IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei K96243



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.43 STD DEV: 4.78
Burkholderia pseudomallei K96243 chromosome 1, complete sequence - 1..4074542
3399 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2482	 66.17	0	3024806..3026206	-	466	53720121	udg	BPSL2511	-	putative UDP-glucose dehydrogenase
2483	 65.56	0	3026327..3027496	-	389	53720122	-	BPSL2512	-	hypothetical protein
2484	 64.15	0	3027549..3028064	-	171	53720123	-	BPSL2513	-	hypothetical protein
2485	 62.35	-1	3028067..3028390	-	107	53720124	ihfB	BPSL2514	-	integration host factor subunit beta
2486	 62.00	-1	3028413..3030125	-	570	53720125	rpsA	BPSL2515	-	30S ribosomal protein S1
2487	 68.64	0	3030270..3030980	-	236	53720126	cmk	BPSL2516	-	cytidylate kinase
2488	 70.82	0	3030977..3032998	-	673	161723198	aroA/tyrA	BPSL2517	-	bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase
2489	 67.68	0	3033465..3034547	-	360	53720128	pheA	BPSL2518	-	chorismate mutase/prephenate dehydratase
2490	 64.27	0	3034582..3035664	-	360	53720129	serC	BPSL2519	-	phosphoserine aminotransferase
2491	 62.98	0	3035838..3036434	-	198	53720130	-	BPSL2520	-	hypothetical protein
2492	 65.21	0	3036533..3039133	-	866	53720131	gyrA	BPSL2521	-	DNA gyrase subunit A
2493	 62.81	0	3039644..3040318	+	224	53720132	ompA	BPSL2522	-	outer membrane protein a precursor
2494	 65.81	0	3040487..3041185	+	232	53720133	ubiG	BPSL2523	-	3-demethylubiquinone-9 3-methyltransferase
2495	 73.14	+1	3041211..3041936	+	241	53720134	-	BPSL2524	-	putative phosphatase
2496	 70.74	0	3042586..3043272	+	228	53720135	-	BPSL2525	-	hypothetical protein
2497	 65.53	0	3043453..3043716	-	87	53720136	-	BPSL2526	-	hypothetical protein
2498	 72.18	0	3043818..3044924	-	368	53720137	-	BPSL2527	-	regulatory protein
2499	 70.54	0	3045013..3045528	+	171	53720138	fdsG	BPSL2528	-	NAD-dependent formate dehydrogenase gamma subunit
2500	 71.52	0	3045525..3047090	+	521	53720139	fdsB	BPSL2529	-	NAD-dependent formate dehydrogenase beta subunit
2501	 68.97	0	3047105..3050059	+	984	53720140	fdsA	BPSL2530	-	NAD-dependent formate dehydrogenase alpha subunit
2502	 70.50	0	3050067..3050327	+	86	53720141	fdsD	BPSL2531	-	NAD-dependent formate dehydrogenase delta subunit
2503	 71.82	0	3050669..3052336	-	555	53720142	-	BPSL2532	-	putative oxygenase
2504	 72.62	+1	3053003..3054313	+	436	53720143	-	BPSL2533	-	hypothetical protein
2505	 65.90	0	3054702..3055997	-	431	53720144	citA	BPSL2534	-	citrate-proton symporter
2506	 71.36	0	3056494..3057558	-	354	53720145	-	BPSL2535	-	putative transferase
2507	 74.00	+1	3058425..3059801	+	458	53720146	-	BPSL2536	-	amidase
2508	 69.02	0	3059910..3060419	+	169	53720147	dsbB	BPSL2537	-	disulfide bond formation protein B
2509	 72.73	+1	3060961..3061983	+	340	53720148	-	BPSL2538	-	hypothetical protein
2510	 66.57	0	3062025..3063050	+	341	53720149	add	BPSL2539	-	adenosine deaminase
2511	 66.81	0	3063112..3064524	+	470	53720150	-	BPSL2540	-	hypothetical protein
2512	 70.71	0	3064550..3065860	+	436	53720151	guaD	BPSL2541	-	guanine deaminase
2513	 68.41	0	3066348..3066920	+	190	53720152	-	BPSL2542	-	hypothetical protein
2514	 67.37	0	3067254..3067967	-	237	53720153	-	BPSL2543	-	putative lipoprotein
2515	 69.15	0	3068188..3070890	+	900	53720154	-	BPSL2544	-	alanyl aminopeptidase
2516	 70.94	0	3071238..3073532	-	764	53720155	metE	BPSL2545	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
2517	 69.88	0	3073649..3074581	+	310	53720156	metR	BPSL2546	-	transcriptional activator protein
2518	 65.09	0	3074711..3075727	+	338	53720157	fbp	BPSL2547	-	fructose-1,6-bisphosphatase
2519	 68.58	0	3076324..3076584	+	86	53720158	-	BPSL2547A	-	hypothetical protein
2520	 68.13	0	3076607..3077083	+	158	53720159	-	BPSL2548	-	hypothetical protein
2521	 69.88	0	3077252..3077500	+	82	53720160	-	BPSL2549	-	hypothetical protein
2522	 64.08	0	3078156..3078503	+	115	53720161	-	BPSL2550	-	hypothetical protein
2523	 71.69	0	3078790..3079287	-	165	53720162	-	BPSL2551	-	hypothetical protein
2524	 70.91	0	3079284..3080555	-	423	53720163	-	BPSL2552	-	putative lipoprotein
2525	 68.59	0	3080543..3082879	-	778	53720164	-	BPSL2553	-	putative siderophore receptor protein
2526	 69.60	0	3083026..3083502	-	158	53720165	-	BPSL2554	-	hypothetical protein
2527	 71.55	0	3084028..3084621	+	197	53720166	-	BPSL2555	-	chorismate mutase
2528	 70.42	0	3084928..3086073	-	381	53720167	-	BPSL2556	-	DNA polymerase/helicase
2529	 50.00	-2	3086219..3086422	-	67	53720168	cspA	BPSL2557	-	cold shock-like protein
2530	 65.15	0	3086825..3087088	+	87	53720169	-	BPSL2558	-	hypothetical protein
2531	 63.51	0	3087604..3088743	+	379	53720170	-	BPSL2559	-	outer membrane porin protein
2532	 64.72	0	3088971..3089534	-	187	53720171	greB	BPSL2560	-	transcription elongation factor GreB
2533	 64.51	0	3090073..3092442	-	789	53720172	spoT	BPSL2561	-	guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
2534	 64.22	0	3092509..3092712	-	67	53720173	rpoZ	BPSL2562	-	DNA-directed RNA polymerase subunit omega
2535	 65.64	0	3092773..3093456	-	227	53720174	gmk	BPSL2563	-	guanylate kinase
2536	 69.37	0	3093463..3094386	-	307	53720175	-	BPSL2564	-	hypothetical protein
2537	 70.36	0	3094558..3095289	+	243	53720176	rph	BPSL2565	-	ribonuclease PH
2538	 71.77	0	3095292..3095918	+	208	53720177	-	BPSL2566	-	putative deoxyribonucleotide triphosphate pyrophosphatase
2539	 68.47	0	3095915..3097132	+	405	53720178	-	BPSL2567	-	coproporphyrinogen III oxidase
2540	 69.77	0	3097526..3098041	+	171	53720179	-	BPSL2568	-	hypothetical protein
2541	 66.67	0	3098038..3098463	+	141	53720180	-	BPSL2569	-	hypothetical protein
2542	 57.89	-1	3098811..3099368	-	185	53720181	-	BPSL2570	-	hypothetical protein
2543	 62.46	-1	3099365..3099673	-	102	53720182	-	BPSL2571	-	hypothetical protein
2544	 66.67	0	3099670..3099987	-	105	53720183	-	BPSL2572	-	hypothetical protein
2545	 67.75	0	3099960..3100235	-	91	53720184	-	BPSL2573	-	hypothetical protein
2546	 63.99	0	3100232..3100567	-	111	53720185	-	BPSL2574	-	hypothetical protein
2547	 64.39	0	3100568..3101269	-	233	53720186	-	BPSL2575	-	hypothetical protein
2548	 68.40	0	3101269..3101904	-	211	53720187	-	BPSL2576	-	hypothetical protein
2549	 67.00	0	3101933..3102235	-	100	53720188	-	BPSL2577	-	hypothetical protein
2550	 68.12	0	3102329..3102535	-	68	53720189	-	BPSL2578	-	hypothetical protein
2551	 62.51	-1	3102532..3103590	-	352	53720190	-	BPSL2579	-	hypothetical protein
2552	 63.04	0	3103587..3103862	-	91	53720191	-	BPSL2580	-	hypothetical protein
2553	 63.25	0	3103855..3104205	-	116	53720192	-	BPSL2581	-	hypothetical protein
2554	 63.33	0	3104211..3104420	-	69	53720193	-	BPSL2582	-	hypothetical protein
2555	 59.52	-1	3104506..3105051	-	181	53720194	-	BPSL2583	-	hypothetical protein
2556	 57.75	-2	3105139..3105351	-	70	53720195	-	BPSL2584	-	hypothetical protein
2557	 58.68	-1	3105344..3105631	-	95	53720196	-	BPSL2585	-	hypothetical protein
2558	 65.09	0	3105703..3106971	-	422	53720197	-	BPSL2586	-	putative phage integrase
2559	 68.74	0	3108136..3108714	-	192	53720198	-	BPSL2588	-	hypothetical protein
2560	 69.29	0	3108888..3109382	+	164	53720199	-	BPSL2589	-	putative lipoprotein
2561	 69.63	0	3109801..3111114	+	437	53720200	-	BPSL2590	-	membrane transporter
2562	 63.39	0	3111295..3111477	+	60	53720201	-	BPSL2591	-	hypothetical protein
2563	 70.19	0	3111512..3112534	-	340	53720202	waaC2	BPSL2592	-	lipopolysaccharide heptosyltransferase-1
2564	 70.52	0	3112696..3114357	+	553	53720203	-	BPSL2593	-	putative chloride-channel protein
2565	 70.71	0	3114474..3114893	-	139	53720204	-	BPSL2594	-	hypothetical protein
2566	 58.04	-1	3115015..3115269	-	84	53720205	minE	BPSL2595	-	cell division topological specificity factor
2567	 63.11	0	3115282..3116097	-	271	53720206	minD	BPSL2596	-	septum site-determining protein
2568	 68.39	0	3116156..3116968	-	270	53720207	minC	BPSL2597	-	septum formation inhibitor
2569	 68.24	0	3117122..3117694	-	190	53720208	-	BPSL2598	-	putative acetyltransferase protein
2570	 56.78	-2	3118611..3118883	+	90	53720209	-	BPSL2599	-	hypothetical protein
2571	 67.51	0	3119313..3120614	-	433	53720210	serS	BPSL2600	-	seryl-tRNA synthetase
2572	 63.78	0	3120727..3121038	+	103	53720211	-	BPSL2601	-	hypothetical protein
2573	 68.93	0	3121078..3122445	-	455	53720212	-	BPSL2602	-	recombination factor protein RarA
2574	 66.67	0	3122575..3123291	-	238	53720213	lolA	BPSL2603	-	outer-membrane lipoprotein carrier protein
2575	 67.64	0	3123349..3125817	-	822	53720214	-	BPSL2604	-	putative cell division protein
2576	 66.98	0	3125983..3126945	+	320	53720215	trxB	BPSL2605	-	thioredoxin reductase
2577	 73.98	+1	3127111..3127848	+	245	53720216	-	BPSL2606	-	hypothetical protein
2578	 68.76	0	3127874..3128494	+	206	53720217	-	BPSL2607	-	hypothetical protein
2579	 66.40	0	3128727..3129845	-	372	53720218	-	BPSL2608	-	ABC transporter, ATP-binding component
2580	 63.17	0	3129946..3130803	-	285	53720219	-	BPSL2609	-	ABC transporter, membrane permease
2581	 65.07	0	3130793..3131731	-	312	53720220	-	BPSL2610	-	ABC transporter, membrane permease
67.43	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.