IslandPath Analysis: Burkholderia pseudomallei K96243



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.43   STD DEV: 4.78
Burkholderia pseudomallei K96243 chromosome 1, complete sequence - 1..4074542
3399 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
740	 59.05	-1	854145..854459	-	104	53718379	-	BPSL0739	-	hypothetical protein
741	 67.27	0	854492..854656	-	54	53718380	-	BPSL0740	-	hypothetical protein
742	 54.48	-2	855094..855651	-	185	53718381	-	BPSL0741	-	hypothetical protein
743	 57.77	-2	855653..856495	-	280	53718382	-	BPSL0742	-	hypothetical protein
744	 64.31	0	856592..857440	-	282	53718383	-	BPSL0743	-	hypothetical protein
745	 62.55	-1	857474..858832	-	452	53718384	-	BPSL0744	-	putative phage-related integrase
746	 60.36	-1	859567..860280	+	237	53718385	-	BPSL0745	-	hypothetical protein
747	 56.47	-2	860669..861031	+	120	53718386	-	BPSL0746	-	hypothetical protein
748	 56.28	-2	861100..862581	+	493	53718387	-	BPSL0747	-	hypothetical protein
749	 59.63	-1	862583..862909	+	108	53718388	-	BPSL0747a	-	hypothetical protein
750	 54.58	-2	863547..864605	+	352	53718389	-	BPSL0748	-	hypothetical protein
751	 57.00	-2	864580..865065	+	161	53718390	-	BPSL0749	-	hypothetical protein
752	 57.21	-2	865065..866873	+	602	53718391	-	BPSL0750	-	hypothetical protein
753	 55.69	-2	867220..868476	+	418	53718392	-	BPSL0751	-	hypothetical protein
754	 57.23	-2	868473..869510	+	345	53718393	-	BPSL0752	-	hypothetical protein
755	 52.92	-2	869736..870419	+	227	53718394	-	BPSL0753	-	hypothetical protein
756	 54.69	-2	873400..873708	-	102	53718395	-	BPSL0756	-	putative DNA-binding protein
757	 58.11	-1	874119..874562	+	147	53718396	-	BPSL0757	-	hypothetical protein
758	 55.64	-2	874574..875362	+	262	53718397	-	BPSL0758	-	putative phosphoesterase
759	 56.16	-2	875636..876130	+	164	53718398	-	BPSL0759	-	hypothetical protein
760	 51.16	-2	876189..876446	+	85	53718399	-	BPSL0760	-	hypothetical protein
761	 58.12	-1	876443..877015	+	190	53718400	-	BPSL0761	-	hypothetical protein
762	 57.12	-2	877250..877804	+	184	53718401	-	BPSL0762	-	putative RNA 2'-phosphotransferase
763	 57.24	-2	878619..881801	+	1060	53718402	-	BPSL0763	-	putative helicase SNF2 family protein
764	 55.22	-2	881805..886049	+	1414	53718403	-	BPSL0764	-	hypothetical protein
765	 58.78	-1	886079..889639	+	1186	53718404	-	BPSL0765	-	putative helicase family protein
766	 57.41	-2	889636..891471	+	611	53718405	-	BPSL0766	-	hypothetical protein
767	 56.43	-2	891474..892274	+	266	53718406	-	BPSL0767	-	putative phospholipase protein
768	 54.83	-2	892358..893590	+	410	53718407	-	BPSL0768	-	hypothetical protein
769	 56.75	-2	893583..894086	+	167	53718408	-	BPSL0769	-	hypothetical protein
770	 55.32	-2	894083..896029	+	648	53718409	-	BPSL0770	-	hypothetical protein
771	 64.56	0	896323..896559	-	78	53718410	-	BPSL0771	-	hypothetical protein
772	 64.60	0	896537..898423	-	628	53718411	-	BPSL0772	-	phage integrase family protein
773	 64.45	0	898930..900600	-	556	53718412	-	BPSL0773	-	putative transmembrane transport protein
774	 70.52	0	900811..902367	-	518	53718413	-	BPSL0774	-	two-component sensor kinase transcriptional regulatory protein
775	 70.03	0	902391..903134	-	247	53718414	-	BPSL0775	-	response regulator transcription regulatory protein
776	 64.05	0	903338..904408	+	356	53718415	recA	BPSL0776	-	recombinase A
777	 68.61	0	904774..905391	+	205	53718416	recX	BPSL0777	-	recombination regulator RecX
778	 68.30	0	905683..906294	+	203	53718417	-	BPSL0778	-	hypothetical protein
779	 63.07	0	906374..907540	+	388	53718418	sucC	BPSL0779	-	succinyl-CoA synthetase subunit beta
780	 64.51	0	907685..908566	+	293	53718419	sucD	BPSL0780	-	succinyl-CoA synthetase subunit alpha
781	 68.14	0	908618..909430	+	270	53718420	-	BPSL0781	-	hypothetical protein
782	 72.45	+1	909649..910167	+	172	53718421	-	BPSL0782	-	putative type 4 fimbrial pilin protein
783	 68.87	0	910375..912192	+	605	53718422	-	BPSL0783	-	hypothetical protein
784	 67.30	0	912788..913261	+	157	53718423	-	BPSL0784	-	hypothetical protein
785	 69.95	0	913498..913863	+	121	53718424	-	BPSL0785	-	putative lipoprotein
786	 68.48	0	914057..914551	-	164	53718425	moaC	BPSL0786	-	molybdenum cofactor biosynthesis protein C
787	 72.81	+1	914698..916422	+	574	53718426	-	BPSL0787	-	hypothetical protein
788	 73.72	+1	916748..917371	-	207	53718427	-	BPSL0788	-	hypothetical protein
789	 71.59	0	917364..918398	-	344	53718428	-	BPSL0789	-	putative hydrolase
790	 67.56	0	918418..918864	-	148	53718429	-	BPSL0790	-	hypothetical protein
791	 68.59	0	918996..920036	-	346	53718430	waaF	BPSL0791	-	putative ADP-heptose--LPS heptosyltransferase II
792	 65.15	0	920164..920361	-	65	53718431	-	BPSL0792	-	hypothetical protein
793	 65.04	0	920427..921350	-	307	53718432	ilvE	BPSL0793	-	branched-chain amino acid aminotransferase
794	 69.07	0	921572..922321	+	249	53718433	-	BPSL0794	-	AzlC family protein
795	 71.60	0	922318..922641	+	107	53718434	-	BPSL0795	-	hypothetical protein
796	 68.51	0	922908..924101	+	397	53718435	pgk	BPSL0796	-	phosphoglycerate kinase
797	 68.06	0	924436..925872	+	478	53718436	pykA	BPSL0797	-	pyruvate kinase
798	 65.26	0	926153..927217	+	354	53718437	cbbA	BPSL0798	-	fructose-1,6-bisphosphate aldolase
799	 66.44	0	927407..928297	+	296	53718438	hemH	BPSL0799	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
800	 70.91	0	928333..928851	+	172	53718439	purE	BPSL0800	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
801	 71.60	0	928931..930127	+	398	53718440	purK	BPSL0801	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
802	 73.98	+1	930139..931164	+	341	53718441	-	BPSL0802	-	hypothetical protein
803	 70.09	0	931480..932619	-	379	53718442	-	BPSL0803	-	putative acylhydrolase
804	 64.60	0	932724..933641	-	305	53718443	-	BPSL0804	-	hypothetical protein
805	 71.56	0	934041..935492	-	483	53718444	-	BPSL0805	-	peptidase
806	 69.83	0	935760..936422	+	220	53718445	-	BPSL0806	-	response regulator protein
807	 72.51	+1	936426..937742	+	438	53718446	-	BPSL0807	-	sensor kinase protein
808	 68.64	0	938273..939691	+	472	53718447	-	BPSL0808	-	peptidase
809	 70.21	0	939851..940273	+	140	53718448	-	BPSL0809	-	hypothetical protein
810	 65.85	0	940401..940766	+	121	53718449	-	BPSL0810	-	hypothetical protein
811	 73.25	+1	940794..941522	+	242	53718450	-	BPSL0811	-	hypothetical protein
812	 66.82	0	941844..942479	-	211	53718451	bpeR	BPSL0812	-	TetR family regulatory protein
813	 69.91	0	942889..944151	+	420	53718452	bpeA	BPSL0814	-	RND family acriflavine resistance protein A precursor
814	 65.29	0	944167..947367	+	1066	53718453	bpeB	BPSL0815	-	RND family acriflavine resistance protein
815	 71.33	0	947371..948915	+	514	53718454	oprB	BPSL0816	-	outer membrane efflux protein
816	 64.80	0	949498..950943	-	481	53718455	-	BPSL0817	-	putative permease protein
817	 76.91	+1	951272..952696	+	474	53718456	-	BPSL0818	-	putative sugar kinase protein
818	 69.28	0	952965..953999	-	344	53718457	-	BPSL0819	-	AraC family transcription regulator
819	 64.86	0	954204..955310	+	368	53718458	flhA	BPSL0820	-	glutathione-dependent formaldehyde dehydrogenase
820	 69.69	0	955324..956184	+	286	53718459	fghA	BPSL0821	-	putative S-formylglutathione hydrolase
821	 71.59	0	956329..957120	-	263	53718460	-	BPSL0822	-	putative ABC transporter permease component
822	 71.02	0	957113..957985	-	290	53718461	-	BPSL0823	-	putative ABC transporter ATP-binding component
823	 69.98	0	958008..958883	-	291	53718462	-	BPSL0824	-	putative periplasmic solute-binding protein
824	 69.25	0	959141..959605	-	154	53718463	-	BPSL0825	-	FUR family transcriptional regulator
825	 69.63	0	959899..960675	+	258	53718464	-	BPSL0826	-	sorbitol dehydrogenase
826	 74.09	+1	960680..961636	+	318	53718465	scrK	BPSL0827	-	putative fructokinase
827	 73.48	+1	961624..963120	+	498	53718466	-	BPSL0828	-	putative tagatose 6-phosphate kinase protein
828	 66.97	0	963171..964499	+	442	53718467	-	BPSL0829	-	putative periplasmic ABC transporter substrate-binding component
829	 66.14	0	964607..965551	+	314	53718468	-	BPSL0830	-	putative transmembrane ABC transporter protein
830	 65.74	0	965548..966414	+	288	53718469	-	BPSL0831	-	putative ABC transporter permease protein
831	 74.25	+1	966411..967109	+	232	53718470	-	BPSL0832	-	putative haloacid dehalogenase hydrolase
832	 67.95	0	967116..968282	+	388	53718471	-	BPSL0833	-	putative sugar ABC transporter protein
833	 67.74	0	968501..969802	-	433	53718472	-	BPSL0834	-	hypothetical protein
834	 71.64	0	970247..971131	-	294	53718473	-	BPSL0835	-	LysR family transcriptional regulator
835	 74.60	+1	971269..972465	+	398	53718474	-	BPSL0836	-	peptidase
836	 76.07	+1	972462..973673	+	403	53718475	-	BPSL0837	-	putative transporter protein
837	 71.20	0	973846..974793	-	315	53718476	-	BPSL0838	-	putative transcriptional regulator
838	 74.76	+1	974880..976361	-	493	53718477	dalK	BPSL0839	-	putative carbohydrate kinase
839	 72.63	+1	976472..977914	-	480	53718478	dalD	BPSL0840	-	putative D-arabinitol 4-dehydrogenase
67.43	MEAN

4.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.