IslandPath Analysis: Burkholderia pseudomallei K96243



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.43   STD DEV: 4.78
Burkholderia pseudomallei K96243 chromosome 1, complete sequence - 1..4074542
3399 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
697	 62.11	-1	790123..790956	+	277	53718336	-	BPSL0693	-	hypothetical protein
698	 73.85	+1	791026..791526	+	166	53718337	-	BPSL0694	-	hypothetical protein
699	 69.27	0	791664..793121	-	485	53718338	rhlE1	BPSL0695	-	putative ATP-dependent RNA helicase 1
700	 66.05	0	793249..794547	-	432	53718339	-	BPSL0696	-	putative periplasmic cytochrome c containing protein
701	 70.47	0	794567..795328	-	253	53718340	-	BPSL0697	-	putative periplasmic cytochrome c protein
702	 74.97	+1	795753..796679	+	308	53718341	-	BPSL0698	-	putative transmembrane transporter protein
703	 67.19	0	797270..798418	-	382	53718342	-	BPSL0699	-	putative galactonate dehydratase protein
704	 61.78	-1	798874..799221	+	115	53718343	-	BPSL0700	-	hypothetical protein
705	 73.25	+1	799353..799808	-	151	53718344	-	BPSL0701	-	hypothetical protein
706	 70.89	0	800104..801786	+	560	53718345	-	BPSL0702	-	calcineurin-like phosphoesterase
707	 69.85	0	801764..803647	-	627	53718346	-	BPSL0703	-	putative two-component sensor histidine kinase
708	 66.74	0	803697..805016	-	439	53718347	-	BPSL0704	-	putative two-component response regulator protein
709	 70.10	0	805804..806385	+	193	53718348	-	BPSL0705	-	hypothetical protein
710	 69.24	0	806553..808304	-	583	53718349	-	BPSL0706	-	putative aerotaxis sensor receptor
711	 69.51	0	809196..810956	-	586	53718350	-	BPSL0707	-	hypothetical protein
712	 74.30	+1	811759..812583	+	274	53718351	-	BPSL0709	-	LysR family transcriptional regulator
713	 69.35	0	812633..813712	+	359	53718352	-	BPSL0710	-	tRNA 2-selenouridine synthase
714	 75.22	+1	814099..814437	-	112	53718353	-	BPSL0711	-	hypothetical protein
715	 71.98	0	814656..816029	-	457	53718354	-	BPSL0712	-	putative ATP-binding transmembrane ABC transporter
716	 71.63	0	816038..817771	-	577	53718355	-	BPSL0713	-	putative transmembrane transporter
717	 72.32	+1	819482..820171	+	229	53718356	-	BPSL0716	-	hypothetical protein
718	 71.09	0	820168..821523	+	451	53718357	-	BPSL0717	-	nicotinate phosphoribosyltransferase
719	 73.02	+1	821674..822381	+	235	53718358	-	BPSL0718	-	putative phosphoribosyl transferase protein
720	 69.78	0	822429..825545	-	1038	53718359	-	BPSL0719	-	hypothetical protein
721	 76.39	+1	826042..827481	-	479	53718360	-	BPSL0720	-	putative alcohol dehydrogenase cytochrome c subunit precursor
722	 75.04	+1	827463..828095	-	210	53718361	-	BPSL0721	-	hypothetical protein
723	 69.75	0	828092..830917	-	941	53718362	-	BPSL0722	-	putative cytochrome c oxidase subunit I
724	 74.96	+1	830934..832055	-	373	53718363	-	BPSL0723	-	putative cytochrome c oxidase polypeptide II precursor
725	 69.46	0	832108..833934	-	608	53718364	-	BPSL0724	-	pyruvate decarboxylase
726	 73.66	+1	834328..835428	+	366	53718365	-	BPSL0725	-	putative mandelate racemase
727	 75.62	+1	835438..836409	+	323	53718366	-	BPSL0726	-	hypothetical protein
728	 72.88	+1	836406..837242	+	278	53718367	-	BPSL0727	-	hypothetical protein
729	 70.67	0	837325..838923	+	532	53718368	-	BPSL0728	-	putative glucose dehydrogenase
730	 72.55	+1	838970..840907	-	645	53718369	-	BPSL0729	-	hypothetical protein
731	 73.82	+1	841615..844116	+	833	53718370	-	BPSL0730	-	peptidase
732	 66.99	0	844113..845339	+	408	53718371	-	BPSL0731	-	LysR family transcriptional regulator
733	 66.33	0	845513..847321	-	602	53718372	-	BPSL0732	-	putative two-component regulator histidine sensor kinase
734	 61.82	-1	847318..847833	-	171	53718373	-	BPSL0733	-	hypothetical protein
735	 63.66	0	847843..848805	-	320	53718374	-	BPSL0734	-	putative two-component transcriptional response regulator
736	 68.79	0	849102..849665	+	187	53718375	-	BPSL0735	-	hypothetical protein
737	 58.96	-1	851785..852705	-	306	53718376	-	BPSL0736	-	hypothetical protein
738	 62.26	-1	852864..853181	+	105	53718377	-	BPSL0737	-	hypothetical protein
739	 56.76	-2	853178..854035	+	285	53718378	-	BPSL0738	-	hypothetical protein
740	 59.05	-1	854145..854459	-	104	53718379	-	BPSL0739	-	hypothetical protein
741	 67.27	0	854492..854656	-	54	53718380	-	BPSL0740	-	hypothetical protein
742	 54.48	-2	855094..855651	-	185	53718381	-	BPSL0741	-	hypothetical protein
743	 57.77	-2	855653..856495	-	280	53718382	-	BPSL0742	-	hypothetical protein
744	 64.31	0	856592..857440	-	282	53718383	-	BPSL0743	-	hypothetical protein
745	 62.55	-1	857474..858832	-	452	53718384	-	BPSL0744	-	putative phage-related integrase
746	 60.36	-1	859567..860280	+	237	53718385	-	BPSL0745	-	hypothetical protein
747	 56.47	-2	860669..861031	+	120	53718386	-	BPSL0746	-	hypothetical protein
748	 56.28	-2	861100..862581	+	493	53718387	-	BPSL0747	-	hypothetical protein
749	 59.63	-1	862583..862909	+	108	53718388	-	BPSL0747a	-	hypothetical protein
750	 54.58	-2	863547..864605	+	352	53718389	-	BPSL0748	-	hypothetical protein
751	 57.00	-2	864580..865065	+	161	53718390	-	BPSL0749	-	hypothetical protein
752	 57.21	-2	865065..866873	+	602	53718391	-	BPSL0750	-	hypothetical protein
753	 55.69	-2	867220..868476	+	418	53718392	-	BPSL0751	-	hypothetical protein
754	 57.23	-2	868473..869510	+	345	53718393	-	BPSL0752	-	hypothetical protein
755	 52.92	-2	869736..870419	+	227	53718394	-	BPSL0753	-	hypothetical protein
756	 54.69	-2	873400..873708	-	102	53718395	-	BPSL0756	-	putative DNA-binding protein
757	 58.11	-1	874119..874562	+	147	53718396	-	BPSL0757	-	hypothetical protein
758	 55.64	-2	874574..875362	+	262	53718397	-	BPSL0758	-	putative phosphoesterase
759	 56.16	-2	875636..876130	+	164	53718398	-	BPSL0759	-	hypothetical protein
760	 51.16	-2	876189..876446	+	85	53718399	-	BPSL0760	-	hypothetical protein
761	 58.12	-1	876443..877015	+	190	53718400	-	BPSL0761	-	hypothetical protein
762	 57.12	-2	877250..877804	+	184	53718401	-	BPSL0762	-	putative RNA 2'-phosphotransferase
763	 57.24	-2	878619..881801	+	1060	53718402	-	BPSL0763	-	putative helicase SNF2 family protein
764	 55.22	-2	881805..886049	+	1414	53718403	-	BPSL0764	-	hypothetical protein
765	 58.78	-1	886079..889639	+	1186	53718404	-	BPSL0765	-	putative helicase family protein
766	 57.41	-2	889636..891471	+	611	53718405	-	BPSL0766	-	hypothetical protein
767	 56.43	-2	891474..892274	+	266	53718406	-	BPSL0767	-	putative phospholipase protein
768	 54.83	-2	892358..893590	+	410	53718407	-	BPSL0768	-	hypothetical protein
769	 56.75	-2	893583..894086	+	167	53718408	-	BPSL0769	-	hypothetical protein
770	 55.32	-2	894083..896029	+	648	53718409	-	BPSL0770	-	hypothetical protein
771	 64.56	0	896323..896559	-	78	53718410	-	BPSL0771	-	hypothetical protein
772	 64.60	0	896537..898423	-	628	53718411	-	BPSL0772	-	phage integrase family protein
773	 64.45	0	898930..900600	-	556	53718412	-	BPSL0773	-	putative transmembrane transport protein
774	 70.52	0	900811..902367	-	518	53718413	-	BPSL0774	-	two-component sensor kinase transcriptional regulatory protein
775	 70.03	0	902391..903134	-	247	53718414	-	BPSL0775	-	response regulator transcription regulatory protein
776	 64.05	0	903338..904408	+	356	53718415	recA	BPSL0776	-	recombinase A
777	 68.61	0	904774..905391	+	205	53718416	recX	BPSL0777	-	recombination regulator RecX
778	 68.30	0	905683..906294	+	203	53718417	-	BPSL0778	-	hypothetical protein
779	 63.07	0	906374..907540	+	388	53718418	sucC	BPSL0779	-	succinyl-CoA synthetase subunit beta
780	 64.51	0	907685..908566	+	293	53718419	sucD	BPSL0780	-	succinyl-CoA synthetase subunit alpha
781	 68.14	0	908618..909430	+	270	53718420	-	BPSL0781	-	hypothetical protein
782	 72.45	+1	909649..910167	+	172	53718421	-	BPSL0782	-	putative type 4 fimbrial pilin protein
783	 68.87	0	910375..912192	+	605	53718422	-	BPSL0783	-	hypothetical protein
784	 67.30	0	912788..913261	+	157	53718423	-	BPSL0784	-	hypothetical protein
785	 69.95	0	913498..913863	+	121	53718424	-	BPSL0785	-	putative lipoprotein
786	 68.48	0	914057..914551	-	164	53718425	moaC	BPSL0786	-	molybdenum cofactor biosynthesis protein C
787	 72.81	+1	914698..916422	+	574	53718426	-	BPSL0787	-	hypothetical protein
788	 73.72	+1	916748..917371	-	207	53718427	-	BPSL0788	-	hypothetical protein
789	 71.59	0	917364..918398	-	344	53718428	-	BPSL0789	-	putative hydrolase
790	 67.56	0	918418..918864	-	148	53718429	-	BPSL0790	-	hypothetical protein
791	 68.59	0	918996..920036	-	346	53718430	waaF	BPSL0791	-	putative ADP-heptose--LPS heptosyltransferase II
792	 65.15	0	920164..920361	-	65	53718431	-	BPSL0792	-	hypothetical protein
793	 65.04	0	920427..921350	-	307	53718432	ilvE	BPSL0793	-	branched-chain amino acid aminotransferase
794	 69.07	0	921572..922321	+	249	53718433	-	BPSL0794	-	AzlC family protein
795	 71.60	0	922318..922641	+	107	53718434	-	BPSL0795	-	hypothetical protein
796	 68.51	0	922908..924101	+	397	53718435	pgk	BPSL0796	-	phosphoglycerate kinase
67.43	MEAN

4.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.