IslandPath Analysis: Burkholderia pseudomallei K96243



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.43   STD DEV: 4.78
Burkholderia pseudomallei K96243 chromosome 1, complete sequence - 1..4074542
3399 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
30	 66.01	0	30991..31752	+	253	53717669	fliP	BPSL0030	-	flagellar biosynthesis protein FliP
31	 67.77	0	31778..32050	+	90	53717670	fliQ	BPSL0031	-	flagellar biosynthesis protein FliQ
32	 67.69	0	32169..32951	+	260	53717671	fliR	BPSL0032	-	flagellar biosynthetic protein
33	 72.96	+1	33271..33699	-	142	53717672	-	BPSL0033	-	MerR family transcriptional regulator
34	 72.15	0	33781..34656	+	291	53717673	-	BPSL0034	-	hypothetical protein
35	 76.63	+1	34649..35170	+	173	53717674	-	BPSL0035	-	hypothetical protein
36	 66.77	0	35328..36341	+	337	53717675	-	BPSL0036	-	putative transport protein
37	 66.04	0	36425..37222	+	265	53717676	-	BPSL0037	-	putative ATP-binding ABC transporter protein
38	 67.37	0	37241..38098	+	285	53717677	-	BPSL0038	-	binding-protein-dependent transport systems inner membrane component
39	 71.45	0	38176..39555	+	459	53717678	-	BPSL0039	-	sensor kinase protein
40	 67.40	0	39566..40243	+	225	53717679	-	BPSL0040	-	response regulator protein
41	 65.43	0	40566..41693	+	375	53717680	-	BPSL0041	-	outer membrane porin lipoprotein precursor
42	 68.41	0	42169..44181	+	670	53717681	-	BPSL0042	-	type III restriction-modification system methylase
43	 68.12	0	44222..47251	+	1009	53717682	-	BPSL0043	-	type III restriction system endonuclease
44	 66.39	0	47789..48889	+	366	53717683	-	BPSL0044	-	putative outer membrane porin protein
45	 66.35	0	49289..50248	+	319	53717684	-	BPSL0045	-	AraC family transcription regulator
46	 71.17	0	50371..51102	-	243	53717685	-	BPSL0046	-	ABC transport system ATP-binding protein
47	 70.40	0	51475..52197	-	240	53717686	-	BPSL0047	-	ABC transport system ATP-binding protein
48	 73.43	+1	52194..53243	-	349	53717687	-	BPSL0048	-	hypothetical protein
49	 72.70	+1	53240..54118	-	292	53717688	-	BPSL0049	-	putative branched-chain amino acid transport system permease protein
50	 67.78	0	54123..55382	-	419	53717689	-	BPSL0050	-	hypothetical protein
51	 70.52	0	55599..57104	-	501	53717690	-	BPSL0051	-	putative phenylacetaldehyde dehydrogenase
52	 67.43	0	57160..57552	-	130	53717691	-	BPSL0052	-	hypothetical protein
53	 67.65	0	57563..58372	-	269	53717692	-	BPSL0053	-	hypothetical protein
54	 73.06	+1	58418..59215	-	265	53717693	-	BPSL0054	-	putative short chain dehydrogenase
55	 69.96	0	59300..60970	-	556	53717694	-	BPSL0055	-	glucose-methanol-choline (GMC) oxidoreductase family protein
56	 65.20	0	61697..62038	+	113	53717695	-	BPSL0056	-	PadR-like family transcriptional regulator
57	 70.20	0	62035..63222	+	395	53717696	-	BPSL0057	-	hypothetical protein
58	 70.21	0	63895..64881	-	328	53717697	-	BPSL0058	-	fatty acid desaturase
59	 72.04	0	64911..65747	-	278	53717698	-	BPSL0059	-	hypothetical protein
60	 73.33	+1	66187..67281	-	364	53717699	-	BPSL0060	-	AraC family transcription regulator
61	 67.19	0	67394..68530	+	378	53717700	-	BPSL0061	-	putative acyl-CoA dehydrogenase
62	 70.98	0	69196..70401	+	401	53717701	-	BPSL0062	-	acetyl-CoA acetyltransferase
63	 70.86	0	70414..72537	+	707	53717702	-	BPSL0063	-	putative fatty oxidation complex alpha subunit
64	 72.13	0	72925..74058	+	377	53717703	-	BPSL0064	-	alpha-methylacyl-CoA racemase
65	 68.25	0	74135..74701	-	188	53717704	-	BPSL0065	-	putative lipoprotein
66	 67.96	0	75037..75501	-	154	53717705	-	BPSL0066	-	hypothetical protein
67	 66.89	0	76057..76497	+	146	53717706	-	BPSL0067	-	hypothetical protein
68	 68.83	0	76484..76852	+	122	53717707	-	BPSL0068	-	putative lipoprotein
69	 74.44	+1	77520..78278	-	252	53717708	-	BPSL0069	-	putative transmembrane regulator
70	 69.19	0	78275..78790	-	171	53717709	-	BPSL0070	-	putative RNA polymerase sigma factor
71	 70.53	0	78951..80036	+	361	53717710	-	BPSL0071	-	putative catalase
72	 64.58	0	80033..80560	+	175	53717711	-	BPSL0072	-	putative type-b cytochrome
73	 64.24	0	81428..83896	-	822	53717712	gyrB	BPSL0073	-	DNA gyrase subunit B
74	 63.59	0	84085..85188	-	367	53717713	dnaN	BPSL0074	-	DNA polymerase III subunit beta
75	 65.67	0	85351..86952	-	533	53717714	dnaA	BPSL0075	-	chromosomal replication initiation protein
76	 65.93	0	87398..87532	+	44	53717715	rpmH	BPSL0075a	-	50S ribosomal protein L34
77	 68.37	0	87606..88016	+	136	53717716	rnpA	BPSL0076	-	ribonuclease P protein component
78	 64.07	0	88096..88365	+	89	53717717	-	BPSL0077	-	hypothetical protein
79	 64.16	0	88374..90050	+	558	53717718	-	BPSL0078	-	putative inner membrane protein translocase component YidC
80	 60.61	-1	90207..90668	-	153	53717719	-	BPSL0079	-	hypothetical protein
81	 69.02	0	90964..92367	+	467	53717720	trmE	BPSL0080	-	tRNA modification GTPase TrmE
82	 59.84	-1	92536..93765	+	409	53717721	intA	BPSL0081	-	putative phage integrase
83	 66.81	0	94413..97280	-	955	53717722	-	BPSL0082	-	hypothetical protein
84	 64.33	0	97405..97746	-	113	53717723	-	BPSL0083	-	hypothetical protein
85	 61.63	-1	97743..98000	-	85	53717724	-	BPSL0084	-	hypothetical protein
86	 69.49	0	97993..98169	-	58	53717725	-	BPSL0085	-	hypothetical protein
87	 67.50	0	98537..99016	-	159	53717726	-	BPSL0086	-	hypothetical protein
88	 54.98	-2	99409..99930	-	173	53717727	-	BPSL0087	-	putative DNA-binding protein
89	 61.33	-1	100338..101255	-	305	53717728	-	BPSL0088	-	hypothetical protein
90	 57.68	-2	101248..102249	-	333	53717729	-	BPSL0089	-	hypothetical protein
91	 61.61	-1	102609..103439	-	276	53717730	-	BPSL0090	-	putative transposase protein
92	 56.82	-2	103466..103729	-	87	53717731	-	BPSL0091	-	putative transposase protein
93	 58.90	-1	104028..104915	-	295	53717732	-	BPSL0092	-	putative lipoprotein
94	 65.80	0	105283..106440	+	385	53717733	-	BPSL0093	-	putative lipoprotein
95	 61.54	-1	106503..106658	+	51	53717734	-	BPSL0094	-	putative lipoprotein
96	 60.90	-1	107005..107316	+	103	53717735	-	BPSL0095	-	hypothetical protein
97	 57.04	-2	107334..107894	+	186	53717736	speG	BPSL0096	-	spermidine n(1)-acetyltransferase
98	 59.71	-1	108383..108727	+	114	53717737	-	BPSL0097	-	hypothetical protein
99	 67.57	0	108943..109497	+	184	53717738	-	BPSL0098	-	hypothetical protein
100	 67.39	0	109682..110098	-	138	53717739	-	BPSL0099	-	glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein
101	 70.05	0	110500..111594	+	364	53717740	-	BPSL0100	-	O6-methylguanine-DNA methyltransferase
102	 74.95	+1	111591..112532	+	313	53717741	-	BPSL0101	-	putative DNA-3-methyladenine glycosylase II
103	 68.10	0	112703..114304	+	533	53717742	-	BPSL0102	-	glutamate--cysteine ligase
104	 70.46	0	114323..115771	-	482	53717743	-	BPSL0103	-	RNA polymerase sigma factor
105	 69.76	0	116034..116582	-	182	53717744	-	BPSL0104	-	hypothetical protein
106	 66.67	0	116974..117090	+	38	53717745	-	BPSL0105	-	hypothetical protein
107	 66.49	0	117179..117748	-	189	53717746	-	BPSL0106	-	hypothetical protein
108	 71.52	0	117851..118819	-	322	53717747	-	BPSL0107	-	LysR family transcriptional regulator
109	 65.21	0	118962..120056	+	364	53717748	-	BPSL0108	-	putative extracellular solute-binding lipoprotein
110	 70.35	0	120085..121197	+	370	53717749	-	BPSL0109	-	histone deacetylase family protein
111	 67.58	0	121208..122083	+	291	53717750	-	BPSL0110	-	putative carbon-nitrogen hydrolase
112	 65.68	0	123313..124425	+	370	53717751	-	BPSL0111	-	portal protein
113	 62.46	-1	124499..124783	-	94	53717752	-	BPSL0112	-	hypothetical protein
114	 61.28	-1	124780..125262	-	160	53717753	-	BPSL0113	-	hypothetical protein
115	 51.74	-2	125800..126804	-	334	53717754	-	BPSL0113A	-	hypothetical protein
116	 62.47	-1	127678..128082	+	134	53717755	-	BPSL0114	-	hypothetical protein
117	 69.77	0	128120..128989	+	289	53717756	-	BPSL0115	-	patatin-like phospholipase family protein
118	 66.86	0	129110..130126	-	338	53717757	-	BPSL0116	-	D-isomer specific 2-hydroxyacid dehydrogenase
119	 67.14	0	130565..131620	+	351	53717758	-	BPSL0117	-	LysR family transcriptional regulator
120	 64.83	0	131843..134452	-	869	53717759	-	BPSL0118	-	DNA topoisomerase III
121	 65.32	0	134663..135034	-	123	53717760	-	BPSL0119	-	putative thioredoxin
122	 74.56	+1	135094..136284	-	396	53717761	-	BPSL0120	-	SMF family protein
123	 61.71	-1	136513..137016	+	167	53717762	def	BPSL0121	-	peptide deformylase
124	 72.66	+1	137048..138031	+	327	53717763	fmt	BPSL0122	-	methionyl-tRNA formyltransferase
125	 66.67	0	138152..138787	+	211	53717764	-	BPSL0123	-	putative LysE type translocator protein
126	 65.15	0	138897..139754	+	285	53717765	-	BPSL0124	-	heat shock protein HtpX
127	 72.41	+1	140228..141637	+	469	53717766	sun	BPSL0125	-	NOL1/NOP2/Sun family protein
128	 64.30	0	141634..142224	+	196	53717767	-	BPSL0126	-	hypothetical protein
129	 66.79	0	142226..144634	+	802	53717768	-	BPSL0127	-	sensor kinase protein
67.43	MEAN

4.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.