IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei K96243



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.43 STD DEV: 4.78
Burkholderia pseudomallei K96243 chromosome 1, complete sequence - 1..4074542
3399 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
216	 73.45	+1	221805..222158	-	117	53717855	-	BPSL0212A	-	hypothetical protein
217	 66.33	0	222402..223295	+	297	53717856	-	BPSL0213	-	hypothetical protein
218	 63.14	0	223564..223818	+	84	53717857	-	BPSL0214	-	hypothetical protein
219	 65.90	0	223950..224993	+	347	53717858	-	BPSL0215	-	aldo/keto reductase family protein
220	 68.28	0	225080..225265	-	61	53717859	-	BPSL0216	-	hypothetical protein
221	 71.41	0	225533..226396	-	287	53717860	-	BPSL0217	-	hypothetical protein
222	 71.86	0	226751..228040	-	429	53717861	-	BPSL0218	-	putative transporter protein
223	 65.26	0	228394..228606	+	70	53717862	-	BPSL0219	-	hypothetical protein
224	 69.19	0	228647..229678	+	343	53717863	-	BPSL0220	-	serine/threonine protein kinase
225	 68.43	0	230375..231793	-	472	53717864	calB	BPSL0222	-	putative coniferyl aldehyde dehydrogenase
226	 69.76	0	231828..233507	-	559	53717865	aidB	BPSL0223	-	putative acyl-CoA dehydrogenase
227	 69.04	0	233741..235384	+	547	53717866	-	BPSL0224	-	putative GMC oxidoreductase
228	 76.03	+1	235424..236833	-	469	53717867	-	BPSL0225	-	putative flagellar hook-length control protein
229	 71.96	0	236866..237318	-	150	53717868	fliJ	BPSL0226	-	flagellar fliJ protein
230	 72.58	+1	237324..238895	-	523	53717869	fliI	BPSL0227	-	flagellum-specific ATP synthase
231	 73.72	+1	238889..239569	-	226	53717870	fliH	BPSL0228	-	flagellar assembly protein H
232	 64.66	0	239562..240557	-	331	53717871	fliG	BPSL0229	-	flagellar motor switch protein G
233	 69.84	0	240547..242343	-	598	53717872	fliF	BPSL0230	-	flagellar MS-ring protein
234	 65.20	0	242591..242932	+	113	53717873	fliE	BPSL0231	-	flagellar hook-basal body complex protein
235	 66.67	0	243065..243499	+	144	53717874	fliS	BPSL0232	-	flagellar protein
236	 69.42	0	243496..243822	+	108	53717875	-	BPSL0233	-	hypothetical protein
237	 78.24	+2	243932..245443	+	503	53717876	-	BPSL0234	-	hypothetical protein
238	 72.33	+1	245440..245757	+	105	53717877	-	BPSL0235	-	putative export system protein
239	 69.88	0	245950..246696	+	248	53717878	-	BPSL0236	-	hypothetical protein
240	 71.64	0	246793..247818	-	341	53717879	-	BPSL0237	-	hypothetical protein
241	 67.74	0	248017..249420	-	467	53717880	-	BPSL0238	-	putative amino-acid transporter transmembrane protein
242	 64.99	0	249662..250318	-	218	53717881	-	BPSL0239	-	response regulator protein
243	 63.42	0	251607..252377	-	256	53717882	fpr	BPSL0241	-	ferredoxin--NADP reductase
244	 72.78	+1	252590..253243	-	217	53717883	-	BPSL0242	-	LysE type translocator
245	 72.32	+1	253309..254121	-	270	53717884	-	BPSL0243	-	endonuclease/exonuclease/phosphatase family protein
246	 71.99	0	254128..254691	-	187	53717885	-	BPSL0244	-	hypothetical protein
247	 67.46	0	255025..256032	+	335	53717886	-	BPSL0245	-	putative ATPase
248	 71.03	0	256104..257225	+	373	53717887	-	BPSL0246	-	putative FAD dependent oxidoreductase
249	 66.35	0	257360..257674	+	104	53717888	-	BPSL0247	-	putative iron-sulfur protein
250	 67.83	0	257907..259199	+	430	53717889	-	BPSL0248	-	putative transporter protein
251	 62.80	0	259630..261258	+	542	53717890	dppA	BPSL0249	-	putative periplasmic dipeptide transport protein
252	 66.86	0	261370..262380	+	336	53717891	dppB	BPSL0250	-	putative dipeptide transport system permease protein
253	 70.15	0	262479..263396	+	305	53717892	dppC	BPSL0251	-	putative dipeptide transport system permease protein
254	 67.07	0	263398..264390	+	330	53717893	dppD	BPSL0252	-	putative dipeptide transport system ATP-binding protein
255	 68.93	0	264387..265403	+	338	53717894	dppF	BPSL0253	-	dipeptide transporter ATP-binding subunit
256	 72.01	0	265516..266544	+	342	53717895	-	BPSL0254	-	hypothetical protein
257	 68.23	0	267022..267978	-	318	53717896	-	BPSL0255	-	hypothetical protein
258	 71.45	0	267975..268727	-	250	53717897	-	BPSL0256	-	hypothetical protein
259	 70.33	0	269350..270114	-	254	53717898	-	BPSL0257	-	hypothetical protein
260	 73.52	+1	270173..271252	-	359	53717899	-	BPSL0258	-	hypothetical protein
261	 72.75	+1	271249..271905	-	218	53717900	-	BPSL0259	-	hypothetical protein
262	 62.77	0	272055..272567	+	170	53717901	-	BPSL0260	-	hypothetical protein
263	 73.87	+1	272839..273435	-	198	53717902	-	BPSL0261	-	5-formyltetrahydrofolate cyclo-ligase family protein
264	 68.51	0	273457..275412	+	651	53717903	-	BPSL0262	-	putative transglycosylase
265	 73.85	+1	275534..276493	+	319	53717904	-	BPSL0263	-	hypothetical protein
266	 70.32	0	276548..277204	+	218	53717905	-	BPSL0264	-	hypothetical protein
267	 72.46	+1	277201..278442	+	413	53717906	cca	BPSL0265	-	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
268	 62.61	-1	279104..279325	-	73	53717907	-	BPSL0266	-	hypothetical protein
269	 68.93	0	279820..280260	-	146	53717908	-	BPSL0267	-	putative flagella synthesis protein
270	 71.59	0	280340..280684	-	114	53717909	-	BPSL0268	-	putative negative regulator of flagellin synthesis
271	 74.90	+1	280788..281552	-	254	161723214	flgA	BPSL0269	-	flagellar basal body P-ring biosynthesis protein FlgA
272	 68.90	0	282577..283068	+	163	53717911	flgB	BPSL0270	-	flagellar basal body rod protein FlgB
273	 64.79	0	283152..283577	+	141	53717912	flgC	BPSL0271	-	flagellar basal body rod protein FlgC
274	 66.78	0	283631..284482	+	283	161723213	flgD	BPSL0272	-	flagellar basal body rod modification protein
275	 64.65	0	284510..285751	+	413	53717914	flgE	BPSL0273	-	flagellar hook protein FlgE
276	 68.50	0	285778..286539	+	253	53717915	flgF	BPSL0274	-	flagellar basal body rod protein FlgF
277	 65.78	0	286573..287361	+	262	53717916	flgG	BPSL0275	-	flagellar basal body rod protein FlgG
278	 68.74	0	287382..288104	+	240	53717917	flgH	BPSL0276	-	flagellar basal body L-ring protein
279	 70.85	0	288110..289303	+	397	161723212	flgI	BPSL0277	-	flagellar basal body P-ring protein
280	 66.45	0	289304..290239	+	311	53717919	flgJ	BPSL0278	-	peptidoglycan hydrolase
281	 67.85	0	290455..291213	+	252	53717920	-	BPSL0279	-	hypothetical protein
282	 68.36	0	291419..293422	+	667	53717921	flgK	BPSL0280	-	flagellar hook-associated protein FlgK
283	 67.96	0	293438..294670	+	410	53717922	flgL	BPSL0281	-	flagellar hook-associated protein FlgL
284	 69.04	0	295038..296345	+	435	53717923	-	BPSL0282	-	putative permease
285	 70.52	0	296548..297429	-	293	53717924	-	BPSL0283	-	DNA-binding transcriptional activator GcvA
286	 71.83	0	297527..298126	+	199	53717925	-	BPSL0284	-	putative chromate transport protein
287	 69.87	0	298123..298653	+	176	53717926	-	BPSL0285	-	putative chromate transporter
288	 64.31	0	298984..299322	-	112	53717927	-	BPSL0286	-	hypothetical protein
289	 61.16	-1	299436..299780	+	114	53717928	-	BPSL0287	-	hypothetical protein
290	 68.83	0	299798..300538	+	246	53717929	-	BPSL0288	-	hypothetical protein
291	 64.81	0	301079..302212	+	377	53717930	-	BPSL0289	-	putative outer membrane porin protein
292	 64.87	0	302370..303203	-	277	53717931	-	BPSL0290	-	hypothetical protein
293	 69.86	0	303251..303814	-	187	53717932	-	BPSL0291	-	hypothetical protein
294	 69.56	0	304182..305252	-	356	53717933	-	BPSL0292	-	hypothetical protein
295	 72.03	0	305245..306513	-	422	53717934	-	BPSL0293	-	putative glucosyltransferase
296	 69.22	0	306895..308424	-	509	53717935	-	BPSL0294	-	hypothetical protein
297	 67.87	0	310066..311724	+	552	53717936	-	BPSL0295	-	putative natural resistance-associated macrophage protein
298	 68.00	0	312294..312518	+	74	53717937	-	BPSL0296	-	hypothetical protein
299	 69.90	0	312715..314076	+	453	53717938	gor	BPSL0297	-	glutathione reductase
300	 64.65	0	314669..316009	+	446	53717939	argG	BPSL0298	-	argininosuccinate synthase
301	 71.86	0	316171..316806	+	211	53717940	-	BPSL0299	-	hypothetical protein
302	 69.56	0	316896..317621	+	241	53717941	-	BPSL0300	-	hypothetical protein
303	 62.25	-1	317943..318191	+	82	53717942	-	BPSL0301	-	putative cheavy metal binding protein
304	 69.97	0	318749..321172	-	807	53717943	silP	BPSL0302	-	putative cation transporting P-type ATPase
305	 65.48	0	321837..322511	+	224	53717944	-	BPSL0303	-	putative lipoprotein
306	 72.08	0	322508..323356	+	282	53717945	-	BPSL0304	-	putative glycine rich membrane protein
307	 68.46	0	323353..323853	+	166	53717946	-	BPSL0305	-	hypothetical protein
308	 67.31	0	323887..324354	+	155	53717947	-	BPSL0306	-	hypothetical protein
309	 73.58	+1	324453..325754	+	433	53717948	-	BPSL0307	-	outer membrane efflux protein
310	 70.61	0	325765..327336	+	523	53717949	-	BPSL0308	-	hypothetical protein
311	 69.22	0	327333..330545	+	1070	53717950	silA	BPSL0309	-	putative cation efflux system protein
312	 68.71	0	330542..330883	+	113	53717951	-	BPSL0310	-	hypothetical protein
313	 65.55	0	331093..331539	+	148	53717952	-	BPSL0311	-	avidin family protein
314	 67.70	0	331614..333446	-	610	53717953	glmS1	BPSL0312	-	D-fructose-6-phosphate amidotransferase
315	 70.26	0	333510..334871	-	453	53717954	glmU	BPSL0313	-	bifunctional glmU protein
67.43	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.