IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei K96243



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.43 STD DEV: 4.78
Burkholderia pseudomallei K96243 chromosome 1, complete sequence - 1..4074542
3399 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2399	 72.16	0	2938862..2939116	-	84	53720038	-	BPSL2432	-	hypothetical protein
2400	 69.41	0	2939113..2940570	-	485	53720039	-	BPSL2433	-	peptidase
2401	 68.00	0	2940638..2941690	-	350	53720040	-	BPSL2434	-	putative sigma E factor regulatory protein
2402	 70.48	0	2941696..2942298	-	200	53720041	-	BPSL2435	-	putative sigma E factor negative regulatory protein
2403	 61.67	-1	2942382..2942981	-	199	53720042	rpoE	BPSL2436	-	RNA polymerase sigma factor RpoE
2404	 78.27	+2	2943087..2943560	-	157	53720043	-	BPSL2437	-	hypothetical protein
2405	 66.02	0	2943572..2944810	-	412	53720044	fabF	BPSL2438	-	3-oxoacyl-(acyl carrier protein) synthase II
2406	 57.92	-1	2944967..2945206	-	79	53720045	acpP	BPSL2439	-	acyl carrier protein
2407	 67.73	0	2945350..2946099	-	249	53720046	fabG	BPSL2440	-	3-ketoacyl-(acyl-carrier-protein) reductase
2408	 69.24	0	2946150..2947082	-	310	53720047	fabD	BPSL2441	-	acyl-carrier-protein S-malonyltransferase
2409	 66.87	0	2947153..2948142	-	329	53720048	fabH	BPSL2442	-	3-oxoacyl-(acyl carrier protein) synthase III
2410	 65.04	0	2948142..2949248	-	368	53720049	-	BPSL2443	-	putative glycerol-3-phosphate acyltransferase PlsX
2411	 57.78	-2	2949388..2949567	-	59	53720050	rpmF	BPSL2444	-	50S ribosomal protein L32
2412	 65.40	0	2949664..2950296	-	210	53720051	-	BPSL2445	-	hypothetical protein
2413	 70.83	0	2950540..2951187	+	215	53720052	maf	BPSL2446	-	Maf-like protein
2414	 70.26	0	2951184..2951906	+	240	53720053	-	BPSL2447	-	hypothetical protein
2415	 68.16	0	2951945..2952946	-	333	53720054	-	BPSL2448	-	peptidase
2416	 71.72	0	2952956..2953351	-	131	53720055	-	BPSL2449	-	Rieske iron-sulphur protein
2417	 70.30	0	2953348..2954007	-	219	53720056	-	BPSL2450	-	haloacid dehalogenase-like hydrolase
2418	 67.86	0	2954013..2955020	-	335	53720057	rluC	BPSL2451	-	ribosomal large subunit pseudouridine synthase C
2419	 71.56	0	2955743..2959009	+	1088	53720058	-	BPSL2452	-	putative ribonuclease E
2420	 67.77	0	2959179..2960261	+	360	53720059	moaA	BPSL2453	-	molybdenum cofactor biosynthesis protein A
2421	 73.36	+1	2960277..2960918	+	213	53720060	mobA	BPSL2454	-	molybdopterin-guanine dinucleotide biosynthesis protein A
2422	 74.52	+1	2961030..2962328	+	432	53720061	-	BPSL2455	-	putative molybdopterin biosynthesis protein
2423	 61.11	-1	2962365..2962652	+	95	53720062	-	BPSL2456	-	hypothetical protein
2424	 71.63	0	2962649..2963152	+	167	53720063	-	BPSL2457	-	putative acetyltransferase
2425	 69.58	0	2963387..2964862	-	491	53720064	-	BPSL2458	-	hypothetical protein
2426	 70.71	0	2964859..2965848	-	329	53720065	-	BPSL2459	-	2-hydroxyacid dehydrogenase
2427	 66.60	0	2965914..2967356	-	480	53720066	-	BPSL2460	-	hypothetical protein
2428	 71.78	0	2967412..2968134	-	240	53720067	-	BPSL2461	-	hypothetical protein
2429	 62.83	0	2968219..2969418	-	399	53720068	-	BPSL2462	-	nicotinate phosphoribosyltransferase
2430	 62.65	0	2969687..2970010	+	107	53720069	-	BPSL2463	-	ferredoxin
2431	 66.67	0	2970498..2970977	+	159	53720070	-	BPSL2464	-	hypothetical protein
2432	 67.11	0	2971428..2972330	+	300	53720071	-	BPSL2465	-	hypothetical protein
2433	 71.81	0	2972515..2973039	-	174	53720072	-	BPSL2466	-	hypothetical protein
2434	 67.12	0	2973359..2973580	+	73	53720073	-	BPSL2467	-	hypothetical protein
2435	 71.43	0	2973705..2975111	+	468	53720074	norM	BPSL2468	-	putative multidrug resistance protein
2436	 67.31	0	2975700..2977094	+	464	53720075	fumC	BPSL2469	-	fumarate hydratase
2437	 66.67	0	2977573..2978079	-	168	53720076	-	BPSL2470	-	long-chain acyl-CoA thioester hydrolase
2438	 63.59	0	2978301..2978495	-	64	53720077	-	BPSL2470A	-	hypothetical protein
2439	 73.28	+1	2979129..2979839	+	236	53720078	-	BPSL2471	-	transcription regulator ArsR
2440	 74.63	+1	2979995..2982568	+	857	53720079	-	BPSL2472	-	putative prolin-rich exported protein
2441	 65.43	0	2982658..2983629	-	323	53720080	-	BPSL2473	-	putative thymidylate synthase
2442	 67.97	0	2983686..2985071	-	461	53720081	-	BPSL2474	-	sigma-54 interacting regulatory protein
2443	 70.46	0	2985594..2985962	+	122	53720082	-	BPSL2474A	-	hypothetical protein
2444	 71.05	0	2985959..2987236	+	425	53720083	-	BPSL2474B	-	hypothetical protein
2445	 69.54	0	2987882..2989342	+	486	53720084	-	BPSL2475	-	sigma-54 dependant regulatory protein
2446	 69.84	0	2989550..2990053	+	167	53720085	-	BPSL2476	-	dihydrofolate reductase
2447	 64.07	0	2990180..2991643	+	487	53720086	-	BPSL2477	-	putative transposase
2448	 69.15	0	2991780..2993150	-	456	53720087	-	BPSL2478	-	microcin-processing peptidase
2449	 69.46	0	2993296..2993904	+	202	53720088	-	BPSL2479	-	hypothetical protein
2450	 68.76	0	2993885..2994505	+	206	53720089	mogA	BPSL2480	-	molybdenum cofactor biosynthesis protein
2451	 65.02	0	2994786..2995391	-	201	53720090	orn	BPSL2481	-	oligoribonuclease
2452	 67.46	0	2995510..2996769	+	419	53720091	-	BPSL2482	-	peptidase
2453	 68.89	0	2996766..2997710	+	314	53720092	-	BPSL2483	-	ribosome-associated GTPase
2454	 75.47	+1	2997779..2998096	+	105	53720093	-	BPSL2484	-	hypothetical protein
2455	 65.45	0	2998263..2999252	-	329	53720094	-	BPSL2485	-	adenosylcobinamide-phosphate synthase
2456	 69.44	0	2999302..2999985	-	227	53720095	-	BPSL2486	-	hypothetical protein
2457	 69.54	0	3000900..3001490	+	196	53720096	-	BPSL2487	-	hypothetical protein
2458	 62.33	-1	3001719..3002939	-	406	53720097	tnpA	BPSL2488	-	transposase
2459	 62.05	-1	3003117..3003506	-	129	53720098	rplS	BPSL2489	-	50S ribosomal protein L19
2460	 67.55	0	3003644..3004438	-	264	53720099	trmD	BPSL2490	-	tRNA (guanine-N(1)-)-methyltransferase
2461	 68.40	0	3004440..3005075	-	211	53720100	rimM	BPSL2491	-	16S rRNA-processing protein
2462	 63.92	0	3005174..3005428	-	84	53720101	rpsP	BPSL2492	-	30S ribosomal protein S16
2463	 70.42	0	3005644..3006762	+	372	53720102	-	BPSL2493	-	hypothetical protein
2464	 66.88	0	3006869..3007336	+	155	53720103	-	BPSL2494	-	hypothetical protein
2465	 68.65	0	3007371..3008528	-	385	53720104	-	BPSL2495	-	hypothetical protein
2466	 61.35	-1	3008637..3009125	-	162	53720105	lrp	BPSL2496	-	leucine-responsive regulatory protein
2467	 68.14	0	3009273..3010559	+	428	53720106	dadA	BPSL2497	-	D-amino acid dehydrogenase small subunit
2468	 67.62	0	3010673..3012463	-	596	53720107	-	BPSL2498	-	putative acyl-CoA dehydrogenase
2469	 67.52	0	3012577..3013512	-	311	53720108	etfA	BPSL2499	-	electron transfer flavoprotein alpha-subunit
2470	 64.93	0	3013528..3014277	-	249	53720109	etfB	BPSL2500	-	electron transfer flavoprotein beta-subunit
2471	 67.17	0	3014504..3015298	-	264	53720110	-	BPSL2501	-	hypothetical protein
2472	 66.67	0	3015372..3016025	-	217	53720111	-	BPSL2502	-	ABC transporter, membrane permease
2473	 67.05	0	3016015..3017049	-	344	53720112	-	BPSL2503	-	ABC transporter, ATP-binding component
2474	 72.60	+1	3017358..3018200	+	280	53720113	-	BPSL2504	-	putative hydrolase
2475	 67.97	0	3018543..3019466	-	307	53720114	-	BPSL2505	-	putative histone deacetylase-family protein
2476	 66.74	0	3019594..3020946	+	450	53720115	-	BPSL2506	-	putative exported transglycosylase
2477	 64.89	0	3021173..3022075	-	300	53720116	cysM	BPSL2507	-	cysteine synthase B
2478	 72.76	+1	3022087..3022398	-	103	53720117	-	BPSL2507A	-	hypothetical protein
2479	 71.70	0	3022411..3022728	-	105	53720118	-	BPSL2508	-	hypothetical protein
2480	 64.35	0	3022800..3023792	-	330	53720119	gmhD	BPSL2509	-	putative ADP-glycero-mannoheptose epimerase
2481	 70.35	0	3023851..3024774	-	307	53720120	waaE	BPSL2510	-	putative ADP-heptose synthase
2482	 66.17	0	3024806..3026206	-	466	53720121	udg	BPSL2511	-	putative UDP-glucose dehydrogenase
2483	 65.56	0	3026327..3027496	-	389	53720122	-	BPSL2512	-	hypothetical protein
2484	 64.15	0	3027549..3028064	-	171	53720123	-	BPSL2513	-	hypothetical protein
2485	 62.35	-1	3028067..3028390	-	107	53720124	ihfB	BPSL2514	-	integration host factor subunit beta
2486	 62.00	-1	3028413..3030125	-	570	53720125	rpsA	BPSL2515	-	30S ribosomal protein S1
2487	 68.64	0	3030270..3030980	-	236	53720126	cmk	BPSL2516	-	cytidylate kinase
2488	 70.82	0	3030977..3032998	-	673	161723198	aroA/tyrA	BPSL2517	-	bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase
2489	 67.68	0	3033465..3034547	-	360	53720128	pheA	BPSL2518	-	chorismate mutase/prephenate dehydratase
2490	 64.27	0	3034582..3035664	-	360	53720129	serC	BPSL2519	-	phosphoserine aminotransferase
2491	 62.98	0	3035838..3036434	-	198	53720130	-	BPSL2520	-	hypothetical protein
2492	 65.21	0	3036533..3039133	-	866	53720131	gyrA	BPSL2521	-	DNA gyrase subunit A
2493	 62.81	0	3039644..3040318	+	224	53720132	ompA	BPSL2522	-	outer membrane protein a precursor
2494	 65.81	0	3040487..3041185	+	232	53720133	ubiG	BPSL2523	-	3-demethylubiquinone-9 3-methyltransferase
2495	 73.14	+1	3041211..3041936	+	241	53720134	-	BPSL2524	-	putative phosphatase
2496	 70.74	0	3042586..3043272	+	228	53720135	-	BPSL2525	-	hypothetical protein
2497	 65.53	0	3043453..3043716	-	87	53720136	-	BPSL2526	-	hypothetical protein
2498	 72.18	0	3043818..3044924	-	368	53720137	-	BPSL2527	-	regulatory protein
67.43	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.