IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei K96243



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.43 STD DEV: 4.78
Burkholderia pseudomallei K96243 chromosome 1, complete sequence - 1..4074542
3399 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2795	 72.26	+1	3376582..3378600	-	672	53720434	-	BPSL2825	-	hypothetical protein
2796	 66.76	0	3378622..3379752	-	376	53720435	dnaJ	BPSL2826	-	putative DnaJ chaperone protein
2797	 64.98	0	3380019..3381971	-	650	53720436	dnaK	BPSL2827	-	molecular chaperone DnaK
2798	 68.46	0	3382564..3383121	-	185	53720437	-	BPSL2829	-	putative heat shock protein
2799	 69.36	0	3383618..3384025	-	135	53720438	hslR	BPSL2830	-	putative heat shock protein 15
2800	 69.38	0	3384031..3385134	-	367	53720439	hemH	BPSL2831	-	ferrochelatase
2801	 66.67	0	3385307..3386329	-	340	53720440	hrcA	BPSL2832	-	heat-inducible transcription repressor
2802	 67.55	0	3386463..3387365	+	300	53720441	ppnK	BPSL2833	-	inorganic polyphosphate/ATP-NAD kinase
2803	 71.58	0	3387395..3389044	+	549	53720442	-	BPSL2834	-	putative RecN DNA repair protein
2804	 72.23	+1	3389443..3392226	-	927	53720443	glnE	BPSL2835	-	putative glutamate-ammonia-ligase adenylyltransferase
2805	 72.60	+1	3392387..3396580	+	1397	53720444	-	BPSL2836	-	hypothetical protein
2806	 70.89	0	3396632..3397459	+	275	53720445	-	BPSL2837	-	putative carbon-nitrogen hydrolase protein
2807	 69.67	0	3397539..3399035	+	498	53720446	tldD	BPSL2838	-	putative DNA gyrase control protein
2808	 66.76	0	3399445..3400518	+	357	53720447	aroG	BPSL2839	-	phospho-2-dehydro-3-deoxyheptonate aldolase
2809	 67.82	0	3400797..3402005	-	402	53720448	hmpA	BPSL2840	-	flavohemoprotein
2810	 73.65	+1	3402117..3402689	-	190	53720449	-	BPSL2841	-	hypothetical protein
2811	 70.92	0	3402853..3404262	+	469	53720450	-	BPSL2842	-	putative FAD-binding oxidase
2812	 69.08	0	3404327..3405820	+	497	53720451	glcD	BPSL2843	-	putative glycolate oxidase subunit GlcD
2813	 72.64	+1	3405922..3407010	+	362	53720452	glcE	BPSL2844	-	glycolate oxidase FAD binding subunit
2814	 69.52	0	3407017..3408243	+	408	53720453	glcF	BPSL2845	-	glycolate oxidase iron-sulfur subunit
2815	 71.67	0	3408489..3409187	+	232	53720454	-	BPSL2846	-	hypothetical protein
2816	 73.06	+1	3409222..3410034	+	270	53720455	-	BPSL2847	-	pyrroline-5-carboxylate reductase
2817	 69.73	0	3410457..3411272	-	271	53720456	phnE	BPSL2848	-	putative phosphonate transport protein PhnE
2818	 65.36	0	3411269..3412264	-	331	53720457	phnD	BPSL2849	-	putative phosphonates-binding periplasmic protein precursor
2819	 71.81	0	3412347..3413318	-	323	53720458	phnC	BPSL2850	-	putative phosphonates transport ATP-binding protein PhnC
2820	 72.06	0	3413504..3414634	-	376	53720459	phnM	BPSL2851	-	putative phosphonate metabolism PhnM protein
2821	 72.81	+1	3414649..3415446	-	265	53720460	phnL	BPSL2852	-	putative phosphonates transport ATP-binding protein PhnL
2822	 68.74	0	3415455..3416225	-	256	53720461	phnK	BPSL2853	-	phosphonates transport ATP-binding protein
2823	 68.62	0	3416222..3417196	-	324	53720462	phnJ	BPSL2854	-	putative phosphonate metabolism PhnJ protein
2824	 71.44	0	3417193..3418407	-	404	53720463	phnI	BPSL2855	-	putative phosphonate metabolism PhnI protein
2825	 73.97	+1	3418407..3419036	-	209	53720464	phnH	BPSL2856	-	carbon-phosphorus lyase complex subunit
2826	 72.50	+1	3419033..3419581	-	182	53720465	phnG	BPSL2857	-	putative phosphonate metabolism PhnG protein
2827	 68.86	0	3419714..3420532	+	272	53720466	phnF	BPSL2858	-	GntR family transcriptional regulator
2828	 77.32	+2	3420522..3421319	+	265	53720467	-	BPSL2859	-	hypothetical protein
2829	 71.17	0	3421316..3421870	+	184	53720468	phnN	BPSL2860	-	putative ATP-binding protein PhnN
2830	 66.04	0	3422301..3423251	-	316	53720469	ubiA	BPSL2861	-	4-hydroxybenzoate octaprenyltransferase
2831	 72.07	0	3423627..3424163	-	178	53720470	-	BPSL2862	-	hypothetical protein
2832	 64.42	0	3424448..3424936	-	162	53720471	-	BPSL2863	-	ferritin DPS family DNA-binding protein
2833	 78.16	+2	3425136..3425309	-	57	53720472	-	BPSL2864	-	hypothetical protein
2834	 69.16	0	3425408..3427654	-	748	53720473	katG	BPSL2865	-	catalase-peroxidase protein
2835	 65.62	0	3428080..3429039	-	319	53720474	oxyR	BPSL2866	-	oxidative stress regulatory protein
2836	 73.25	+1	3429175..3431421	-	748	53720475	recG	BPSL2867	-	putative ATP-dependent DNA helicase
2837	 71.56	0	3432038..3433120	+	360	53720476	queA	BPSL2868	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
2838	 66.58	0	3433421..3434614	+	397	53720477	tgt	BPSL2869	-	queuine tRNA-ribosyltransferase
2839	 60.86	-1	3435044..3435370	+	108	53720478	yajC	BPSL2870	-	preprotein translocase subunit YajC
2840	 68.69	0	3435478..3437502	+	674	53720479	secD	BPSL2871	-	preprotein translocase subunit SecD
2841	 63.41	0	3437518..3438468	+	316	53720480	secF	BPSL2872	-	preprotein translocase subunit SecF
2842	 68.11	0	3438714..3439337	-	207	53720481	-	BPSL2873	-	hypothetical protein
2843	 64.25	0	3439438..3440016	-	192	53720482	-	BPSL2874	-	hypothetical protein
2844	 63.81	0	3440083..3440643	-	186	53720483	-	BPSL2875	-	hypothetical protein
2845	 66.49	0	3440655..3441218	-	187	53720484	-	BPSL2876	-	putative cytochrome b-561 membrane protein
2846	 67.73	0	3441483..3442139	+	218	53720485	-	BPSL2877	-	putative paraquat-inducible protein
2847	 68.33	0	3442136..3442798	+	220	53720486	-	BPSL2878	-	putative paraquat-inducible protein
2848	 67.39	0	3442785..3444446	+	553	53720487	lpw206-207	BPSL2879	-	paraquat-inducible protein
2849	 76.01	+1	3444443..3445213	+	256	53720488	-	BPSL2880	-	putative lipoprotein
2850	 70.25	0	3446148..3448265	+	705	53720489	-	BPSL2881	-	hypothetical protein
2851	 71.62	0	3448434..3449726	+	430	53720490	-	BPSL2882	-	putative RNA-methylase protein
2852	 64.23	0	3451155..3451565	+	136	53720491	-	BPSL2883	-	hypothetical protein
2853	 70.45	0	3452044..3452730	+	228	53720492	-	BPSL2884	-	hypothetical protein
2854	 65.36	0	3453240..3454694	-	484	53720493	pntB	BPSL2885	-	NAD(P) transhydrogenase subunit beta
2855	 64.85	0	3454691..3455020	-	109	53720494	pntAB	BPSL2886	-	NAD(P) transhydrogenase subunit alpha
2856	 71.23	0	3455033..3456172	-	379	53720495	pntAA	BPSL2887	-	NAD(P) transhydrogenase subunit alpha
2857	 71.37	0	3456416..3456925	+	169	53720496	-	BPSL2888	-	putative hydrolase
2858	 68.66	0	3456922..3458073	+	383	53720497	trmU	BPSL2889	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
2859	 68.80	0	3458195..3459835	+	546	53720498	-	BPSL2890	-	putative glutamate synthase
2860	 65.85	0	3460103..3460711	-	202	53720499	-	BPSL2891	-	putative glutathione S-transferase-related protein
2861	 72.48	+1	3461269..3462678	+	469	53720500	-	BPSL2892	-	aminopeptidase P
2862	 74.62	+1	3462723..3463916	+	397	53720501	-	BPSL2893	-	hypothetical protein
2863	 67.70	0	3464124..3465188	+	354	53720502	-	BPSL2894	-	putative nitrogen regulation-related protein
2864	 59.40	-1	3465185..3465418	+	77	53720503	fis	BPSL2895	-	DNA-binding protein Fis
2865	 66.73	0	3465463..3467028	+	521	53720504	purH	BPSL2896	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
2866	 70.72	0	3467395..3467937	+	180	53720505	ruvC	BPSL2897	-	Holliday junction resolvase
2867	 66.84	0	3468011..3468592	+	193	53720506	ruvA	BPSL2898	-	Holliday junction DNA helicase motor protein
2868	 69.09	0	3468774..3469844	+	356	53720507	ruvB	BPSL2899	-	Holliday junction DNA helicase B
2869	 72.20	0	3469870..3470826	+	318	53720508	-	BPSL2900	-	hypothetical protein
2870	 70.43	0	3470958..3472100	+	380	53720509	-	BPSL2901	-	putative lipoprotein
2871	 68.99	0	3472256..3472945	-	229	53720510	-	BPSL2902	-	putative phosphoglycerate mutase
2872	 72.50	+1	3472953..3473432	-	159	53720511	dtd	BPSL2903	-	D-tyrosyl-tRNA deacylase
2873	 64.81	0	3473503..3474744	-	413	53720512	tyrZ	BPSL2904	-	tyrosyl-tRNA synthetase
2874	 72.85	+1	3474875..3476086	+	403	53720513	anmK	BPSL2905	-	anhydro-N-acetylmuramic acid kinase
2875	 66.95	0	3476197..3476895	-	232	53720514	-	BPSL2906	-	putative glutathione S-transferase-like protein
2876	 68.65	0	3476900..3477604	-	234	53720515	-	BPSL2907	-	putative glutathione S-transferase like protein
2877	 70.21	0	3477697..3478599	+	300	53720516	-	BPSL2908	-	AraC family transcriptional regulator
2878	 61.25	-1	3478769..3479137	-	122	53720517	-	BPSL2909	-	iron-sulfur cluster insertion protein ErpA
2879	 63.36	0	3479344..3479736	-	130	53720518	rpsI	BPSL2910	-	30S ribosomal protein S9
2880	 59.91	-1	3479748..3480176	-	142	53720519	rplM	BPSL2911	-	50S ribosomal protein L13
2881	 63.59	0	3480846..3481268	+	140	53720520	-	BPSL2912	-	putative OsmC-like protein
2882	 72.84	+1	3481935..3482777	-	280	53720521	-	BPSL2913	-	hypothetical protein
2883	 69.78	0	3483172..3484230	-	352	53720522	pyrC	BPSL2914	-	dihydroorotase
2884	 65.79	0	3484440..3485354	+	304	53720523	-	BPSL2915	-	hypothetical protein
2885	 63.72	0	3485801..3486139	-	112	53720524	-	BPSL2916	-	hypothetical protein
2886	 69.05	0	3486496..3486915	-	139	53720525	-	BPSL2917	-	putative heat shock Hsp20-related protein
2887	 62.81	0	3486981..3487421	-	146	53720526	-	BPSL2918	-	putative heat shock Hsp20-related protein
2888	 65.41	0	3487884..3488201	+	105	53720527	groES2	BPSL2919	-	10 kDa chaperonin
2889	 61.57	-1	3488496..3488750	+	84	53720528	-	BPSL2920	-	hypothetical protein
2890	 60.61	-1	3488860..3489585	-	241	53720529	gltL	BPSL2921	-	glutamate/aspartate transport ATP-binding protein
2891	 64.31	0	3489582..3490259	-	225	53720530	gltK	BPSL2922	-	glutamate/aspartate transport system permease protein
2892	 62.89	0	3490259..3490999	-	246	53720531	gltJ	BPSL2923	-	glutamate/aspartate transport system permease protein
2893	 60.24	-1	3491082..3491984	-	300	53720532	gltI	BPSL2924	-	glutamate/aspartate periplasmic binding protein precursor
2894	 66.21	0	3492208..3493512	-	434	53720533	-	BPSL2925	-	putative glutamate dehydrogenase
67.43	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.