IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei K96243



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.43 STD DEV: 4.78
Burkholderia pseudomallei K96243 chromosome 1, complete sequence - 1..4074542
3399 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2326	 71.25	0	2851767..2852486	+	239	53719965	-	BPSL2358	-	putative pyruvate radical-activating enzyme
2327	 68.46	0	2852734..2853180	-	148	53719966	-	BPSL2359	-	hypothetical protein
2328	 64.58	0	2853220..2853699	-	159	53719967	-	BPSL2360	-	hypothetical protein
2329	 66.89	0	2853755..2854642	-	295	53719968	-	BPSL2361	-	hypothetical protein
2330	 68.89	0	2854683..2855717	-	344	53719969	-	BPSL2362	-	hypothetical protein
2331	 68.88	0	2855806..2857023	-	405	53719970	-	BPSL2363	-	putative 2-nitropropane dioxygenase
2332	 72.74	+1	2857243..2858559	+	438	53719971	-	BPSL2364	-	hypothetical protein
2333	 64.79	0	2858536..2859228	-	230	53719972	-	BPSL2365	-	putative regulatory protein
2334	 65.98	0	2859237..2860682	-	481	53719973	-	BPSL2366	-	coproporphyrinogen III oxidase
2335	 69.06	0	2860837..2862759	-	640	53719974	-	BPSL2367	-	putative methyl-accepting chemotaxis protein
2336	 70.76	0	2863293..2864489	+	398	53719975	-	BPSL2368	-	hypothetical protein
2337	 66.39	0	2864978..2866432	+	484	53719976	-	BPSL2369	-	cysteine desulfurase activator complex subunit SufB
2338	 68.94	0	2866441..2867232	+	263	53719977	-	BPSL2370	-	ATP-dependent transporter protein
2339	 73.14	+1	2867237..2868472	+	411	53719978	-	BPSL2371	-	hypothetical protein
2340	 72.18	0	2868474..2869706	+	410	53719979	-	BPSL2372	-	putative selenocysteine lyase
2341	 68.50	0	2869703..2870194	+	163	53719980	-	BPSL2373	-	hypothetical protein
2342	 70.13	0	2870191..2870739	+	182	53719981	-	BPSL2374	-	hypothetical protein
2343	 63.33	0	2871037..2871336	-	99	53719982	-	BPSL2375	-	hypothetical protein
2344	 65.64	0	2871527..2872015	+	162	53719983	-	BPSL2376	-	putative DNA-binding protein
2345	 63.38	0	2872233..2872658	-	141	53719984	-	BPSL2377	-	hypothetical protein
2346	 64.20	0	2873037..2873927	+	296	53719985	cyoA	BPSL2378	-	ubiquinol oxidase polypeptide II precursor
2347	 64.13	0	2873931..2875937	+	668	53719986	cyoB	BPSL2379	-	ubiquinol oxidase polypeptide I
2348	 67.33	0	2875937..2876542	+	201	53719987	cyoC	BPSL2380	-	cytochrome o ubiquinol oxidase subunit III
2349	 65.17	0	2876543..2876875	+	110	53719988	cyoD	BPSL2381	-	putative cytochrome o ubiquinol oxidase protein
2350	 68.45	0	2877018..2878250	+	410	53719989	-	BPSL2382	-	putative fatty acid desaturase
2351	 65.28	0	2878543..2879337	-	264	53719990	-	BPSL2383	-	putative histidine-binding periplasmic protein precursor
2352	 72.95	+1	2880134..2881183	-	349	53719991	astE	BPSL2385	-	succinylglutamate desuccinylase
2353	 69.57	0	2881167..2882507	-	446	53719992	astB	BPSL2386	-	succinylarginine dihydrolase
2354	 71.58	0	2882521..2883984	-	487	53719993	astD	BPSL2387	-	succinylglutamic semialdehyde dehydrogenase
2355	 68.22	0	2883989..2885020	-	343	53719994	-	BPSL2388	-	putative arginine N-succinyltransferase, beta chain
2356	 70.35	0	2885017..2886075	-	352	53719995	-	BPSL2389	-	putative arginine N-succinyltransferase, alpha chain
2357	 68.13	0	2886121..2887353	-	410	53719996	argD	BPSL2390	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
2358	 68.29	0	2888093..2889139	-	348	53719997	-	BPSL2391	-	AraC family transcription regulator
2359	 65.66	0	2889158..2889952	-	264	53719998	hisP	BPSL2392	-	histidine transport ATP-binding protein
2360	 66.53	0	2889974..2890687	-	237	53719999	hisM	BPSL2393	-	histidine transport system permease protein
2361	 62.90	0	2890684..2891373	-	229	53720000	hisQ	BPSL2394	-	histidine transport system permease protein
2362	 66.67	0	2891689..2892249	-	186	53720001	-	BPSL2395	-	putative lipoprotein
2363	 71.63	0	2892943..2893989	-	348	53720002	-	BPSL2396	-	hypothetical protein
2364	 73.42	+1	2893986..2894873	-	295	53720003	-	BPSL2397	-	hypothetical protein
2365	 62.45	-1	2894877..2896298	-	473	53720004	-	BPSL2398	-	hypothetical protein
2366	 72.00	0	2896410..2897591	-	393	53720005	-	BPSL2399	-	putative glycosyltransferase
2367	 72.33	+1	2898218..2899276	+	352	53720006	-	BPSL2400	-	luciferase-like monooxygenase
2368	 68.90	0	2899747..2900775	-	342	53720007	-	BPSL2401	-	putative hydrolase
2369	 69.21	0	2901316..2902179	+	287	53720008	pdxY	BPSL2402	-	pyridoxamine kinase
2370	 68.33	0	2902870..2904972	+	700	53720009	plcN	BPSL2403	-	non-hemolytic phospholipase C precursor
2371	 67.45	0	2905792..2906940	+	382	53720010	-	BPSL2404	-	periplasmic ligand binding lipoprotein
2372	 71.27	0	2907039..2908211	+	390	53720011	-	BPSL2405	-	putative FAD dependent oxidoreductase
2373	 69.48	0	2908367..2908828	-	153	53720012	-	BPSL2406	-	hypothetical protein
2374	 75.00	+1	2908884..2909855	-	323	53720013	-	BPSL2407	-	hypothetical protein
2375	 66.20	0	2910122..2911186	-	354	53720014	-	BPSL2408	-	glycosyl transferase group 1 protein
2376	 69.40	0	2911753..2913618	+	621	53720015	-	BPSL2409	-	ABC transporter ATP binding protein
2377	 68.51	0	2913647..2915056	-	469	53720016	otsA	BPSL2410	-	alpha,alpha-trehalose-phosphate synthase
2378	 71.85	0	2915053..2915862	-	269	53720017	otsB	BPSL2411	-	putative trehalose-phosphatase
2379	 71.52	0	2916222..2916881	+	219	53720018	-	BPSL2412	-	SCO1/SenC family protein
2380	 66.67	0	2916908..2917354	+	148	53720019	-	BPSL2413	-	hypothetical protein
2381	 69.42	0	2917365..2918237	+	290	53720020	-	BPSL2414	-	hypothetical protein
2382	 67.26	0	2918372..2918875	-	167	53720021	-	BPSL2415	-	hypothetical protein
2383	 69.09	0	2919089..2919955	-	288	53720022	-	BPSL2416	-	hypothetical protein
2384	 71.95	0	2920082..2920990	+	302	53720023	-	BPSL2417	-	LysR family regulatory protein
2385	 66.67	0	2921155..2921667	+	170	53720024	-	BPSL2418	-	hypothetical protein
2386	 63.80	0	2923370..2923963	-	197	53720025	-	BPSL2419	-	putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
2387	 69.79	0	2924091..2926328	-	745	53720026	-	BPSL2420	-	putative excinuclease ABC subunit C
2388	 72.32	+1	2926537..2927757	+	406	53720027	-	BPSL2421	-	hypothetical protein
2389	 59.32	-1	2927947..2928504	+	185	53720028	-	BPSL2422	-	elongation factor P
2390	 69.96	0	2928775..2930172	+	465	53720029	-	BPSL2423	-	sigma-54 interacting response regulator protein
2391	 70.26	0	2930286..2931314	-	342	53720030	-	BPSL2424	-	beta-hexosaminidase
2392	 71.30	0	2931342..2931773	-	143	53720031	acpS	BPSL2425	-	4'-phosphopantetheinyl transferase
2393	 71.32	0	2931779..2932552	-	257	53720032	pdxJ	BPSL2426	-	pyridoxal phosphate biosynthetic protein PdxJ
2394	 69.34	0	2932549..2933409	-	286	161723199	recO	BPSL2427	-	DNA repair protein RecO
2395	 64.33	0	2933396..2934295	-	299	53720034	era	BPSL2428	-	GTP-binding protein Era
2396	 67.45	0	2934365..2935768	-	467	53720035	rnc	BPSL2429	-	ribonuclease III
2397	 61.97	-1	2935919..2936812	-	297	53720036	lepB	BPSL2430	-	signal peptidase I
2398	 63.10	0	2936828..2938621	-	597	53720037	lepA	BPSL2431	-	GTP-binding protein LepA
2399	 72.16	0	2938862..2939116	-	84	53720038	-	BPSL2432	-	hypothetical protein
2400	 69.41	0	2939113..2940570	-	485	53720039	-	BPSL2433	-	peptidase
2401	 68.00	0	2940638..2941690	-	350	53720040	-	BPSL2434	-	putative sigma E factor regulatory protein
2402	 70.48	0	2941696..2942298	-	200	53720041	-	BPSL2435	-	putative sigma E factor negative regulatory protein
2403	 61.67	-1	2942382..2942981	-	199	53720042	rpoE	BPSL2436	-	RNA polymerase sigma factor RpoE
2404	 78.27	+2	2943087..2943560	-	157	53720043	-	BPSL2437	-	hypothetical protein
2405	 66.02	0	2943572..2944810	-	412	53720044	fabF	BPSL2438	-	3-oxoacyl-(acyl carrier protein) synthase II
2406	 57.92	-1	2944967..2945206	-	79	53720045	acpP	BPSL2439	-	acyl carrier protein
2407	 67.73	0	2945350..2946099	-	249	53720046	fabG	BPSL2440	-	3-ketoacyl-(acyl-carrier-protein) reductase
2408	 69.24	0	2946150..2947082	-	310	53720047	fabD	BPSL2441	-	acyl-carrier-protein S-malonyltransferase
2409	 66.87	0	2947153..2948142	-	329	53720048	fabH	BPSL2442	-	3-oxoacyl-(acyl carrier protein) synthase III
2410	 65.04	0	2948142..2949248	-	368	53720049	-	BPSL2443	-	putative glycerol-3-phosphate acyltransferase PlsX
2411	 57.78	-2	2949388..2949567	-	59	53720050	rpmF	BPSL2444	-	50S ribosomal protein L32
2412	 65.40	0	2949664..2950296	-	210	53720051	-	BPSL2445	-	hypothetical protein
2413	 70.83	0	2950540..2951187	+	215	53720052	maf	BPSL2446	-	Maf-like protein
2414	 70.26	0	2951184..2951906	+	240	53720053	-	BPSL2447	-	hypothetical protein
2415	 68.16	0	2951945..2952946	-	333	53720054	-	BPSL2448	-	peptidase
2416	 71.72	0	2952956..2953351	-	131	53720055	-	BPSL2449	-	Rieske iron-sulphur protein
2417	 70.30	0	2953348..2954007	-	219	53720056	-	BPSL2450	-	haloacid dehalogenase-like hydrolase
2418	 67.86	0	2954013..2955020	-	335	53720057	rluC	BPSL2451	-	ribosomal large subunit pseudouridine synthase C
2419	 71.56	0	2955743..2959009	+	1088	53720058	-	BPSL2452	-	putative ribonuclease E
2420	 67.77	0	2959179..2960261	+	360	53720059	moaA	BPSL2453	-	molybdenum cofactor biosynthesis protein A
2421	 73.36	+1	2960277..2960918	+	213	53720060	mobA	BPSL2454	-	molybdopterin-guanine dinucleotide biosynthesis protein A
2422	 74.52	+1	2961030..2962328	+	432	53720061	-	BPSL2455	-	putative molybdopterin biosynthesis protein
2423	 61.11	-1	2962365..2962652	+	95	53720062	-	BPSL2456	-	hypothetical protein
2424	 71.63	0	2962649..2963152	+	167	53720063	-	BPSL2457	-	putative acetyltransferase
2425	 69.58	0	2963387..2964862	-	491	53720064	-	BPSL2458	-	hypothetical protein
67.43	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.