	 67.20	0	1307020..1308144	+	374	76819634	-	BURPS1710b_A1040	-	ABC transporter, permease
1040	 69.93	0	1308294..1310129	+	611	76817790	cckA	BURPS1710b_A1041	-	sensory box histidine kinase/response regulator
1041	 62.26	-1	1310211..1310369	+	52	76819560	-	BURPS1710b_A1042	-	hypothetical protein
1042	 68.45	0	1310461..1312026	-	521	76817729	-	BURPS1710b_A1043	-	putative methyl-accepting chemotaxis transducer transmembrane protein
1043	 67.69	0	1312003..1313076	+	357	76818104	-	BURPS1710b_A1044	-	hypothetical protein
1044	 64.37	0	1313134..1313700	-	188	76818878	-	BURPS1710b_A1045	-	hypothetical protein
1045	 67.84	0	1313697..1314722	-	341	76818267	adhA	BURPS1710b_A1046	-	alcohol dehydrogenase, zinc-containing
1046	 73.73	+1	1314957..1315805	-	282	76819145	atpG	BURPS1710b_A1047	-	ATP synthase gamma chain
1047	 73.88	+1	1315802..1317796	-	664	76819545	atpA	BURPS1710b_A1048	-	F0F1 ATP synthase subunit alpha
1048	 74.80	+1	1317780..1318529	-	249	76817694	atpF	BURPS1710b_A1049	-	ATP synthase F0, B subunit
1049	 71.47	0	1317820..1319088	+	422	76819500	-	BURPS1710b_A1050	-	hypothetical protein
1050	 68.67	0	1318543..1318791	-	82	76818424	atpE	BURPS1710b_A1051	-	F0F1 ATP synthase subunit C
1051	 68.95	0	1318788..1319489	-	233	76819099	atpB	BURPS1710b_A1052	-	F0F1 ATP synthase subunit A
1052	 74.76	+1	1319486..1319794	-	102	76817310	-	BURPS1710b_A1053	-	hypothetical protein
1053	 78.94	+2	1319787..1320275	-	162	76818943	-	BURPS1710b_A1054	-	F0F1-ATPase subunit, putative
1054	 74.56	+1	1320275..1320730	-	151	76818720	atpC-2	BURPS1710b_A1055	-	F0F1 ATP synthase subunit epsilon
1055	 74.17	+1	1320720..1322306	-	528	76818109	atpD	BURPS1710b_A1056	-	F0F1 ATP synthase subunit beta
1056	 69.16	0	1322532..1324460	+	642	76818966	phbC	BURPS1710b_A1057	-	poly-beta-hydroxybutyrate polymerase
1057	 71.87	0	1324471..1325874	+	467	76817791	-	BURPS1710b_A1058	-	bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
1058	 72.77	0	1325016..1327505	-	829	76819522	-	BURPS1710b_A1059	-	hypothetical protein
1059	 72.26	0	1325871..1327049	+	392	76817389	ackA	BURPS1710b_A1060	-	acetate kinase
1060	 71.88	0	1327512..1329890	+	792	76819402	-	BURPS1710b_A1062	-	hypothetical protein
1061	 72.15	0	1327779..1329200	-	473	76817953	pfk	BURPS1710b_A1061	-	6-phosphofructokinase
1062	 69.60	0	1329213..1329860	-	215	76818788	-	BURPS1710b_A1063	-	OsmY domain-containing protein
1063	 69.82	0	1329532..1330452	+	306	76818792	-	BURPS1710b_A1064	-	hypothetical protein
1064	 67.43	0	1330440..1330832	-	130	76817596	cdd	BURPS1710b_A1065	-	cytidine deaminase
1065	 73.77	+1	1331141..1332463	-	440	162210112	deoA	BURPS1710b_A1066	-	thymidine phosphorylase
1066	 58.89	-2	1333151..1333330	+	59	76819640	-	BURPS1710b_A1067	-	hypothetical protein
1067	 71.52	0	1333630..1334412	-	260	76818898	deoC	BURPS1710b_A1068	-	deoxyribose-phosphate aldolase
1068	 68.94	0	1334426..1335700	-	424	162210107	-	BURPS1710b_A1069	-	nucleoside transporter
1069	 72.17	0	1336242..1338386	-	714	76818536	-	BURPS1710b_A1070	-	pyridoxamine 5'-phosphate oxidase family protein
1070	 71.47	0	1337570..1338214	-	214	76817290	-	BURPS1710b_A1071	-	glutathione S-transferase
1071	 72.74	0	1338488..1339393	+	301	76819314	ptxR	BURPS1710b_A1072	-	LysR family transcriptional regulator
1072	 68.16	0	1339604..1340272	-	222	76817933	-	BURPS1710b_A1073	-	TetR family transcriptional regulator
1073	 70.63	0	1340360..1341268	+	302	76817360	-	BURPS1710b_A1074	-	short chain dehydrogenase/reductase family oxidoreductase
1074	 68.61	0	1341265..1342863	+	532	76817496	ethA	BURPS1710b_A1075	-	monooxygenase flavin-binding family protein
1075	 68.51	0	1342869..1343843	+	324	76817544	-	BURPS1710b_A1076	-	hypothetical protein
1076	 68.37	0	1344514..1346100	+	528	76818246	-	BURPS1710b_A1077	-	GGDEF domain-containing protein
1077	 68.22	0	1346260..1346709	+	149	76817679	-	BURPS1710b_A1078	-	hypothetical protein
1078	 73.33	+1	1347103..1347282	+	59	76819694	-	BURPS1710b_A1079	-	hypothetical protein
1079	 67.41	0	1347279..1349579	+	766	76819123	-	BURPS1710b_A1080	-	sedolisin-B
1080	 71.26	0	1350380..1352143	+	587	76819719	-	BURPS1710b_A1081	-	putative lipoprotein
1081	 70.29	0	1350941..1353535	-	864	76819319	-	BURPS1710b_A1082	-	200 kDa antigen p200, putative
1082	 67.52	0	1352234..1353517	+	427	76817710	-	BURPS1710b_A1083	-	hypothetical protein
1083	 70.36	0	1353807..1355405	+	532	76818265	-	BURPS1710b_A1084	-	hypothetical protein
1084	 69.35	0	1354366..1355709	+	447	76817604	-	BURPS1710b_A1085	-	hypothetical protein
1085	 69.45	0	1355741..1357069	+	442	76818552	-	BURPS1710b_A1086	-	hypothetical protein
1086	 68.15	0	1357194..1359557	+	787	76818152	-	BURPS1710b_A1087	-	exopolysaccharide tyrosine-protein kinase, putative
1087	 66.33	0	1360030..1361220	+	396	76817765	-	BURPS1710b_A1088	-	hypothetical protein
1088	 61.23	-1	1362129..1362404	+	91	76819300	-	BURPS1710b_A1089	-	hypothetical protein
1089	 66.67	0	1362417..1363685	+	422	76818934	-	BURPS1710b_A1090	-	putative cation efflux related membrane protein
1090	 62.49	-1	1364465..1365517	+	350	76818008	-	BURPS1710b_A1091	-	putative deoxyribonuclease
1091	 67.42	0	1365589..1368495	+	968	76819434	-	BURPS1710b_A1092	-	hypothetical protein
1092	 69.48	0	1368492..1369274	+	260	76818622	-	BURPS1710b_A1093	-	hypothetical protein
1093	 68.53	0	1369271..1370074	+	267	76819001	-	BURPS1710b_A1094	-	hypothetical protein
1094	 66.67	0	1370075..1371697	+	540	76819675	-	BURPS1710b_A1095	-	putative phosphesterase
1095	 65.92	0	1371772..1372710	+	312	76818766	-	BURPS1710b_A1096	-	hypothetical protein
1096	 65.11	0	1372733..1373887	+	384	76818169	-	BURPS1710b_A1097	-	hypothetical protein
1097	 66.47	0	1373991..1374986	-	331	76817361	-	BURPS1710b_A1098	-	hypothetical protein
1098	 69.04	0	1375014..1375688	+	224	76817382	-	BURPS1710b_A1099	-	uracil-DNA glycosylase
1099	 70.96	0	1375823..1377967	-	714	76819094	pepX	BURPS1710b_A1100	-	x-prolyl-dipeptidyl aminopeptidase
1100	 70.13	0	1378015..1379517	-	500	76818474	-	BURPS1710b_A1101	-	serine metalloprotease
1101	 67.86	0	1380707..1381042	-	111	76817594	-	BURPS1710b_A1102	-	hypothetical protein
68.61	MEAN

4.48	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.