IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei K96243



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.43 STD DEV: 4.78
Burkholderia pseudomallei K96243 chromosome 1, complete sequence - 1..4074542
3399 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2615	 65.64	0	3168176..3168757	-	193	53720254	-	BPSL2644	-	hypothetical protein
2616	 74.36	+1	3168754..3169065	-	103	53720255	-	BPSL2645	-	hypothetical protein
2617	 67.89	0	3169253..3170647	+	464	53720256	hemN	BPSL2646	-	coproporphyrinogen III oxidase
2618	 64.71	0	3170681..3170986	+	101	53720257	-	BPSL2647	-	hypothetical protein
2619	 64.83	0	3171093..3171746	+	217	53720258	pcm	BPSL2648	-	protein-L-isoaspartate O-methyltransferase
2620	 68.52	0	3171761..3172084	+	107	53720259	-	BPSL2649	-	hypothetical protein
2621	 69.00	0	3172177..3173505	-	442	53720260	-	BPSL2650	-	beta amino acid--pyruvate transaminase
2622	 64.37	0	3173859..3175166	+	435	53720261	-	BPSL2651	-	hypothetical protein
2623	 71.10	0	3175261..3176883	+	540	53720262	-	BPSL2652	-	putative branched-chain amino acid transport system, permease component
2624	 68.16	0	3176885..3178087	+	400	53720263	-	BPSL2653	-	putative branched-chain amino acid transport system, permease component
2625	 68.17	0	3178084..3178947	+	287	53720264	-	BPSL2654	-	putative ABC transport ATP-binding subunit
2626	 68.98	0	3178952..3179644	+	230	53720265	-	BPSL2655	-	putative ABC transport ATP-binding subunit
2627	 73.07	+1	3179763..3180761	+	332	53720266	UreD	BPSL2656	-	UreD-family accessory protein
2628	 63.70	0	3180983..3181285	+	100	53720267	ureA	BPSL2657	-	urease subunit gamma
2629	 69.28	0	3181375..3181680	+	101	53720268	ureB	BPSL2658	-	urease subunit beta
2630	 68.19	0	3181745..3183451	+	568	53720269	ureC	BPSL2659	-	urease subunit alpha
2631	 70.87	0	3183469..3184086	+	205	53720270	ureE	BPSL2660	-	urease accessory protein UreE
2632	 72.25	+1	3184073..3184753	+	226	53720271	ureF	BPSL2661	-	urease accessory protein
2633	 65.75	0	3184784..3185434	+	216	53720272	ureG	BPSL2662	-	urease accessory protein
2634	 74.60	+1	3185671..3187056	-	461	53720273	waaA	BPSL2663	-	3-deoxy-D-manno-octulosonic-acid transferase
2635	 68.93	0	3187094..3187978	-	294	53720274	-	BPSL2664	-	hypothetical protein
2636	 71.69	0	3187994..3188989	-	331	53720275	waaC1	BPSL2665	-	lipopolysaccharide heptosyltransferase-1
2637	 68.32	0	3189170..3190564	-	464	53720276	pgm	BPSL2666	-	phosphoglucomutase
2638	 69.29	0	3190822..3192081	+	419	53720277	-	BPSL2667	-	putative lipopolysaccharide biosynthesis protein
2639	 69.65	0	3192078..3192914	+	278	53720278	-	BPSL2668	-	putative glycosyl transferase
2640	 69.69	0	3192943..3194100	+	385	53720279	-	BPSL2669	-	putative glycosyl transferase
2641	 68.52	0	3194115..3195137	+	340	53720280	-	BPSL2670	-	UDP-glucose 4-epimerase
2642	 65.67	0	3195165..3196271	+	368	53720281	-	BPSL2671	-	putative undecaprenyl phosphate N-acetylglucosaminyltransferase
2643	 65.10	0	3196645..3198558	-	637	53720282	wbiI	BPSL2672	-	putative epimerase/dehydratase polysaccharide-related biosynthesis protein
2644	 59.94	-1	3198565..3199575	-	336	53720283	wbiH	BPSL2673	-	putative undecaprenyl phosphate N-acetylglucosaminyltransferase
2645	 66.36	0	3199593..3200558	-	321	53720284	wbiG	BPSL2674	-	putative epimerase/dehydratase
2646	 57.88	-1	3200555..3201385	-	276	53720285	wbiF	BPSL2675	-	putative glycosyl transferase
2647	 60.64	-1	3201460..3203301	-	613	53720286	wbiE	BPSL2676	-	putative glycosyl transferase
2648	 59.19	-1	3203353..3205077	-	574	53720287	wbiD	BPSL2677	-	putative O-antigen methyl transferase
2649	 59.63	-1	3205081..3206004	-	307	53720288	wbiC	BPSL2678	-	putative glycosyl transferase
2650	 60.71	-1	3206025..3207116	-	363	53720289	wbiB	BPSL2679	-	putative epimerase/dehydratase
2651	 56.34	-2	3207116..3208354	-	412	53720290	wbiA	BPSL2680	-	putative O-antigen acetylase
2652	 59.08	-1	3208351..3209760	-	469	53720291	wzt	BPSL2681	-	ABC transporter, ATP-binding component
2653	 55.64	-2	3209750..3210583	-	277	53720292	wzm	BPSL2682	-	putative ABC transporter, membrane permease
2654	 63.10	0	3210610..3211506	-	298	53720293	rmlD	BPSL2683	-	dTDP-4-dehydrorhamnose reductase
2655	 55.80	-2	3211503..3212054	-	183	53720294	rmlC	BPSL2684	-	dTDP-6-deoxy-D-glucose-3,5 epimerase
2656	 63.42	0	3212039..3212932	-	297	53720295	rmlA	BPSL2685	-	glucose-1-phosphate thymidylyltransferase
2657	 64.97	0	3212944..3214005	-	353	53720296	rmlB	BPSL2686	-	dTDP-glucose 4,6-dehydratase
2658	 70.55	0	3214383..3215231	+	282	53720297	apaH	BPSL2687	-	diadenosine tetraphosphatase
2659	 71.15	0	3215361..3216230	-	289	53720298	plsC	BPSL2688	-	putative 1-acyl-SN-glycerol-3-phosphate acyltransferase
2660	 71.60	0	3216245..3217522	-	425	53720299	pyrX	BPSL2689	-	dihydroorotase
2661	 66.18	0	3217614..3218645	-	343	53720300	pyrB	BPSL2690	-	aspartate carbamoyltransferase catalytic subunit
2662	 73.60	+1	3218726..3219244	-	172	53720301	pyrR	BPSL2691	-	pyrimidine regulatory protein PyrR
2663	 66.44	0	3219231..3219671	-	146	53720302	-	BPSL2692	-	Holliday junction resolvase-like protein
2664	 65.28	0	3219668..3220246	-	192	53720303	-	BPSL2693	-	hypothetical protein
2665	 73.50	+1	3220452..3221783	-	443	53720304	-	BPSL2694	-	hypothetical protein
2666	 56.14	-2	3221882..3222052	-	56	53720305	rubA	BPSL2695	-	rubredoxin
2667	 69.49	0	3222272..3223120	+	282	53720306	-	BPSL2696	-	putative kinase
2668	 63.99	0	3223479..3225119	-	546	53720307	groEL	BPSL2697	-	chaperonin GroEL
2669	 60.54	-1	3225167..3225460	-	97	53720308	groES	BPSL2698	-	co-chaperonin GroES
2670	 68.10	0	3226050..3228209	-	719	53720309	-	BPSL2699	-	hypothetical protein
2671	 64.37	0	3229267..3229701	-	144	53720310	-	BPSL2700	-	hypothetical protein
2672	 68.45	0	3229950..3230957	+	335	53720311	-	BPSL2701	-	alcohol dehydrogenase
2673	 71.10	0	3230981..3231949	-	322	53720312	-	BPSL2702	-	hypothetical protein
2674	 64.34	0	3232494..3233009	-	171	53720313	-	BPSL2703	-	hypothetical protein
2675	 64.68	0	3233125..3234030	-	301	53720314	-	BPSL2704	-	OmpW family exported protein
2676	 65.95	0	3234027..3235280	-	417	53720315	-	BPSL2705	-	putative lipoprotein
2677	 66.42	0	3235340..3236938	-	532	53720316	-	BPSL2706	-	putative lipoprotein
2678	 65.32	0	3237675..3238121	-	148	53720317	-	BPSL2707	-	hypothetical protein
2679	 63.99	0	3238401..3239633	+	410	53720318	-	BPSL2708	-	putative exported metallo-beta-lactamase-family protein
2680	 69.73	0	3239812..3240399	+	195	53720319	-	BPSL2709	-	putative DNA-binding protein
2681	 71.78	0	3240396..3240923	+	175	53720320	-	BPSL2710	-	putative acetyltransferase
2682	 68.27	0	3241273..3241896	+	207	53720321	-	BPSL2711	-	amino acid transporter LysE
2683	 68.34	0	3242349..3243485	+	378	53720322	-	BPSL2712	-	putative hydrolase
2684	 71.66	0	3243615..3245057	+	480	53720323	-	BPSL2713	-	putative membrane transport protein
2685	 70.60	0	3245554..3246342	+	262	53720324	-	BPSL2714	-	hypothetical protein
2686	 65.48	0	3246675..3248522	-	615	53720325	-	BPSL2715	-	putative lipoprotein
2687	 71.33	0	3249128..3251227	-	699	53720326	-	BPSL2716	-	exported hydrolase
2688	 68.56	0	3251347..3251715	-	122	53720327	-	BPSL2717	-	putative lipoprotein
2689	 70.22	0	3252110..3253627	+	505	53720328	-	BPSL2718	-	hypothetical protein
2690	 67.92	0	3253725..3254363	+	212	53720329	-	BPSL2719	-	putative isomerase
2691	 71.20	0	3254437..3255384	+	315	53720330	-	BPSL2720	-	LysR family regulatory protein
2692	 74.66	+1	3255467..3256567	-	366	53720331	-	BPSL2721	-	FecCD-family membrane transporter protein
2693	 72.22	+1	3256564..3257607	-	347	53720332	-	BPSL2722	-	membrane transport solute-binding protein
2694	 73.31	+1	3257601..3258398	-	265	53720333	-	BPSL2723	-	putative Fe uptake system permease
2695	 72.79	+1	3258434..3260704	-	756	53720334	-	BPSL2724	-	putative TonB-dependent outer-membrane receptor protein
2696	 69.43	0	3261197..3261667	-	156	53720335	-	BPSL2725	-	hypothetical protein
2697	 71.90	0	3261786..3262568	-	260	53720336	-	BPSL2726	-	putative solute-binding periplasmic protein
2698	 70.26	0	3262952..3265315	-	787	53720337	xdhB	BPSL2727	-	putative xanthine dehydrogenase large subunit
2699	 71.81	0	3265344..3266861	-	505	53720338	xdhA	BPSL2728	-	xanthine dehydrogenase
2700	 71.98	0	3267141..3268364	+	407	53720339	-	BPSL2729	-	hypothetical protein
2701	 68.03	0	3268890..3269840	-	316	53720340	-	BPSL2730	-	hypothetical protein
2702	 71.27	0	3269871..3270869	+	332	53720341	-	BPSL2731	-	AraC family transcriptional regulator
2703	 68.31	0	3270894..3272108	-	404	53720342	-	BPSL2732	-	putative aminotransferase
2704	 67.38	0	3273006..3273986	+	326	53720343	-	BPSL2733	-	LysR family transcriptional regulator
2705	 69.05	0	3274033..3275037	+	334	53720344	ldhA	BPSL2734	-	D-lactate dehydrogenase
2706	 71.82	0	3275577..3276236	+	219	53720345	-	BPSL2735	-	putative oxidoreductase
2707	 71.20	0	3276352..3277521	+	389	53720346	-	BPSL2736	-	major facilitator transporter
2708	 71.01	0	3277789..3278985	+	398	53720347	-	BPSL2737	-	major facilitator transporter
2709	 70.34	0	3279418..3280725	-	435	53720348	-	BPSL2738	-	putative hydrolase
2710	 67.48	0	3280722..3282074	-	450	53720349	hmgA	BPSL2739	-	homogentisate 1,2-dioxygenase
2711	 71.24	0	3282075..3283430	-	451	53720350	pcaK	BPSL2740	-	4-hydroxybenzoate transporter
2712	 70.13	0	3283427..3283657	-	76	53720351	-	BPSL2741	-	hypothetical protein
2713	 71.06	0	3283700..3285361	-	553	53720352	-	BPSL2742	-	hypothetical protein
2714	 67.40	0	3285381..3286337	-	318	53720353	-	BPSL2743	-	putative oxidoreductase
67.43	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.