IslandPath Analysis: Burkholderia pseudomallei K96243



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.43   STD DEV: 4.78
Burkholderia pseudomallei K96243 chromosome 1, complete sequence - 1..4074542
3399 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
666	 71.46	0	753301..754239	-	312	53718305	-	BPSL0662	-	hypothetical protein
667	 61.79	-1	754617..755006	+	129	53718306	gloA	BPSL0663	-	lactoylglutathione lyase
668	 68.68	0	755219..756064	-	281	53718307	-	BPSL0664	-	hypothetical protein
669	 67.44	0	756145..756924	-	259	53718308	-	BPSL0665	-	putative acyltransferase
670	 67.55	0	756967..757530	-	187	53718309	-	BPSL0666	-	D,D-heptose 1,7-bisphosphate phosphatase
671	 69.90	0	757548..759647	-	699	53718310	glyS	BPSL0667	-	glycyl-tRNA synthetase subunit beta
672	 66.07	0	759664..760671	-	335	53718311	glyQ	BPSL0668	-	glycyl-tRNA synthetase subunit alpha
673	 70.71	0	760927..762633	-	568	53718312	lnt	BPSL0669	-	apolipoprotein N-acyltransferase
674	 63.96	0	762676..763563	-	295	53718313	-	BPSL0670	-	putative cation transporter efflux protein
675	 74.09	+1	764076..764708	-	210	53718314	-	BPSL0671	-	hypothetical protein
676	 67.65	0	764729..765544	-	271	53718315	-	BPSL0672	-	putative metalloprotease
677	 69.20	0	766175..767239	-	354	53718316	-	BPSL0673	-	putative PhoH-family protein
678	 65.28	0	767263..768636	-	457	53718317	miaB	BPSL0674	-	putative tRNA thiotransferase protein MiaB
679	 69.02	0	769122..770054	-	310	53718318	-	BPSL0675	-	LysR family transcriptional regulator
680	 70.76	0	770200..771372	+	390	53718319	-	BPSL0676	-	putative transmembrane transporter protein
681	 69.96	0	771506..772174	+	222	53718320	-	BPSL0677	-	putative DNA binding protein
682	 70.26	0	772598..773320	+	240	53718321	ribB	BPSL0678	-	putative 3,4-dihydroxy-2-butanone 4-phosphate synthase
683	 68.41	0	773388..774074	-	228	53718322	-	BPSL0679	-	putative hydrolase protein
684	 68.30	0	774204..775058	-	284	53718323	-	BPSL0680	-	hypothetical protein
685	 69.93	0	775147..776373	-	408	53718324	-	BPSL0681	-	hypothetical protein
686	 64.06	0	776411..777943	-	510	53718325	-	BPSL0682	-	putative asparagine synthetase B
687	 66.96	0	777987..779342	-	451	53718326	-	BPSL0683	-	3-phosphoshikimate 1-carboxyvinyltransferase
688	 69.72	0	779381..780688	-	435	53718327	-	BPSL0684	-	putative 3-phosphoskimimate 1-carboxyvinyltransferase
689	 62.65	-1	780710..781132	-	140	53718328	-	BPSL0685	-	hypothetical protein
690	 66.95	0	782049..782765	-	238	53718329	glpF	BPSL0686	-	putative glycerol uptake facilitator protein
691	 67.33	0	782878..784380	-	500	53718330	glpK	BPSL0687	-	glycerol kinase
692	 70.25	0	784486..786018	-	510	53718331	glpD	BPSL0688	-	glycerol-3-phosphate dehydrogenase
693	 72.31	+1	786186..786557	+	123	53718332	-	BPSL0689	-	hypothetical protein
694	 60.00	-1	786624..786833	-	69	53718333	-	BPSL0690	-	hypothetical protein
695	 65.83	0	787140..787976	-	278	53718334	glpR	BPSL0691	-	DeoR family glycerol-3-phosphate regulon repressor
696	 71.15	0	788147..789820	+	557	53718335	-	BPSL0692	-	gamma-glutamyltransferase 2
697	 62.11	-1	790123..790956	+	277	53718336	-	BPSL0693	-	hypothetical protein
698	 73.85	+1	791026..791526	+	166	53718337	-	BPSL0694	-	hypothetical protein
699	 69.27	0	791664..793121	-	485	53718338	rhlE1	BPSL0695	-	putative ATP-dependent RNA helicase 1
700	 66.05	0	793249..794547	-	432	53718339	-	BPSL0696	-	putative periplasmic cytochrome c containing protein
701	 70.47	0	794567..795328	-	253	53718340	-	BPSL0697	-	putative periplasmic cytochrome c protein
702	 74.97	+1	795753..796679	+	308	53718341	-	BPSL0698	-	putative transmembrane transporter protein
703	 67.19	0	797270..798418	-	382	53718342	-	BPSL0699	-	putative galactonate dehydratase protein
704	 61.78	-1	798874..799221	+	115	53718343	-	BPSL0700	-	hypothetical protein
705	 73.25	+1	799353..799808	-	151	53718344	-	BPSL0701	-	hypothetical protein
706	 70.89	0	800104..801786	+	560	53718345	-	BPSL0702	-	calcineurin-like phosphoesterase
707	 69.85	0	801764..803647	-	627	53718346	-	BPSL0703	-	putative two-component sensor histidine kinase
708	 66.74	0	803697..805016	-	439	53718347	-	BPSL0704	-	putative two-component response regulator protein
709	 70.10	0	805804..806385	+	193	53718348	-	BPSL0705	-	hypothetical protein
710	 69.24	0	806553..808304	-	583	53718349	-	BPSL0706	-	putative aerotaxis sensor receptor
711	 69.51	0	809196..810956	-	586	53718350	-	BPSL0707	-	hypothetical protein
712	 74.30	+1	811759..812583	+	274	53718351	-	BPSL0709	-	LysR family transcriptional regulator
713	 69.35	0	812633..813712	+	359	53718352	-	BPSL0710	-	tRNA 2-selenouridine synthase
714	 75.22	+1	814099..814437	-	112	53718353	-	BPSL0711	-	hypothetical protein
715	 71.98	0	814656..816029	-	457	53718354	-	BPSL0712	-	putative ATP-binding transmembrane ABC transporter
716	 71.63	0	816038..817771	-	577	53718355	-	BPSL0713	-	putative transmembrane transporter
717	 72.32	+1	819482..820171	+	229	53718356	-	BPSL0716	-	hypothetical protein
718	 71.09	0	820168..821523	+	451	53718357	-	BPSL0717	-	nicotinate phosphoribosyltransferase
719	 73.02	+1	821674..822381	+	235	53718358	-	BPSL0718	-	putative phosphoribosyl transferase protein
720	 69.78	0	822429..825545	-	1038	53718359	-	BPSL0719	-	hypothetical protein
721	 76.39	+1	826042..827481	-	479	53718360	-	BPSL0720	-	putative alcohol dehydrogenase cytochrome c subunit precursor
722	 75.04	+1	827463..828095	-	210	53718361	-	BPSL0721	-	hypothetical protein
723	 69.75	0	828092..830917	-	941	53718362	-	BPSL0722	-	putative cytochrome c oxidase subunit I
724	 74.96	+1	830934..832055	-	373	53718363	-	BPSL0723	-	putative cytochrome c oxidase polypeptide II precursor
725	 69.46	0	832108..833934	-	608	53718364	-	BPSL0724	-	pyruvate decarboxylase
726	 73.66	+1	834328..835428	+	366	53718365	-	BPSL0725	-	putative mandelate racemase
727	 75.62	+1	835438..836409	+	323	53718366	-	BPSL0726	-	hypothetical protein
728	 72.88	+1	836406..837242	+	278	53718367	-	BPSL0727	-	hypothetical protein
729	 70.67	0	837325..838923	+	532	53718368	-	BPSL0728	-	putative glucose dehydrogenase
730	 72.55	+1	838970..840907	-	645	53718369	-	BPSL0729	-	hypothetical protein
731	 73.82	+1	841615..844116	+	833	53718370	-	BPSL0730	-	peptidase
732	 66.99	0	844113..845339	+	408	53718371	-	BPSL0731	-	LysR family transcriptional regulator
733	 66.33	0	845513..847321	-	602	53718372	-	BPSL0732	-	putative two-component regulator histidine sensor kinase
734	 61.82	-1	847318..847833	-	171	53718373	-	BPSL0733	-	hypothetical protein
735	 63.66	0	847843..848805	-	320	53718374	-	BPSL0734	-	putative two-component transcriptional response regulator
736	 68.79	0	849102..849665	+	187	53718375	-	BPSL0735	-	hypothetical protein
737	 58.96	-1	851785..852705	-	306	53718376	-	BPSL0736	-	hypothetical protein
738	 62.26	-1	852864..853181	+	105	53718377	-	BPSL0737	-	hypothetical protein
739	 56.76	-2	853178..854035	+	285	53718378	-	BPSL0738	-	hypothetical protein
740	 59.05	-1	854145..854459	-	104	53718379	-	BPSL0739	-	hypothetical protein
741	 67.27	0	854492..854656	-	54	53718380	-	BPSL0740	-	hypothetical protein
742	 54.48	-2	855094..855651	-	185	53718381	-	BPSL0741	-	hypothetical protein
743	 57.77	-2	855653..856495	-	280	53718382	-	BPSL0742	-	hypothetical protein
744	 64.31	0	856592..857440	-	282	53718383	-	BPSL0743	-	hypothetical protein
745	 62.55	-1	857474..858832	-	452	53718384	-	BPSL0744	-	putative phage-related integrase
746	 60.36	-1	859567..860280	+	237	53718385	-	BPSL0745	-	hypothetical protein
747	 56.47	-2	860669..861031	+	120	53718386	-	BPSL0746	-	hypothetical protein
748	 56.28	-2	861100..862581	+	493	53718387	-	BPSL0747	-	hypothetical protein
749	 59.63	-1	862583..862909	+	108	53718388	-	BPSL0747a	-	hypothetical protein
750	 54.58	-2	863547..864605	+	352	53718389	-	BPSL0748	-	hypothetical protein
751	 57.00	-2	864580..865065	+	161	53718390	-	BPSL0749	-	hypothetical protein
752	 57.21	-2	865065..866873	+	602	53718391	-	BPSL0750	-	hypothetical protein
753	 55.69	-2	867220..868476	+	418	53718392	-	BPSL0751	-	hypothetical protein
754	 57.23	-2	868473..869510	+	345	53718393	-	BPSL0752	-	hypothetical protein
755	 52.92	-2	869736..870419	+	227	53718394	-	BPSL0753	-	hypothetical protein
756	 54.69	-2	873400..873708	-	102	53718395	-	BPSL0756	-	putative DNA-binding protein
757	 58.11	-1	874119..874562	+	147	53718396	-	BPSL0757	-	hypothetical protein
758	 55.64	-2	874574..875362	+	262	53718397	-	BPSL0758	-	putative phosphoesterase
759	 56.16	-2	875636..876130	+	164	53718398	-	BPSL0759	-	hypothetical protein
760	 51.16	-2	876189..876446	+	85	53718399	-	BPSL0760	-	hypothetical protein
761	 58.12	-1	876443..877015	+	190	53718400	-	BPSL0761	-	hypothetical protein
762	 57.12	-2	877250..877804	+	184	53718401	-	BPSL0762	-	putative RNA 2'-phosphotransferase
763	 57.24	-2	878619..881801	+	1060	53718402	-	BPSL0763	-	putative helicase SNF2 family protein
764	 55.22	-2	881805..886049	+	1414	53718403	-	BPSL0764	-	hypothetical protein
765	 58.78	-1	886079..889639	+	1186	53718404	-	BPSL0765	-	putative helicase family protein
67.43	MEAN

4.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.