IslandPath Analysis: Burkholderia pseudomallei K96243



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.43   STD DEV: 4.78
Burkholderia pseudomallei K96243 chromosome 1, complete sequence - 1..4074542
3399 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
797	 68.06	0	924436..925872	+	478	53718436	pykA	BPSL0797	-	pyruvate kinase
798	 65.26	0	926153..927217	+	354	53718437	cbbA	BPSL0798	-	fructose-1,6-bisphosphate aldolase
799	 66.44	0	927407..928297	+	296	53718438	hemH	BPSL0799	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
800	 70.91	0	928333..928851	+	172	53718439	purE	BPSL0800	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
801	 71.60	0	928931..930127	+	398	53718440	purK	BPSL0801	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
802	 73.98	+1	930139..931164	+	341	53718441	-	BPSL0802	-	hypothetical protein
803	 70.09	0	931480..932619	-	379	53718442	-	BPSL0803	-	putative acylhydrolase
804	 64.60	0	932724..933641	-	305	53718443	-	BPSL0804	-	hypothetical protein
805	 71.56	0	934041..935492	-	483	53718444	-	BPSL0805	-	peptidase
806	 69.83	0	935760..936422	+	220	53718445	-	BPSL0806	-	response regulator protein
807	 72.51	+1	936426..937742	+	438	53718446	-	BPSL0807	-	sensor kinase protein
808	 68.64	0	938273..939691	+	472	53718447	-	BPSL0808	-	peptidase
809	 70.21	0	939851..940273	+	140	53718448	-	BPSL0809	-	hypothetical protein
810	 65.85	0	940401..940766	+	121	53718449	-	BPSL0810	-	hypothetical protein
811	 73.25	+1	940794..941522	+	242	53718450	-	BPSL0811	-	hypothetical protein
812	 66.82	0	941844..942479	-	211	53718451	bpeR	BPSL0812	-	TetR family regulatory protein
813	 69.91	0	942889..944151	+	420	53718452	bpeA	BPSL0814	-	RND family acriflavine resistance protein A precursor
814	 65.29	0	944167..947367	+	1066	53718453	bpeB	BPSL0815	-	RND family acriflavine resistance protein
815	 71.33	0	947371..948915	+	514	53718454	oprB	BPSL0816	-	outer membrane efflux protein
816	 64.80	0	949498..950943	-	481	53718455	-	BPSL0817	-	putative permease protein
817	 76.91	+1	951272..952696	+	474	53718456	-	BPSL0818	-	putative sugar kinase protein
818	 69.28	0	952965..953999	-	344	53718457	-	BPSL0819	-	AraC family transcription regulator
819	 64.86	0	954204..955310	+	368	53718458	flhA	BPSL0820	-	glutathione-dependent formaldehyde dehydrogenase
820	 69.69	0	955324..956184	+	286	53718459	fghA	BPSL0821	-	putative S-formylglutathione hydrolase
821	 71.59	0	956329..957120	-	263	53718460	-	BPSL0822	-	putative ABC transporter permease component
822	 71.02	0	957113..957985	-	290	53718461	-	BPSL0823	-	putative ABC transporter ATP-binding component
823	 69.98	0	958008..958883	-	291	53718462	-	BPSL0824	-	putative periplasmic solute-binding protein
824	 69.25	0	959141..959605	-	154	53718463	-	BPSL0825	-	FUR family transcriptional regulator
825	 69.63	0	959899..960675	+	258	53718464	-	BPSL0826	-	sorbitol dehydrogenase
826	 74.09	+1	960680..961636	+	318	53718465	scrK	BPSL0827	-	putative fructokinase
827	 73.48	+1	961624..963120	+	498	53718466	-	BPSL0828	-	putative tagatose 6-phosphate kinase protein
828	 66.97	0	963171..964499	+	442	53718467	-	BPSL0829	-	putative periplasmic ABC transporter substrate-binding component
829	 66.14	0	964607..965551	+	314	53718468	-	BPSL0830	-	putative transmembrane ABC transporter protein
830	 65.74	0	965548..966414	+	288	53718469	-	BPSL0831	-	putative ABC transporter permease protein
831	 74.25	+1	966411..967109	+	232	53718470	-	BPSL0832	-	putative haloacid dehalogenase hydrolase
832	 67.95	0	967116..968282	+	388	53718471	-	BPSL0833	-	putative sugar ABC transporter protein
833	 67.74	0	968501..969802	-	433	53718472	-	BPSL0834	-	hypothetical protein
834	 71.64	0	970247..971131	-	294	53718473	-	BPSL0835	-	LysR family transcriptional regulator
835	 74.60	+1	971269..972465	+	398	53718474	-	BPSL0836	-	peptidase
836	 76.07	+1	972462..973673	+	403	53718475	-	BPSL0837	-	putative transporter protein
837	 71.20	0	973846..974793	-	315	53718476	-	BPSL0838	-	putative transcriptional regulator
838	 74.76	+1	974880..976361	-	493	53718477	dalK	BPSL0839	-	putative carbohydrate kinase
839	 72.63	+1	976472..977914	-	480	53718478	dalD	BPSL0840	-	putative D-arabinitol 4-dehydrogenase
840	 73.55	+1	978086..979000	-	304	53718479	-	BPSL0841	-	LysR family transcriptional regulator
841	 73.27	+1	979101..980720	+	539	53718480	-	BPSL0842	-	benzoylformate decarboxylase
842	 73.07	+1	980842..982293	+	483	53718481	-	BPSL0843	-	aldehyde dehydrogenase family protein
843	 73.95	+1	982322..983254	+	310	53718482	-	BPSL0844	-	putative ketopantoate reductase
844	 73.08	+1	983744..983977	+	77	53718483	-	BPSL0844a	-	hypothetical protein
845	 73.62	+1	983974..985368	+	464	53718484	-	BPSL0845	-	putative transporter protein
846	 68.95	0	985394..986314	-	306	53718485	-	BPSL0846	-	putative tryptophan 2,3-dioxygenase
847	 70.42	0	986413..987663	-	416	53718486	-	BPSL0847	-	hypothetical protein
848	 72.90	+1	987705..988346	-	213	53718487	-	BPSL0848	-	hypothetical protein
849	 65.08	0	988476..988979	+	167	53718488	-	BPSL0849	-	transcription regulator AsnC
850	 66.28	0	988966..989481	-	171	53718489	-	BPSL0850	-	hypothetical protein
851	 65.41	0	989874..990431	+	185	53718490	-	BPSL0851	-	putative peptide methionine sulfoxide reductase
852	 73.02	+1	990788..991951	-	387	53718491	-	BPSL0852	-	hypothetical protein
853	 64.37	0	992374..993594	-	406	53718492	-	BPSL0853	-	putative cyclopropane-fatty-acyl-phospholipid synthase
854	 68.84	0	993726..994370	-	214	161723209	pdxH	BPSL0854	-	pyridoxamine 5'-phosphate oxidase
855	 70.36	0	994504..995370	+	288	53718494	-	BPSL0855	-	ThiF family protein
856	 69.21	0	995643..996548	-	301	53718495	-	BPSL0856	-	putative thioredoxin protein
857	 72.56	+1	996545..997426	-	293	53718496	-	BPSL0857	-	hypothetical protein
858	 70.62	0	997611..998495	+	294	53718497	-	BPSL0858	-	putative permease protein
859	 68.93	0	999015..1000559	-	514	53718498	-	BPSL0859	-	putative N-acetylmuramoyl-L-alanine amidase
860	 69.19	0	1000553..1001107	-	184	53718499	-	BPSL0860	-	putative hydrolase
861	 71.30	0	1001125..1002354	+	409	53718500	-	BPSL0861	-	putative 4Fe-4S cluster-binding ferredoxin protein
862	 66.86	0	1002367..1002891	+	174	53718501	-	BPSL0862	-	putative methylated-DNA--protein-cysteine methyltransferase
863	 68.08	0	1002975..1003892	+	305	161723208	xerD	BPSL0863	-	site-specific tyrosine recombinase XerD
864	 71.52	0	1004177..1005742	-	521	53718503	-	BPSL0864	-	putative AMP-binding enzyme
865	 66.46	0	1005872..1006363	+	163	53718504	-	BPSL0865	-	hypothetical protein
866	 67.16	0	1006472..1007083	+	203	53718505	-	BPSL0866	-	putative glycerol-3-phosphate acyltransferase PlsY
867	 59.05	-1	1007313..1007798	-	161	53718506	-	BPSL0867	-	nucleotide-binding protein
868	 71.24	0	1007935..1008984	+	349	53718507	murB	BPSL0868	-	putative UDP-N-acetylenolpyruvoylglucosamine reductase
869	 63.87	0	1009176..1010105	-	309	53718508	argF	BPSL0869	-	ornithine carbamoyltransferase
870	 59.82	-1	1010519..1010854	+	111	53718509	-	BPSL0870	-	hypothetical protein
871	 63.44	0	1011098..1011376	-	92	53718510	rpsT	BPSL0871	-	30S ribosomal protein S20
872	 66.09	0	1011781..1013331	+	516	53718511	-	BPSL0872	-	MviN-like protein
873	 68.09	0	1013341..1014183	+	280	53718512	-	BPSL0873	-	hypothetical protein
874	 70.36	0	1014452..1015210	-	252	53718513	-	BPSL0874	-	putative short-chain dehydrogenase family protein
875	 65.31	0	1015408..1016070	-	220	53718514	adk	BPSL0875	-	adenylate kinase
876	 70.71	0	1016279..1017070	-	263	161723207	kdsB	BPSL0876	-	3-deoxy-manno-octulosonate cytidylyltransferase
877	 67.63	0	1017244..1017450	-	68	53718516	-	BPSL0877	-	hypothetical protein
878	 73.76	+1	1017431..1018459	-	342	53718517	-	BPSL0878	-	tetraacyldisaccharide 4'-kinase
879	 74.04	+1	1018910..1020292	+	460	53718518	xseA	BPSL0879	-	exodeoxyribonuclease VII large subunit
880	 62.18	-1	1020489..1021067	+	192	53718519	sodB	BPSL0880	-	putative superoxide dismutase
881	 66.59	0	1021502..1022770	+	422	53718520	-	BPSL0881	-	hypothetical protein
882	 74.38	+1	1023539..1024744	-	401	53718521	-	BPSL0882	-	putative chromate transporter protein
883	 70.37	0	1024978..1025733	-	251	53718522	-	BPSL0883	-	putative regulatory protein
884	 70.27	0	1025818..1026345	+	175	53718523	-	BPSL0884	-	hypothetical protein
885	 73.88	+1	1026361..1027386	+	341	53718524	-	BPSL0885	-	2-dehydropantoate 2-reductase
886	 72.44	+1	1027910..1028515	+	201	53718525	-	BPSL0886	-	hypothetical protein
887	 69.18	0	1028626..1029900	-	424	53718526	-	BPSL0887	-	hypothetical protein
888	 67.15	0	1030572..1032011	-	479	53718527	-	BPSL0888	-	putative transporter protein
889	 73.81	+1	1032308..1032643	+	111	53718528	-	BPSL0889	-	hypothetical protein
890	 75.76	+1	1032616..1033968	-	450	53718529	-	BPSL0890	-	putative citrate synthase
891	 65.46	0	1034684..1035430	-	248	53718530	-	BPSL0891	-	GntR family transcriptional regulator
892	 69.03	0	1035599..1036444	+	281	53718531	-	BPSL0892	-	aldo/keto reductase family oxidoreductase
893	 73.09	+1	1036989..1038575	-	528	53718532	-	BPSL0892a	-	putative lipoprotein
894	 65.01	0	1039748..1041862	-	704	53718533	fusA	BPSL0893	-	elongation factor G
895	 67.06	0	1042163..1042672	-	169	53718534	-	BPSL0894	-	hypothetical protein
896	 73.23	+1	1043345..1043923	-	192	53718535	-	BPSL0895	-	putative pseudouridine synthase
67.43	MEAN

4.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.