IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei K96243



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.43 STD DEV: 4.78
Burkholderia pseudomallei K96243 chromosome 1, complete sequence - 1..4074542
3399 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2568	 68.39	0	3116156..3116968	-	270	53720207	minC	BPSL2597	-	septum formation inhibitor
2569	 68.24	0	3117122..3117694	-	190	53720208	-	BPSL2598	-	putative acetyltransferase protein
2570	 56.78	-2	3118611..3118883	+	90	53720209	-	BPSL2599	-	hypothetical protein
2571	 67.51	0	3119313..3120614	-	433	53720210	serS	BPSL2600	-	seryl-tRNA synthetase
2572	 63.78	0	3120727..3121038	+	103	53720211	-	BPSL2601	-	hypothetical protein
2573	 68.93	0	3121078..3122445	-	455	53720212	-	BPSL2602	-	recombination factor protein RarA
2574	 66.67	0	3122575..3123291	-	238	53720213	lolA	BPSL2603	-	outer-membrane lipoprotein carrier protein
2575	 67.64	0	3123349..3125817	-	822	53720214	-	BPSL2604	-	putative cell division protein
2576	 66.98	0	3125983..3126945	+	320	53720215	trxB	BPSL2605	-	thioredoxin reductase
2577	 73.98	+1	3127111..3127848	+	245	53720216	-	BPSL2606	-	hypothetical protein
2578	 68.76	0	3127874..3128494	+	206	53720217	-	BPSL2607	-	hypothetical protein
2579	 66.40	0	3128727..3129845	-	372	53720218	-	BPSL2608	-	ABC transporter, ATP-binding component
2580	 63.17	0	3129946..3130803	-	285	53720219	-	BPSL2609	-	ABC transporter, membrane permease
2581	 65.07	0	3130793..3131731	-	312	53720220	-	BPSL2610	-	ABC transporter, membrane permease
2582	 66.03	0	3131888..3133135	-	415	53720221	malE	BPSL2611	-	maltose-binding protein
2583	 68.37	0	3133594..3135063	+	489	53720222	zwf	BPSL2612	-	glucose-6-phosphate 1-dehydrogenase
2584	 72.39	+1	3135151..3135831	+	226	53720223	pgl	BPSL2613	-	6-phosphogluconolactonase
2585	 68.90	0	3135809..3137734	+	641	53720224	glk	BPSL2614	-	glucokinase
2586	 68.29	0	3138237..3139037	+	266	53720225	-	BPSL2615	-	ABC transporter, substrate binding component
2587	 68.64	0	3139123..3139782	+	219	53720226	-	BPSL2616	-	amino acid ABC transporter permease
2588	 66.67	0	3139829..3140554	+	241	53720227	-	BPSL2617	-	amino acid ABC transporter ATP-binding subunit
2589	 71.47	0	3140625..3141644	+	339	53720228	-	BPSL2618	-	D-cysteine desulfhydrase
2590	 71.58	0	3141641..3142108	+	155	53720229	-	BPSL2619	-	hypothetical protein
2591	 71.44	0	3142218..3143453	-	411	53720230	-	BPSL2620	-	major facilitator transporter
2592	 66.18	0	3143540..3144160	+	206	53720231	-	BPSL2621	-	hypothetical protein
2593	 69.06	0	3144260..3144718	+	152	53720232	-	BPSL2622	-	hypothetical protein
2594	 70.95	0	3145160..3146443	+	427	53720233	hemL	BPSL2623	-	glutamate-1-semialdehyde 2,1-aminomutase
2595	 72.12	0	3146472..3147608	+	378	53720234	ribD	BPSL2624	-	multifunctional riboflavin biosynthetic protein [deaminase, reductase
2596	 67.32	0	3147623..3148237	+	204	53720235	ribE	BPSL2625	-	riboflavin synthase subunit alpha
2597	 67.90	0	3148701..3149837	+	378	53720236	ribB	BPSL2626	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
2598	 63.98	0	3149917..3150438	+	173	53720237	ribH	BPSL2627	-	riboflavin synthase subunit beta
2599	 65.98	0	3150435..3150872	+	145	53720238	nusB	BPSL2628	-	transcription antitermination protein NusB
2600	 69.54	0	3150880..3152130	+	416	53720239	-	BPSL2629	-	aminotransferase
2601	 70.32	0	3152745..3153812	-	355	53720240	-	BPSL2630	-	putative lipoprotein
2602	 68.21	0	3154437..3155996	+	519	53720241	ubiD	BPSL2631	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
2603	 69.93	0	3156037..3156711	+	224	53720242	-	BPSL2632	-	hypothetical protein
2604	 70.73	0	3157166..3158149	-	327	53720243	-	BPSL2633	-	serine/threonine dehydratase
2605	 70.75	0	3158311..3158604	-	97	53720244	-	BPSL2634	-	hypothetical protein
2606	 73.97	+1	3159029..3160165	+	378	53720245	-	BPSL2635	-	hypothetical protein
2607	 65.78	0	3160248..3160811	+	187	53720246	-	BPSL2636	-	hypothetical protein
2608	 66.67	0	3160835..3161191	-	118	53720247	-	BPSL2637	-	hypothetical protein
2609	 66.15	0	3161215..3161601	-	128	53720248	-	BPSL2638	-	CrcB-family inner membrane protein
2610	 67.65	0	3162211..3163431	+	406	53720249	-	BPSL2639	-	hypothetical protein
2611	 69.14	0	3163699..3164427	-	242	53720250	-	BPSL2640	-	hypothetical protein
2612	 69.54	0	3164671..3165921	-	416	53720251	-	BPSL2641	-	Sir2 family protein
2613	 70.55	0	3166316..3167113	+	265	53720252	trmB	BPSL2642	-	tRNA (guanine-N(7))-methyltransferase
2614	 66.06	0	3167269..3168099	-	276	53720253	uppP	BPSL2643	-	undecaprenyl pyrophosphate phosphatase
2615	 65.64	0	3168176..3168757	-	193	53720254	-	BPSL2644	-	hypothetical protein
2616	 74.36	+1	3168754..3169065	-	103	53720255	-	BPSL2645	-	hypothetical protein
2617	 67.89	0	3169253..3170647	+	464	53720256	hemN	BPSL2646	-	coproporphyrinogen III oxidase
2618	 64.71	0	3170681..3170986	+	101	53720257	-	BPSL2647	-	hypothetical protein
2619	 64.83	0	3171093..3171746	+	217	53720258	pcm	BPSL2648	-	protein-L-isoaspartate O-methyltransferase
2620	 68.52	0	3171761..3172084	+	107	53720259	-	BPSL2649	-	hypothetical protein
2621	 69.00	0	3172177..3173505	-	442	53720260	-	BPSL2650	-	beta amino acid--pyruvate transaminase
2622	 64.37	0	3173859..3175166	+	435	53720261	-	BPSL2651	-	hypothetical protein
2623	 71.10	0	3175261..3176883	+	540	53720262	-	BPSL2652	-	putative branched-chain amino acid transport system, permease component
2624	 68.16	0	3176885..3178087	+	400	53720263	-	BPSL2653	-	putative branched-chain amino acid transport system, permease component
2625	 68.17	0	3178084..3178947	+	287	53720264	-	BPSL2654	-	putative ABC transport ATP-binding subunit
2626	 68.98	0	3178952..3179644	+	230	53720265	-	BPSL2655	-	putative ABC transport ATP-binding subunit
2627	 73.07	+1	3179763..3180761	+	332	53720266	UreD	BPSL2656	-	UreD-family accessory protein
2628	 63.70	0	3180983..3181285	+	100	53720267	ureA	BPSL2657	-	urease subunit gamma
2629	 69.28	0	3181375..3181680	+	101	53720268	ureB	BPSL2658	-	urease subunit beta
2630	 68.19	0	3181745..3183451	+	568	53720269	ureC	BPSL2659	-	urease subunit alpha
2631	 70.87	0	3183469..3184086	+	205	53720270	ureE	BPSL2660	-	urease accessory protein UreE
2632	 72.25	+1	3184073..3184753	+	226	53720271	ureF	BPSL2661	-	urease accessory protein
2633	 65.75	0	3184784..3185434	+	216	53720272	ureG	BPSL2662	-	urease accessory protein
2634	 74.60	+1	3185671..3187056	-	461	53720273	waaA	BPSL2663	-	3-deoxy-D-manno-octulosonic-acid transferase
2635	 68.93	0	3187094..3187978	-	294	53720274	-	BPSL2664	-	hypothetical protein
2636	 71.69	0	3187994..3188989	-	331	53720275	waaC1	BPSL2665	-	lipopolysaccharide heptosyltransferase-1
2637	 68.32	0	3189170..3190564	-	464	53720276	pgm	BPSL2666	-	phosphoglucomutase
2638	 69.29	0	3190822..3192081	+	419	53720277	-	BPSL2667	-	putative lipopolysaccharide biosynthesis protein
2639	 69.65	0	3192078..3192914	+	278	53720278	-	BPSL2668	-	putative glycosyl transferase
2640	 69.69	0	3192943..3194100	+	385	53720279	-	BPSL2669	-	putative glycosyl transferase
2641	 68.52	0	3194115..3195137	+	340	53720280	-	BPSL2670	-	UDP-glucose 4-epimerase
2642	 65.67	0	3195165..3196271	+	368	53720281	-	BPSL2671	-	putative undecaprenyl phosphate N-acetylglucosaminyltransferase
2643	 65.10	0	3196645..3198558	-	637	53720282	wbiI	BPSL2672	-	putative epimerase/dehydratase polysaccharide-related biosynthesis protein
2644	 59.94	-1	3198565..3199575	-	336	53720283	wbiH	BPSL2673	-	putative undecaprenyl phosphate N-acetylglucosaminyltransferase
2645	 66.36	0	3199593..3200558	-	321	53720284	wbiG	BPSL2674	-	putative epimerase/dehydratase
2646	 57.88	-1	3200555..3201385	-	276	53720285	wbiF	BPSL2675	-	putative glycosyl transferase
2647	 60.64	-1	3201460..3203301	-	613	53720286	wbiE	BPSL2676	-	putative glycosyl transferase
2648	 59.19	-1	3203353..3205077	-	574	53720287	wbiD	BPSL2677	-	putative O-antigen methyl transferase
2649	 59.63	-1	3205081..3206004	-	307	53720288	wbiC	BPSL2678	-	putative glycosyl transferase
2650	 60.71	-1	3206025..3207116	-	363	53720289	wbiB	BPSL2679	-	putative epimerase/dehydratase
2651	 56.34	-2	3207116..3208354	-	412	53720290	wbiA	BPSL2680	-	putative O-antigen acetylase
2652	 59.08	-1	3208351..3209760	-	469	53720291	wzt	BPSL2681	-	ABC transporter, ATP-binding component
2653	 55.64	-2	3209750..3210583	-	277	53720292	wzm	BPSL2682	-	putative ABC transporter, membrane permease
2654	 63.10	0	3210610..3211506	-	298	53720293	rmlD	BPSL2683	-	dTDP-4-dehydrorhamnose reductase
2655	 55.80	-2	3211503..3212054	-	183	53720294	rmlC	BPSL2684	-	dTDP-6-deoxy-D-glucose-3,5 epimerase
2656	 63.42	0	3212039..3212932	-	297	53720295	rmlA	BPSL2685	-	glucose-1-phosphate thymidylyltransferase
2657	 64.97	0	3212944..3214005	-	353	53720296	rmlB	BPSL2686	-	dTDP-glucose 4,6-dehydratase
2658	 70.55	0	3214383..3215231	+	282	53720297	apaH	BPSL2687	-	diadenosine tetraphosphatase
2659	 71.15	0	3215361..3216230	-	289	53720298	plsC	BPSL2688	-	putative 1-acyl-SN-glycerol-3-phosphate acyltransferase
2660	 71.60	0	3216245..3217522	-	425	53720299	pyrX	BPSL2689	-	dihydroorotase
2661	 66.18	0	3217614..3218645	-	343	53720300	pyrB	BPSL2690	-	aspartate carbamoyltransferase catalytic subunit
2662	 73.60	+1	3218726..3219244	-	172	53720301	pyrR	BPSL2691	-	pyrimidine regulatory protein PyrR
2663	 66.44	0	3219231..3219671	-	146	53720302	-	BPSL2692	-	Holliday junction resolvase-like protein
2664	 65.28	0	3219668..3220246	-	192	53720303	-	BPSL2693	-	hypothetical protein
2665	 73.50	+1	3220452..3221783	-	443	53720304	-	BPSL2694	-	hypothetical protein
2666	 56.14	-2	3221882..3222052	-	56	53720305	rubA	BPSL2695	-	rubredoxin
2667	 69.49	0	3222272..3223120	+	282	53720306	-	BPSL2696	-	putative kinase
67.43	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.